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Ziyue Qiao

dblp:259/6341 · DBLP profile ↗
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57ranked-venue papers
10as first author
55since 2021 · last 2026
0000-0002-9485-4861ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 39 · 8 first-author · 37 since 2021Databases, data management, data science and information retrieval · 17 · 3 first-author · 15 since 2021Graphics, computer vision, multimedia, augmented reality and games · 16 · 2 first-author · 16 since 2021Applied, interdisciplinary, general and emerging computing · 7 · 2 first-author · 6 since 2021Computer networks · 2 · 2 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
34 papers
Graph learning · 26% Trustworthy machine learning · 17% Efficient and distributed learning · 13%
Interdisciplinary, comprehensive, and emerging computing
5 papers
Bioinformatics and computational biology · 94% Computational science and engineering · 4% Computational social science and digital humanities · 2%
Databases, data mining, and information retrieval
5 papers
Data mining · 47% Recommender systems · 37% Machine learning and data management · 16%
Human-computer interaction and pervasive computing
3 papers
Wearable and physiological sensing · 65% Interaction techniques and input · 30% Learning and educational technologies · 5%

Topics — the 30 heaviest of 84, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Machine learning › Graph learning
graph neural network
5.482025
Refining Norms: A Post-hoc Framework for OOD Detection in Graph Neural Networks · NeurIPS 2025
SpectralGap: Graph-Level Out-of-Distribution Detection via Laplacian Eigenvalue Gaps · IJCAI 2025
NeuBM: Mitigating Model Bias in Graph Neural Networks Through Neutral Input Calibration · IJCAI 2025
Machine learning › Representation and self-supervised learning › contrastive learning
graph contrastive learning
3.542025
GPS: graph contrastive learning via multi-scale augmented views from adversarial pooling · Sci. China Inf. Sci. 2025
Rethinking Graph Contrastive Learning Through Relative Similarity Preservation · IJCAI 2025
Single-View Graph Contrastive Learning with Soft Neighborhood Awareness · AAAI 2025
Machine learning › Trustworthy machine learning › robustness
out-of-distribution detection
3.542025
Refining Norms: A Post-hoc Framework for OOD Detection in Graph Neural Networks · NeurIPS 2025
Activation Shape Matters: OOD Detection with Norm-Entropy Fusion · ACM Multimedia 2025
SpectralGap: Graph-Level Out-of-Distribution Detection via Laplacian Eigenvalue Gaps · IJCAI 2025
Machine learning › Transfer learning and domain adaptation › domain adaptation
graph domain adaptation
3.442026
DisCo: Diffusion-guided Unbiased Discriminative Learning for Unsupervised Graph Domain Adaptation · KDD (1) 2026
PALA: Class-imbalanced Graph Domain Adaptation via Prototype-anchored Learning and Alignment · IJCAI 2025
GCAL: Adapting Graph Models to Evolving Domain Shifts · ICML 2025
Machine learning › Trustworthy machine learning
robustness
2.032026
Refining Norms: A Post-hoc Framework for OOD Detection in Graph Neural Networks · NeurIPS 2025
Gradient Short-Circuit: Efficient Out-of-Distribution Detection via Feature Intervention · ICCV 2025
Calibrating Inference Time Alignment with Sequence-level Risk Accumulation · ACL (1) 2026
Machine learning › Transfer learning and domain adaptation
domain adaptation
1.922026
Graph Cross-Domain Continual Fine-Tuning via Orthogonal LoRA Routing with Contrastive Expert Specialization · WWW 2026
GCAL: Adapting Graph Models to Evolving Domain Shifts · ICML 2025
Machine learning › Efficient and distributed learning › parameter-efficient fine-tuning
low-rank adaptation
1.922026
Graph Cross-Domain Continual Fine-Tuning via Orthogonal LoRA Routing with Contrastive Expert Specialization · WWW 2026
Train with Perturbation, Infer after Merging: A Two-Stage Framework for Continual Learning · NeurIPS 2025
Machine learning › Efficient and distributed learning
parameter-efficient fine-tuning
1.922026
Graph Cross-Domain Continual Fine-Tuning via Orthogonal LoRA Routing with Contrastive Expert Specialization · WWW 2026
Train with Perturbation, Infer after Merging: A Two-Stage Framework for Continual Learning · NeurIPS 2025
Bioinformatics and computational biology › multi-omics data integration
spatial multi-omics integration
1.922026
GROVER: Graph-guided Representation of Omics and Vision with Expert Regulation for Adaptive Spatial Multi-omics Fusion · AAAI 2026
PRAGA: Prototype-aware Graph Adaptive Aggregation for Spatial Multi-modal Omics Analysis · AAAI 2025
Machine learning › Trustworthy machine learning
fairness
1.722025
Fourier Clouds: Fast Bias Correction for Imbalanced Semi-Supervised Learning · NeurIPS 2025
NeuBM: Mitigating Model Bias in Graph Neural Networks Through Neutral Input Calibration · IJCAI 2025
Natural language and speech › Information extraction and text analysis
text classification
1.222023
Hierarchical Interdisciplinary Topic Detection Model for Research Proposal Classification · IEEE Trans. Knowl. Data Eng. 2023
Expert Knowledge-Guided Length-Variant Hierarchical Label Generation for Proposal Classification · ICDM 2021
Natural language and speech › Language models and text generation
alignment
1.012026
Calibrating Inference Time Alignment with Sequence-level Risk Accumulation · ACL (1) 2026
Machine learning › Graph learning › graph neural network training
continual graph learning
1.012026
Graph Cross-Domain Continual Fine-Tuning via Orthogonal LoRA Routing with Contrastive Expert Specialization · WWW 2026
Machine learning › Trustworthy machine learning › uncertainty estimation › neural network uncertainty
evidential deep learning
1.012026
Long-Tailed Recognition of Evidential Experts for Graph-level Classification · WWW 2026
Machine learning › Graph learning › graph neural network
graph convolutional network
1.012026
GROVER: Graph-guided Representation of Omics and Vision with Expert Regulation for Adaptive Spatial Multi-omics Fusion · AAAI 2026
Machine learning › Graph learning › graph classification
graph-level classification
1.012026
Long-Tailed Recognition of Evidential Experts for Graph-level Classification · WWW 2026
Machine learning › Graph learning
graph representation learning
1.012026
DisCo: Diffusion-guided Unbiased Discriminative Learning for Unsupervised Graph Domain Adaptation · KDD (1) 2026
Machine learning › Efficient and distributed learning
inference efficiency
1.012026
Evolving Sparsity: Leveraging Token Importance Dynamics for Efficient LLM Decoding with Sparse Attention · ACL (1) 2026
