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Deborah I. Ritter

dblp:19/2502 · DBLP profile ↗
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2ranked-venue papers
1as first author
1since 2021 · last 2024
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2 · 1 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › comparative genomics
conserved non-coding element
0.112008
cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation · Bioinform. 2008
Bioinformatics and computational biology
genomics
0.112008
cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation · Bioinform. 2008
Bioinformatics and computational biology › genomics › genomic data management
genome database
0.012008
cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation · Bioinform. 2008

Methods — techniques the papers use, named apart from their topics

web tool · 0.1database construction · 0.1
YearPublicationVenuePosition
2024 Experiences in providing a community educational resource for the All of Us Researcher Workbench
abstract
OBJECTIVE: Educational offerings to fill the bioinformatics knowledge gap are a key component to enhancing access and use of health data from the All of Us Research Program. We developed a Train the Trainer-based, innovative training series including project-based learning, modular on-demand demonstrations, and unstructured tutorial time as a model for educational engagement in the All of Us community. MATERIALS AND METHODS: We highlight our training modules and content, with training survey data informing cycles of development in the creation of a 6-module training series with modular demonstrations. RESULTS: We have conducted 2 public iterations of the Train the Trainer (Tx3) Series based on survey feedback while training over 300 registered researchers to access and analyze data on the All of Us Researcher Workbench. DISCUSSION AND CONCLUSION: Future directions of the Tx3 Series include enhanced focus on project-based learning and learner requests for modularity and asynchronous materials access.
Deborah I. Ritter, Jinyoung Byun, Stephen Richards, Pamela N. Luna, Laterrica Williams, Julie R. Coleman, Jasmine N. Baker, Shamika Ketkar, Ashley M. Butler, Latanya Hammonds-Odie, Elizabeth G. Atkinson, Kim Worley, Debra D. Murray, Brendan Lee, Steven E. Scherer
J. Am. Medical Informatics Assoc.1
2008 cneViewer: a database of conserved non-coding elements for studies of tissue-specific gene regulation
abstract
There are thousands of strongly conserved non-coding elements (CNEs) in vertebrate genomes, and their functions remain largely unknown. However, without biologically relevant criteria for prioritizing them, selecting a particular CNE sequences to study can be haphazard. To address this problem, we present cneViewer-a database and webtool that systematizes information on conserved non-coding DNA elements in zebrafish. A key feature here is the ability to search for CNEs that may be relevant to tissue-specific gene regulation, based on known developmental expression patterns of nearby genes. cneViewer provides this and other organizing features that significantly facilitate experimental design and CNE analysis.
Jason Persampieri, Deborah I. Ritter, Daniel Lees, Jessica Lehoczky, Su Guo, Jeffrey H. Chuang
Bioinform.2