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M. Fumoto

dblp:21/6541 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 1993
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › protein structure prediction › protein folding
protein folding simulation
0.011993
Development of simulation models for protein folding in a thermal annealing process - I: A simulation of BPTI folding by the pearl necklace model · Comput. Appl. Biosci. 1993
Bioinformatics and computational biology
protein structure prediction
0.011993
Development of simulation models for protein folding in a thermal annealing process - I: A simulation of BPTI folding by the pearl necklace model · Comput. Appl. Biosci. 1993

Methods — techniques the papers use, named apart from their topics

pearl necklace model · 0.0molecular dynamics simulation · 0.0
YearPublicationVenuePosition
1993 Development of simulation models for protein folding in a thermal annealing process - I: A simulation of BPTI folding by the pearl necklace model
abstract
A model system is proposed to simulate the folding processes of proteins during thermal annealing. This system consists of four subsystems: (i) the pearl necklace model with isotropic inter-residue interactions; (ii) the extended pearl necklace model with anisotropic interaction potentials; (iii) molten globule phase dynamics; and (iv) final generation of the three-dimensional structure of a given protein. In this paper results obtained with the pearl necklace model are reported. This model consists of spherical elements and virtual bonds of 3.8 A in length and is intended to simulate dynamical processes at relatively high temperature where entropic terms play a dominant role. Inter-residue interactions are composed of spherical soft repulsive potentials and hydrophobic interactions inherent to respective residues. A simulation of folding processes of BPTI starting from the fully extended conformation indicated that intermediates, even at early stages of folding, are not randomly coiled but assume organized structures that resemble, to some extent, the native conformation.
T. Karasawa, K. Tabuchi, M. Fumoto, T. Yasukawa
Comput. Appl. Biosci.3