Natural language and speech › Language models and text generation › alignment
inference-time alignment
1.012026
Calibrating Inference Time Alignment with Sequence-level Risk Accumulation · ACL (1) 2026
Machine learning › Efficient and distributed learning › KV cache management
KV cache compression
1.012026
Evolving Sparsity: Leveraging Token Importance Dynamics for Efficient LLM Decoding with Sparse Attention · ACL (1) 2026
Natural language and speech › Language models and text generation › large language model inference
long-context inference
1.012026
Evolving Sparsity: Leveraging Token Importance Dynamics for Efficient LLM Decoding with Sparse Attention · ACL (1) 2026
Machine learning › Learning paradigms
long-tailed recognition
1.012026
Long-Tailed Recognition of Evidential Experts for Graph-level Classification · WWW 2026
Machine learning › Efficient and distributed learning
on-device inference
1.012026
Reinforcement Learning Based Model Adaptation and Partition for Dynamic DNN Empowered Mobile Vision · IEEE Trans. Mob. Comput. 2026
Machine learning › Deep learning architectures and training › attention mechanism
sparse attention
1.012026
Evolving Sparsity: Leveraging Token Importance Dynamics for Efficient LLM Decoding with Sparse Attention · ACL (1) 2026
Machine learning › Trustworthy machine learning
uncertainty estimation
1.012026
Long-Tailed Recognition of Evidential Experts for Graph-level Classification · WWW 2026
Bioinformatics and computational biology
data integration
1.012026
Evidence-aware Integration and Domain Identification of Spatial Transcriptomics Data · AAAI 2026
Bioinformatics and computational biology › protein structure analysis
protein domain identification
1.012026
Evidence-aware Integration and Domain Identification of Spatial Transcriptomics Data · AAAI 2026
Bioinformatics and computational biology › transcriptomics
spatial transcriptomics
1.012026
Evidence-aware Integration and Domain Identification of Spatial Transcriptomics Data · AAAI 2026
Data mining
time series analysis
1.012026
Shift-Resilient Diffusive Imputation for Variable Subset Forecasting · WWW 2026
Edge and fog computing
mobile edge computing
1.012026
Reinforcement Learning Based Model Adaptation and Partition for Dynamic DNN Empowered Mobile Vision · IEEE Trans. Mob. Comput. 2026

Methods — techniques the papers use, named apart from their topics

contrastive learning · 5.6diffusion model · 3.0graph neural network · 3.0pseudo-labeling · 2.5multimodal fusion · 2.0kolmogorov-arnold network · 2.0dynamic expert routing · 2.0reinforcement learning · 1.9adversarial learning · 1.7hierarchical transformer · 1.3uncertainty-aware reconstruction · 1.0spatial regularization · 1.0risk accumulation · 1.0prototype-based evidence-aware learning · 1.0multi-scale attention fusion · 1.0imputation · 1.0ford-fulkerson algorithm · 1.0adversarial feature disentanglement · 1.0
YearPublicationVenuePosition
2026 GROVER: Graph-guided Representation of Omics and Vision with Expert Regulation for Adaptive Spatial Multi-omics Fusion
abstract
Effectively modeling multimodal spatial omics data is critical for understanding tissue complexity and underlying biological mechanisms. While spatial transcriptomics, proteomics, and epigenomics capture molecular features, they lack pathological morphological context. Integrating these omics with histopathological images is thus critical for comprehensive disease tissue analysis. However, substantial heterogeneity across omics, imaging, and spatial modalities poses significant challenges. Naive fusion of semantically distinct sources often leads to ambiguous representations. Additionally, the resolution mismatch between high-resolution histology images and lower-resolution sequencing spots complicates spatial alignment. Biological perturbations during sample preparation further distort modality-specific signals, hindering accurate integration. To address these challenges, we propose Graph-guided Representation of Omics and Vision with Expert Regulation for Adaptive Spatial Multi-omics Fusion (GROVER), a novel framework for adaptive integration of spatial multi-omics data. GROVER leverages a Graph Convolutional Network encoder based on Kolmogorov–Arnold Networks to capture the nonlinear dependencies between each modality and its associated spatial structure, thereby producing expressive, modality-specific embeddings. To align these representations, we introduce a spot-feature-pair contrastive learning strategy that explicitly optimizes the correspondence across modalities at each spot. Furthermore, we design a dynamic expert routing mechanism that adaptively selects informative modalities for each spot while suppressing noisy or low-quality inputs. Experiments on real-world spatial omics datasets demonstrate that GROVER outperforms state-of-the-art baselines, providing a robust and reliable solution for multimodal integration.
Yongjun Xiao, Dian Meng, Xinlei Huang, Yanran Liu, Shiwei Ruan, Ziyue Qiao, Xubin Zheng
AAAI6
2026 Evidence-aware Integration and Domain Identification of Spatial Transcriptomics Data
abstract
Spatial transcriptomics (ST) enables joint profiling of gene expression and spatial positions, thereby revealing spatially resolved biological functions. However, many existing ST analysis methods often fail to explicitly quantify the belief and uncertainty in decisions caused by noisy ST data, making it difficult to handle spots of varying quality in a fine-grained manner. In addition, domain identification is a fundamental and critical task in ST, but commonly used models that separate expression learning and clustering often struggle to learn cluster-friendly latent representations effectively. To address these issues, we propose PREST, a prototype-based evidence-aware integration framework for ST data. PREST performs multi-scale representation learning with fine-grained attention fusion and introduces learnable class prototypes to quantify belief and uncertainty in model decisions. We aim to align overall belief scores with latent semantic information to enhance uncertainty quantification and prototype learning, thereby promoting the learning of clustering-friendly representations. PREST further integrates an uncertainty-aware reconstruction module and spatial regularization to reduce overfitting to unreliable spots and promote denoised, discriminative representations. Extensive experiments on several benchmark datasets validate the effectiveness and superiority of our proposed PREST across various downstream tasks.
