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David Kainer

dblp:229/7044 · DBLP profile ↗
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2ranked-venue papers
0as first author
0since 2021 · last 2019
0000-0001-7271-4676ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Systems, architecture and hardware · 1Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 78% Medical and health informatics · 22%

Topics — the 4 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › genomics
computational genomics		 0.412019
MinIONQC: fast and simple quality control for MinION sequencing data · Bioinform. 2019
Bioinformatics and computational biology › sequence analysis › sequencing data processing
sequencing quality control		 0.412019
MinIONQC: fast and simple quality control for MinION sequencing data · Bioinform. 2019
Bioinformatics and computational biology
genomics		 0.312018
Attacking the opioid epidemic: determining the epistatic and pleiotropic genetic architectures for chronic pain and opioid addiction · SC 2018
Bioinformatics and computational biology › sequence analysis
sequencing data analysis		 0.112019
MinIONQC: fast and simple quality control for MinION sequencing data · Bioinform. 2019

Methods — techniques the papers use, named apart from their topics

quality metrics · 0.4diagnostic plots · 0.4pleiotropy analysis · 0.3epistasis analysis · 0.3
YearPublicationVenuePosition
2019 MinIONQC: fast and simple quality control for MinION sequencing data
abstract
Summary: MinIONQC provides rapid diagnostic plots and quality control data from one or more flowcells of sequencing data from Oxford Nanopore Technologies' MinION instrument. It can be used to assist with the optimisation of extraction, library preparation, and sequencing protocols, to quickly and directly compare the data from many flowcells, and to provide publication-ready figures summarising sequencing data. Availability and implementation: MinIONQC is implemented in R and released under an MIT license. It is available for all platforms from https://github.com/roblanf/minion_qc.
Robert Lanfear, Miriam Schalamun, David Kainer, Benjamin Schwessinger
 Bioinform.3
2018 Attacking the opioid epidemic: determining the epistatic and pleiotropic genetic architectures for chronic pain and opioid addiction
Wayne Joubert, Deborah A. Weighill, David Kainer, Sharlee Climer, Amy Justice, Kjiersten Fagnan, Daniel A. Jacobson
 SC3