Abstract Recent advancements in the automatic re-identification of animal individuals from images have opened up new possibilities for studying wildlife through camera traps and citizen science projects. Existing methods leverage distinct and permanent visual body markings, such as fur patterns or scars, and typically employ one of two approaches: local features or end-to-end learning. The end-to-end learning-based methods outperform local feature-based methods given a sufficient amount of good-quality training data, but the challenge of gathering such datasets for wildlife animals means that local feature-based methods remain a more practical approach for many species. In this study, we aim to achieve two goals: (1) to obtain a better understanding of the impact of training-set size on animal re-identification, and (2) to explore ways to combine various methods to leverage the advantages of their approaches for re-identification. In the work, we conduct comprehensive experiments across six different methods and six animal species with various training set sizes. Furthermore, we propose a simple yet effective combination strategy and show that a properly selected method combinations outperform the individual methods with both small and large training sets up to 30%. Additionally, the proposed combination strategy offers a generalizable framework to improve accuracy across species and address the challenges posed by small datasets, which are common in ecological research. This work lays the foundation for more robust and accessible tools to support wildlife conservation, population monitoring, and behavioral studies.

Abstract Image‐based re‐identification of animal individuals allows gathering of information such as population size and migration patterns of the animals over time. This, together with large image volumes collected using camera traps and crowdsourcing, opens novel possibilities to study animal populations. For many species, the re‐identification can be done by analysing the permanent fur, feather, or skin patterns that are unique to each individual. In this paper, the authors study pattern feature aggregation based re‐identification and consider two ways of improving accuracy: (1) aggregating pattern image features over multiple images and (2) combining the pattern appearance similarity obtained by feature aggregation and geometric pattern similarity. Aggregation over multiple database images of the same individual allows to obtain more comprehensive and robust descriptors while reducing the computation time. On the other hand, combining the two similarity measures allows to efficiently utilise both the local and global pattern features, providing a general re‐identification approach that can be applied to a wide variety of different pattern types. In the experimental part of the work, the authors demonstrate that the proposed method achieves promising re‐identification accuracies for Saimaa ringed seals and whale sharks without species‐specific training or fine‐tuning.

Abstract Access to large image volumes through camera traps and crowdsourcing provides novel possibilities for animal monitoring and conservation. It calls for automatic methods for analysis, in particular, when re-identifying individual animals from the images. Most existing re-identification methods rely on either hand-crafted local features or end-to-end learning of fur pattern similarity. The former does not need labeled training data, while the latter, although very data-hungry typically outperforms the former when enough training data is available. We propose a novel re-identification pipeline that combines the strengths of both approaches by utilizing modern learnable local features and feature aggregation. This creates representative pattern feature embeddings that provide high re-identification accuracy while allowing us to apply the method to small datasets by using pre-trained feature descriptors. We report a comprehensive comparison of different modern local features and demonstrate the advantages of the proposed pipeline on two very different species.