Wei Zhang 0399, Siyu Yi, Lezhi Chen, Yifan Wang 0014, Ziyue Qiao, Wei Ju 0001
AAAI5
2026 Evolving Sparsity: Leveraging Token Importance Dynamics for Efficient LLM Decoding with Sparse Attention
abstract
Efficient long-context inference remains a major challenge for large language models (LLMs), as the cost of attention computation during auto-regressive decoding grows linearly with the context length.Recent sparse attention methods attempt to reduce the computational burden by selecting a subset of tokens at each step, while most rely on static importance scores that are repeatedly computed over the entire cache, overlooking the relational dynamics of the decoding process.In this work, we revisit sparse attention in LLMs and propose to model token importance as a dynamic process that evolves over decoding steps and propagates through model layers.To efficiently measure token importance, we propose two lightweight mechanisms: (1) Cross-Step Accumulation, which incrementally maintains long-term, query-agnostic importance via decayed accumulation of sparse attention scores, avoiding recomputing the importance of decoded tokens; and (2) Cross-Layer Propagation, which leverages the model's intrinsic Retrieval Heads to compute query-aware indices and efficiently propagate them across layers; Together, these mechanisms preserve both stable context memory and adaptive query relevance while reduce redundant computation.We evaluate our approach on PG-19, RULER, LongBench, and mathematical reasoning benchmarks using models employing Multi-Head and Grouped-Query Attention.Under varying KV cache budgets, our method consistently outperforms prior sparse attention baselines, approaches full attention performance in most settings, and achieves speedups of up to 5.36× for attention latency and 2.33× for end-to-end decoding.Our code is available at: https://github.com/iLearn-Lab/ACL26- EvoSparse.
Ruizi Han, Miao Zhang 0022, Ziyue Qiao, Liqiang Nie
ACL (1)3
2026 Calibrating Inference Time Alignment with Sequence-level Risk Accumulation
abstract
Shanwen Tan, Ziyang Dong, Wei Ju, Yiwei Fu, Hao Wu, Kun Wang, Yifan Wang, Ziyue Qiao. Proceedings of the 64th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers). 2026.
Shanwen Tan, Ziyang Dong, Wei Ju 0001, Yiwei Fu, Kun Wang 0056, Yifan Wang 0014, Ziyue Qiao
ACL (1)8
2026 DisCo: Diffusion-guided Unbiased Discriminative Learning for Unsupervised Graph Domain Adaptation
abstract
This paper investigates the task of unsupervised graph domain adaptation, which facilitates the transfer of knowledge from labeled source graphs to unlabeled target graphs. Recent approaches usually utilize graph contrastive learning and pseudo-labeling to learn from unlabeled target data, which could introduce potential biased representations and supervision of target graphs resulting from serious shifts across two domains. Towards this end, we propose a novel framework named Diffusion-guided Unbiased Discriminative Learning (DisCo) for unsupervised graph domain adaptation. The core of our DisCo is to leverage both feature disentanglement and cross-domain diffusion signals to remove the potential biases for target graphs. In particular, we first utilize adversarial feature disentanglement to extract causal features that are orthogonal to domain biases. More importantly, we retrieve the labels of cross-domain source graphs to generate the conditions, which would be utilized to optimize a diffusion model for label denoising. The consistency between pseudo-labels and denoised labels is measured to reduce the potential biases during domain alignment. Extensive experiments on several real-world benchmarks demonstrate that our proposed DisCo consistently outperforms competing state-of-the-art baselines.
Tao Ren 0002, Changhu Wang, Yifan Wang 0014, Wei Ju 0001, Huaizhi Tang, Junyu Luo 0002, Zimo Wang, Ziyue Qiao, Xian-Sheng Hua 0001, Xiao Luo 0001
KDD (1)9
2026 Graph Cross-Domain Continual Fine-Tuning via Orthogonal LoRA Routing with Contrastive Expert Specialization
abstract
This paper investigates a novel and critical problem of Graph Cross-Domain Continual Fine-Tuning, which aims to adapt a large pre-trained Graph Foundation Model across diverse domains. Existing continual graph learning methods are mostly limited to incremental settings within only a single domain, and are typically trained from scratch. As a result, they fail to handle cross-domain shifts effectively, suffer from severe forgetting, and lack transferability. To address these challenges, we present G-CORMoL, Graph Continual Fine-tuning with Orthogonal, Router-driven Mixture of LoRA experts. G-CORMoL achieves effective adaptation while preserving prior knowledge by enforcing mathematical orthogonality between expert LoRA adapters, thereby eliminating interference across tasks. It further supports cross-domain knowledge transfer through a symmetric dual-driven routing mechanism that learns a global composition policy over all learned LoRA experts. In addition, it promotes expert specialization via a contrastive objective with theoretical guarantees. Extensive experiments on different cross-domain task orders demonstrate that G-CORMoL achieves robust state-of-the-art performance, not only preventing catastrophic forgetting but also leveraging accumulated knowledge to enable positive transfer.
