We have developed a novel algorithm for cluster analysis that is based on graph theoretic techniques. A similarity graph is defined and clusters in that graph correspond to highly connected subgraphs. A polynomial algorithm to compute them efficiently is presented. Our algorithm produces a clustering with some provably good properties. The application that motivated this study was gene expression analysis, where a collection of cDNAs must be clustered based on their oligonucleotide fingerprints. The algorithm has been tested intensively on simulated libraries and was shown to outperform extant methods. It demonstrated robustness to high noise levels. In a blind test on real cDNA fingerprint data the algorithm obtained very good results. Utilizing the results of the algorithm would have saved over 70% of the cDNA sequencing cost on that data set. 1 Introduction Cluster analysis seeks grouping of data elements into subsets, so that elements in the same subset are in some sense more cl...

An object recognition system based on the dynamic link architecture, an extension to classical artificial neural networks (ANNs), is presented. The dynamic link architecture exploits correlations in the fine-scale temporal structure of cellular signals to group neurons dynamically into higher-order entities. These entities represent a rich structure and can code for high-level objects. To demonstrate the capabilities of the dynamic link architecture, a program was implemented that can recognize human faces and other objects from video images. Memorized objects are represented by sparse graphs, whose vertices are labeled by a multiresolution description in terms of a local power spectrum, and whose edges are labeled by geometrical distance vectors. Object recognition can be formulated as elastic graph matching, which is performed here by stochastic optimization of a matching cost function. The implementation on a transputer network achieved recognition of human faces and office objects from gray-level camera images. The performance of the program is evaluated by a statistical analysis of recognition results from a portrait gallery comprising images of 87 persons.>