Qianyi Cai, Ziyue Qiao, Xiao Luo 0001, Hui Xiong 0001
WWW2
2026 Long-Tailed Recognition of Evidential Experts for Graph-level Classification
abstract
Graph-level classification involves analyzing the property of the whole graph, which is typically solved by using graph neural networks (GNNs). Existing efforts generally assume a balanced class distribution. However, real-world data often exhibit long-tailed distributions, i.e., tail classes have significantly fewer samples than head classes, and thus directly applying GNNs is eventually biased toward the head classes, resulting in limited generalization over the tail classes. Moreover, the predictions of existing algorithms are usually not trustworthy, and the trained classifiers remain ignorant to their predictive confidence. Towards this end, in this paper we develop a principled framework called GraphEVER for long-tailed graph-level classification. Technically, GraphEVER incorporates the beliefs of multiple experts and leverages the idea of subjective logic within the Dempster-Shafer Evidence Theory (DST). It can provide the evidence and uncertainty estimation for each expert, where the evidence is parameterized by a Dirichlet distribution to model class probability distribution, and the uncertainty is quantified via a well-defined theoretical framework. In this way, diverse experts can be integrated under DST to endow the classifier with both reliability and robustness. Moreover, we propose an evidence-based routing mechanism to dynamically assign experts, such that the tail classes can receive more attention, while the head classes can reduce redundant engaged experts, further cutting down the computational cost and improving the efficiency. Extensive experiments on seven datasets verify the superiority of our proposed framework.
Wei Ju 0001, Siyu Yi, Zhengyang Mao, Yifang Qin, Yifan Wang 0014, Zhiping Xiao 0001, Yiwei Fu, Ziyue Qiao, Ming Zhang 0004
WWW8
2026 Shift-Resilient Diffusive Imputation for Variable Subset Forecasting
Haihua Xu 0005, Qi Hao 0001, Jianpeng Zhao 0001, Ziyue Qiao, Lu Jiang 0007, Pengfei Wang 0008, Yingjie Zhou 0001, Pengyang Wang
WWW5
2026 Continual Test-Time Training on Graphs via Adaptive Prompts Integration
abstract
This paper investigates a novel and critical problem of Graph Continual Test-Time Training, which aims to enable a frozen pre-trained graph model to adapt continuously to evolving out-of-distribution (OOD) graphs without supervision. Existing test-time training methods primarily focus on one-step adaptation and overlook long-term knowledge retention, while conventional continual learning approaches rely on labeled data and static memory replay. Consequently, they are unable to handle sequential OOD domains effectively, often suffering from severe forgetting and limited efficiency in dynamic graph environments. To address these challenges, we propose DPCGL (Dynamic Prompts-based Continual Graph Learning), a data-centric framework that performs continual test-time training through adaptive prompt optimization. DPCGL freezes the pre-trained backbone and maintains a dynamic prompt pool, where prompts are adaptively selected and updated for each incoming graph domain. This design enables parameter-efficient adaptation and mitigates forgetting by organizing transferable knowledge within prompts rather than model weights. Furthermore, DPCGL jointly optimizes three objectives: similarity alignment for representativeness, KL divergence regularization for knowledge preservation, and diversity constraint for generalization, providing both stability and adaptability during continual adaptation. Extensive experiments on multiple evolving OOD graph benchmarks demonstrate that DPCGL achieves state-of-the-art performance, effectively alleviating catastrophic forgetting and enabling robust continual adaptation across domains.
Qianyi Cai, Ziyue Qiao, Rui Cai 0006, Huijie Liu 0001, Junyi Li 0006, Xiao Luo 0001, Hui Xiong 0001
IEEE Trans. Pattern Anal. Mach. Intell.2
2026 Bridging the Subpopulation Gap: A New Paradigm for Robust Fault Diagnosis in Rotating Machinery
abstract
This article introduces a ground breaking approach to rotating machinery fault diagnosis by addressing the critical, yet unexplored challenge of subpopulation shift. We present the first study to consider this in the domain, introducing a novel framework combining label propagation with time–frequency consistency regularization. Motivated by limitations of existing domain adaptation methods, we propose a unique dataset partitioning strategy that models subpopulation structures within fault categories. Our approach leverages a bridging distribution to facilitate knowledge transfer across domains with different subpopulation compositions. Theoretical analysis provides performance guarantees, while experiments on real-world bearing datasets demonstrate superior performance across various transfer learning scenarios. The proposed method consistently outperforms state-of-the-art techniques in multiple adaptation settings. By pioneering subpopulation shift consideration and introducing an innovative dataset preparation method, this work significantly advances rotating machinery fault diagnosis, offering a more reliable solution for complex industrial applications. The proposed framework directly addresses critical industrial challenges by enabling robust fault diagnosis across varying operating conditions, which helps reduce maintenance costs and prevent unexpected equipment failures in manufacturing plants.
Jiawei Gu, Xiangxiang Yuan, Yanxue Wang, Ziyue Qiao, Hui Xiong 0001
IEEE Trans. Ind. Informatics5
2026 Reinforcement Learning Based Model Adaptation and Partition for Dynamic DNN Empowered Mobile Vision
abstract
Most mobile vision systems adopt background subtraction or task offloading, but inference performance remains constrained by background dynamics. Dynamic deep neural networks (DNNs) scale computation without relying on historical information. However, a dynamic DNN tuned to a specific spatial granularity cannot excel across all images. For example, resolution level models perform well on images with sparse and large objects but poorly on images with dense and small objects. Changing system overheads make the choice of an optimal edge-assisted scheme for dynamic DNNs difficult. In this paper, we propose an efficient reinforcement-learning-based model adaptation and partition scheme for mobile vision empowered by dynamic DNNs, which jointly adapts the backbone network and the partition point of the inference model to accelerate inference without degrading inference accuracy. The scheme selects hyperparameters for dynamic DNNs, such as spatial granularity and complexity level, based on image characteristics and measured performance without relying on previous frames. A model partition algorithm is proposed to split the changing inference model in polynomial complexity using the Ford–Fulkerson algorithm. Experimental results based on object detection and image classification show that the proposed scheme reduces inference latency and energy consumption by over 71.2% and 31.8%, without degrading inference accuracy compared to the benchmarks.
Liang Xiao 0003, Tuhao Li, Zefang Lv, Ziyue Qiao, Hui Xiong 0001
IEEE Trans. Mob. Comput.5
2026 Adapting Graph Models via Target Integrity Assessment and Source Distribution Hypothesis
abstract
This article addresses the challenge of domain adaptation on graphs, a specialized form of graph transfer learning (GTL), which involves adapting a graph model trained on source graphs to unlabeled target graphs that significantly differ in distribution. Traditional methods often rely heavily on the source graph to transfer learned task knowledge, but certain situations may render the source graph unavailable or restricted due to privacy or security concerns, thus impeding the usability and flexibility of graph model adaptation. Therefore, this article studies the problem of source-free domain adaptation (SFDA) in graph transfer learning (GTL). Our objective is to adapt a pretrained model to effectively operate on the target graph without the need to access the source graph. To achieve this, we first incorporate a weighted information maximization loss to enhance the model's discriminative ability on the target graph, where we introduce the concept of posterior integrities of target nodes to assess their optimization confidence. Then, we estimate the distributions of the source graph and generate synthesized source nodes. We propose a reconstruction decoder to enhance the authenticity of the synthesized nodes and use adversarial learning to align the distributions between graphs, leading to improved adaptation of the model. Finally, extensive experimental results on a range of publicly accessible datasets demonstrate the superior performance of our method over the state of the art.
Ziyue Qiao, Xiaomin Yu, Weiyu Guo, Xiao Luo 0001, Meng Xiao 0001, Hui Xiong 0001
IEEE Trans. Neural Networks Learn. Syst.1
2025 PRAGA: Prototype-aware Graph Adaptive Aggregation for Spatial Multi-modal Omics Analysis
abstract
Spatial multi-modal omics technology, highlighted by Nature Methods as an advanced biological technique in 2023, plays a critical role in resolving biological regulatory processes with spatial context. Recently, graph neural networks based on K-nearest neighbor (KNN) graphs have gained prominence in spatial multi-modal omics methods due to their ability to model semantic relations between sequencing spots. However, the fixed KNN graph fails to capture the latent semantic relations hidden by the inevitable data perturbations during the biological sequencing process, resulting in the loss of semantic information. In addition, the common lack of spot annotation and class number priors in practice further hinders the optimization of spatial multi-modal omics models. Here, we propose a novel spatial multi-modal omics resolved framework, termed Prototype-aware Graph Adaptative Aggregation for Spatial Multi-modal Omics Analysis (PRAGA). PRAGA constructs a dynamic graph to capture latent semantic relations and comprehensively integrate spatial information and feature semantics. The learnable graph structure can also denoise perturbations by learning cross-modal knowledge. Moreover, a dynamic prototype contrastive learning is proposed based on the dynamic adaptability of Bayesian Gaussian Mixture Models to optimize the multi-modal omics representations for unknown biological priors. Quantitative and qualitative experiments on simulated and real datasets with 7 competing methods demonstrate the superior performance of PRAGA.
Xinlei Huang, Zhiqi Ma, Dian Meng, Yanran Liu, Shiwei Ruan, Qingqiang Sun, Xubin Zheng, Ziyue Qiao
AAAI8
2025 Cluster-guided Contrastive Class-imbalanced Graph Classification
abstract
This paper studies the problem of class-imbalanced graph classification, which aims at effectively classifying the graph categories in scenarios with imbalanced class distributions. While graph neural networks (GNNs) have achieved remarkable success, their modeling ability on imbalanced graph-structured data remains suboptimal, which typically leads to predictions biased towards the majority classes. On the other hand, existing class-imbalanced learning methods in vision may overlook the rich graph semantic substructures of the majority classes and excessively emphasize learning from the minority classes. To address these challenges, we propose a simple yet powerful approach called C3GNN that integrates the idea of clustering into contrastive learning to enhance class-imbalanced graph classification. Technically, C3GNN clusters graphs from each majority class into multiple subclasses, with sizes comparable to the minority class, mitigating class imbalance. It also employs the Mixup technique to generate synthetic samples, enriching the semantic diversity of each subclass. Furthermore, supervised contrastive learning is used to hierarchically learn effective graph representations, enabling the model to thoroughly explore semantic substructures in majority classes while avoiding excessive focus on minority classes. Extensive experiments on real-world graph benchmark datasets verify the superior performance of our proposed method against competitive baselines.
Wei Ju 0001, Zhengyang Mao, Siyu Yi, Yifang Qin, Yiyang Gu, Zhiping Xiao 0001, Jianhao Shen, Ziyue Qiao, Ming Zhang 0004
AAAI8
2025 Single-View Graph Contrastive Learning with Soft Neighborhood Awareness
abstract
Most graph contrastive learning (GCL) methods heavily rely on cross-view contrast, thus facing several concomitant challenges, such as the complexity of designing effective augmentations, the potential for information loss between views, and increased computational costs. To mitigate reliance on cross-view contrasts, we propose SIGNA, a novel single-view graph contrastive learning framework. Regarding the inconsistency between structural connection and semantic similarity of neighborhoods, we resort to soft neighborhood awareness for GCL. Specifically, we leverage dropout to obtain structurally-related yet randomly-noised embedding pairs for neighbors, which serve as potential positive samples. At each epoch, the role of partial neighbors is switched from positive to negative, leading to probabilistic neighborhood contrastive learning effect. Moreover, we propose a normalized Jensen-Shannon divergence estimator for a better effect of contrastive learning. Experiments on diverse node-level tasks demonstrate that our simple single-view GCL framework consistently outperforms existing methods by margins of up to 21.74% (PPI). In particular, with soft neighborhood awareness, SIGNA can adopt MLPs instead of complicated GCNs as the encoder in transductive learning tasks, thus speeding up its inference process by 109× to 331×.
Qingqiang Sun, Chaoqi Chen, Ziyue Qiao, Xubin Zheng
AAAI3
2025 A Survey on Foundation Language Models for Single-cell Biology
abstract
Fan Zhang, Hao Chen, Zhihong Zhu, Ziheng Zhang, Zhenxi Lin, Ziyue Qiao, Yefeng Zheng, Xian Wu. Proceedings of the 63rd Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers). 2025.
Fan Zhang 0111, Hao Chen 0011, Zhihong Zhu 0001, Zhenxi Lin, Ziyue Qiao, Yefeng Zheng 0001, Xian Wu 0001
ACL (1)6
2025 On the Cross-type Homophily of Heterogeneous Graphs: Understanding and Unleashing
abstract
Homophily, the tendency of similar nodes to connect, is a fundamental phenomenon in network science and a critical factor in the performance of graph neural networks (GNNs). While existing studies primarily explore homophily in homogeneous graphs, where nodes share the same type, real-world networks are often more accurately modeled as heterogeneous graphs (HGs) with diverse node types and intricate cross-type interactions. This structural diversity complicates the analysis of homophily, as traditional homophily metrics fail to account for distinct label spaces across node types. To address this limitation, we introduce the Cross-Type Homophily Ratio (CHR), a novel metric that quantifies homophily based on the similarity of target information across different node types. Additionally, we propose Cross-Type Homophily-guided Graph Editing (CTHGE), a novel method for improving heterogeneous graph neural networks (HGNNs) performance by optimizing cross-type connectivity using Cross-Type Homophily Ratio. Extensive experiments on five HG datasets with nine HGNNs validate the effectiveness of CTHGE, which delivers a maximum relative performance improvement of over 25% for HGNNs on node classification tasks, offering a fresh perspective on cross-type homophily in HGs learning.
Ziyue Qiao, Chaoqi Chen, Zhengyi Yang 0001, Lun Du, Qingqiang Sun
CIKM2
2025 Reinforcement Learning Based Edge-Assisted Dynamic Inference for Mobile Vision
abstract
Mobile device can deploy high-complexity vision tasks by reducing spatial redundancy in the inference of deep neural networks (DNNs) and offloading computations to remote servers via wireless channels. However, a trained DNN model with fixed network architecture faces challenges in dynamic scenarios with less overlap between previous and current frames. In this paper, we propose a RL-based edge-assisted mobile vision scheme based on dynamic DNN models to balance inference latency and capacity without relying on historical information for dynamic visual scenarios. This scheme optimizes the hyperparameter settings and complexity level of dynamic neural networks as well as the collaborative server and the partition points of the DAG structured inference model. Based on the image embeddings, channel gain, and previous inference performance, the inference policy is selected to optimize the utility function, which is a weighted sum of inference latency, local energy consumption, and inference accuracy. Experimental results demonstrate the performance improvements of our proposed scheme over the benchmarks.
Liang Xiao 0003, Tuhao Li, Zefang Lv, Ziyue Qiao, Hui Xiong 0001
GLOBECOM5
2025 Gradient Short-Circuit: Efficient Out-of-Distribution Detection via Feature Intervention
abstract
Out-of-Distribution (OOD) detection is critical for safely deploying deep models in open-world environments, where inputs may lie outside the training distribution. During inference on a model trained exclusively with In-Distribution (ID) data, we observe a salient gradient phenomenon: around an ID sample, the local gradient directions for "enhancing" that sample's predicted class remain relatively consistent, whereas OOD samples--unseen in training--exhibit disorganized or conflicting gradient directions in the same neighborhood. Motivated by this observation, we propose an inference-stage technique to short-circuit those feature coordinates that spurious gradients exploit to inflate OOD confidence, while leaving ID classification largely intact. To circumvent the expense of recomputing the logits after this gradient short-circuit, we further introduce a local first-order approximation that accurately captures the post-modification outputs without a second forward pass. Experiments on standard OOD benchmarks show our approach yields substantial improvements. Moreover, the method is lightweight and requires minimal changes to the standard inference pipeline, offering a practical path toward robust OOD detection in real-world applications.
Jiawei Gu, Ziyue Qiao, Zechao Li
ICCV2
2025 Fastft: Accelerating Reinforced Feature Transformation via Advanced Exploration Strategies
abstract
Feature Transformation is crucial for classic machine learning that aims to generate feature combinations to enhance the performance of downstream tasks from a data-centric perspective. Current methodologies, such as manual expert-driven processes, iterative-feedback techniques, and exploration-generative tactics, have shown promise in automating such data engineering workflow by minimizing human involvement. However, three challenges remain in those frameworks: (1) It predominantly depends on downstream task performance metrics, as assessment is time-consuming, especially for large datasets. (2) The diversity of feature combinations will hardly be guaranteed after random exploration ends. (3) Rare significant transformations lead to sparse valuable feedback that hinders the learning processes or leads to less effective results. In response to these challenges, we introduce FASTFT, an innovative framework that leverages a trio of advanced strategies. We first decouple the feature transformation evaluation from the outcomes of the generated datasets via the performance predictor. To address the issue of reward sparsity, we developed a method to evaluate the novelty of generated transformation sequences. Incorporating this novelty into the reward function accelerates the model's exploration of effective transformations, thereby improving the search productivity. Additionally, we combine novelty and performance to create a prioritized memory buffer, ensuring that essential experiences are effectively revisited during exploration. Our extensive experimental evaluations validate the performance, efficiency, and traceability of our proposed framework, showcasing its superiority in handling complex feature transformation tasks11The code and data are publicly accessible via Github..
Tianqi He, Xiaohan Huang 0003, Yi Du 0010, Qingqing Long, Ziyue Qiao, Min Wu 0008, Yanjie Fu, Yuanchun Zhou, Meng Xiao 0001
ICDE5
2025 Towards Continuous Reuse of Graph Models via Holistic Memory Diversification
abstract
This paper addresses the challenge of incremental learning in growing graphs with increasingly complex tasks. The goal is to continuously train a graph model to handle new tasks while retaining proficiency in previous tasks via memory replay. Existing methods usually overlook the importance of memory diversity, limiting in selecting high-quality memory from previous tasks and remembering broad previous knowledge within the scarce memory on graphs. To address that, we introduce a novel holistic Diversified Memory Selection and Generation (DMSG) framework for incremental learning in graphs, which first introduces a buffer selection strategy that considers both intra-class and inter-class diversities, employing an efficient greedy algorithm for sampling representative training nodes from graphs into memory buffers after learning each new task. Then, to adequately rememorize the knowledge preserved in the memory buffer when learning new tasks, a diversified memory generation replay method is introduced. This method utilizes a variational layer to generate the distribution of buffer node embeddings and sample synthesized ones for replaying. Furthermore, an adversarial variational embedding learning method and a reconstruction-based decoder are proposed to maintain the integrity and consolidate the generalization of the synthesized node embeddings, respectively. Extensive experimental results on publicly accessible datasets demonstrate the superiority of DMSG over state-of-the-art methods.
Ziyue Qiao, Junren Xiao, Qingqiang Sun, Meng Xiao 0001, Xiao Luo 0001, Hui Xiong 0001
ICLR1
2025 Revisiting Noise Resilience Strategies in Gesture Recognition: Short-Term Enhancement in sEMG Analysis
abstract
Gesture recognition based on surface electromyography (sEMG) has been gaining importance in many 3D Interactive Scenes. However, sEMG is easily influenced by various forms of noise in real-world environments, leading to challenges in providing long-term stable interactions through sEMG. Existing methods often struggle to enhance model noise resilience through various predefined data augmentation techniques. In this work, we revisit the problem from a short-term enhancement perspective to improve precision and robustness against various common noisy scenarios with learnable denoise using sEMG intrinsic pattern information and sliding-window attention. We propose a Short Term Enhancement Module(STEM), which can be easily integrated with various models. STEM offers several benefits: 1) Noise-resistant, enhanced robustness against noise without manual data augmentation; 2) Adaptability, adaptable to various models; and 3) Inference efficiency, achieving short-term enhancement through minimal weight-sharing in an efficient attention mechanism. In particular, we incorporate STEM into a transformer, creating the Short-Term Enhanced Transformer (STET). Compared with best-competing approaches, the impact of noise on STET is reduced by more than 20\%. We report promising results on classification and regression tasks and demonstrate that STEM generalizes across different gesture recognition tasks. The code is available at https://anonymous.4open.science/r/short_term_semg.
Weiyu Guo, Ziyue Qiao, Ying Sun 0006, Yijie Xu, Hui Xiong 0001
ICML2
2025 GCAL: Adapting Graph Models to Evolving Domain Shifts
abstract
This paper addresses the challenge of graph domain adaptation on evolving, multiple out-of-distribution (OOD) graphs. Conventional graph domain adaptation methods are confined to single-step adaptation, making them ineffective in handling continuous domain shifts and prone to catastrophic forgetting. This paper introduces the Graph Continual Adaptive Learning (GCAL) method, designed to enhance model sustainability and adaptability across various graph domains. GCAL employs a bilevel optimization strategy. The "adapt" phase uses an information maximization approach to fine-tune the model with new graph domains while re-adapting past memories to mitigate forgetting. Concurrently, the "generate memory" phase, guided by a theoretical lower bound derived from information bottleneck theory, involves a variational memory graph generation module to condense original graphs into memories. Extensive experimental evaluations demonstrate that GCAL substantially outperforms existing methods in terms of adaptability and knowledge retention.
Ziyue Qiao, Qianyi Cai, Hao Dong 0010, Jiawei Gu, Pengyang Wang, Meng Xiao 0001, Xiao Luo 0001, Hui Xiong 0001
ICML1
2025 NeuBM: Mitigating Model Bias in Graph Neural Networks Through Neutral Input Calibration
abstract
Graph Neural Networks (GNNs) have shown remarkable performance across various domains, yet they often struggle with model bias, particularly in the presence of class imbalance. This bias can lead to suboptimal performance and unfair predictions, especially for underrepresented classes. We introduce NeuBM (Neutral Bias Mitigation), a novel approach to mitigate model bias in GNNs through neutral input calibration. NeuBM leverages a dynamically updated neutral graph to estimate and correct the inherent biases of the model. By subtracting the logits obtained from the neutral graph from those of the input graph, NeuBM effectively recalibrates the model's predictions, reducing bias across different classes. Our method integrates seamlessly into existing GNN architectures and training procedures, requiring minimal computational overhead. Extensive experiments on multiple benchmark datasets demonstrate that NeuBM significantly improves the balanced accuracy and recall of minority classes, while maintaining strong overall performance. The effectiveness of NeuBM is particularly pronounced in scenarios with severe class imbalance and limited labeled data, where traditional methods often struggle. We provide theoretical insights into how NeuBM achieves bias mitigation, relating it to the concept of representation balancing. Our analysis reveals that NeuBM not only adjusts the final predictions but also influences the learning of balanced feature representations throughout the network.
Jiawei Gu, Ziyue Qiao, Xiao Luo 0001
IJCAI2
2025 SpectralGap: Graph-Level Out-of-Distribution Detection via Laplacian Eigenvalue Gaps
abstract
The task of graph-level out-of-distribution (OOD) detection is crucial for deploying graph neural networks in real-world settings. In this paper, we observe a significant difference in the relationship between the largest and second-largest eigenvalues of the Laplacian matrix for in-distribution (ID) and OOD graph samples: OOD samples often exhibit anomalous spectral gaps (the difference between the largest and second-largest eigenvalues). This observation motivates us to propose SpecGap, an effective post-hoc approach for OOD detection on graphs. SpecGap adjusts features by subtracting the component associated with the second-largest eigenvalue, scaled by the spectral gap, from the high-level features (i.e., X - (λn - λn-1) u_n-1 v_n-1^T). SpecGap achieves state-of-the-art performance across multiple benchmark datasets. We present extensive ablation studies and comprehensive theoretical analyses to support our empirical results. As a parameter-free post-hoc method, SpecGap can be easily integrated into existing graph neural network models without requiring any additional training or model modification.
Jiawei Gu, Ziyue Qiao, Zechao Li
IJCAI2
2025 PALA: Class-imbalanced Graph Domain Adaptation via Prototype-anchored Learning and Alignment
abstract
Graph domain adaptation is a key subfield of graph transfer learning that aims to bridge domain gaps by transferring knowledge from a label-rich source graph to an unlabeled target graph. However, most existing methods assume balanced labels in the source graph, which often fails in practice and leads to biased knowledge transfer. To address this, in this paper, we propose a prototype-anchored learning and alignment framework for class-imbalanced graph domain adaptation. Specifically, we incorporate pointwise node mutual information into the graph encoder to capture high-order topological proximity and learn generalized node representations. Leveraging this, we then introduce categorical prototypes with adversarial proto-instances for prototype-anchored learning and recalibration to represent the source graph under an imbalanced class distribution. Finally, we introduce a weighted prototype contrastive adaptation strategy that aligns target pseudo-labels with source prototypes to handle class imbalance during adaptation. Extensive experiments show that our PALA outperforms the state-of-the-art methods. Our code is available at https://github.com/maxin88scu/PALA.
Yifan Wang 0014, Siyu Yi, Wei Ju 0001, Ziyue Qiao, Chenwei Tang, Jiancheng Lv 0001
IJCAI6
2025 Rethinking Graph Contrastive Learning Through Relative Similarity Preservation
abstract
Graph contrastive learning (GCL) has achieved remarkable success by following the computer vision paradigm of preserving absolute similarity between augmented views. However, this approach faces fundamental challenges in graphs due to their discrete, non-Euclidean nature -- view generation often breaks semantic validity and similarity verification becomes unreliable. Through analyzing 11 real-world graphs, we discover a universal pattern transcending the homophily-heterophily dichotomy: label consistency systematically diminishes as structural distance increases, manifesting as smooth decay in homophily graphs and oscillatory decay in heterophily graphs. We establish theoretical guarantees for this pattern through random walk theory, proving label distribution convergence and characterizing the mechanisms behind different decay behaviors. This discovery reveals that graphs naturally encode relative similarity patterns, where structurally closer nodes exhibit collectively stronger semantic relationships. Leveraging this insight, we propose RELGCL, a novel GCL framework with complementary pairwise and listwise implementations that preserve these inherent patterns through collective similarity objectives. Extensive experiments demonstrate that our method consistently outperforms 20 existing approaches across both homophily and heterophily graphs, validating the effectiveness of leveraging natural relative similarity over artificial absolute similarity.
Zhiyuan Ning 0001, Pengfei Wang 0008, Ziyue Qiao, Pengyang Wang, Yuanchun Zhou
IJCAI3
2025 Deep Graph Clustering with Disentangled Representation Learning
abstract
Deep graph clustering, which aims to uncover the underlying structure within graphs and partition nodes into distinct groups, is a challenging research spot. However, the formation of the cluster in real-world graphs typically governed by the highly complex interaction of many underlying latent factors. Existing methods typically rely on the features and structure associated with the graph, and neglect the entanglement of these factors, resulting in sub-optimal clustering performance. In this paper, we propose a novel deep graph clustering framework named DisenCluster, which learns disentangled representations to simultaneously consider node separation results from diverse perspectives. Specifically, we introduce a disentangled graph encoder that iteratively identifies the latent factors of the input graph by modeling the distribution over different factors for each edge. Subsequently, we utilize a factor-wise contrastive loss to encourage clustering-friendly disentangled representations, allowing us to derive different clustering results based on the corresponding factor. These results are then structured as anchor graphs and seamlessly integrated into a unified graph. Finally, we formulate the framework as a continuous relaxation of the high-order graph cut problem and optimize the objective to obtain effective cluster assignments. Results from experiments on a variety of publicly available datasets further reveal the effectiveness and superiority of our DisenCluster compared with baselines.
Yifan Wang 0014, Yuntai Ding, Yiyang Gu, Ziyue Qiao, Chong Chen 0002, Xian-Sheng Hua 0001, Ming Zhang 0004, Wei Ju 0001
ACM Multimedia4
2025 Activation Shape Matters: OOD Detection with Norm-Entropy Fusion
abstract
Out-of-distribution (OOD) detection is crucial for safe ML deployment, yet neural networks often exhibit overconfidence on unseen data. While activation norms provide useful OOD signals, they remain vulnerable---OOD inputs can artificially inflate norms through sparse, high-magnitude activations, while valid in-distribution samples with moderate norms may be misclassified. We propose that activation distributional shape, not just magnitude, is essential for robust detection. Our method, Activation Norm and Entropy Weighting (ANEW), combines L2-norm (strength) with Shannon entropy (spread) to distinguish between genuine in-distribution patterns and OOD samples, including adversarial examples mimicking high norms via low-entropy spikes. ANEW requires only a single forward pass without retraining, making it highly practical. Extensive experiments across diverse architectures and benchmarks show ANEW significantly outperforms norm-only baselines, reducing both false positives and false negatives in challenging scenarios. Code available upon acceptance.
Jiawei Gu, Ziyue Qiao, Zechao Li
ACM Multimedia2
2025 Refining Norms: A Post-hoc Framework for OOD Detection in Graph Neural Networks
abstract
Graph Neural Networks (GNNs) are increasingly deployed in mission-critical tasks, yet they often encounter inputs that lie outside their training distribution, leading to unreliable or overconfident predictions. To address this limitation, we present RAGNOR (Robust Aggregation Graph Norm for Outlier Recognition), a post-hoc approach that leverages embedding norms for robust out-of-distribution (OOD) detection on both node-level and graph-level tasks. Unlike previous methods designed primarily for image domains, RAGNOR directly tackles the relational challenges intrinsic to graphs: local contamination by anomalous neighbors, disparate norm scales across classes or roles, and insufficient references for boundary or low-degree nodes. By combining global Z-score normalization, median-based local aggregation, and multi-hop blending, RAGNOR effectively refines raw norm signals into robust OOD scores while incurring minimal overhead and requiring no retraining of the original GNN. Experimental evaluations on multiple benchmarks demonstrate that RAGNOR not only achieves competitive or superior detection performance compared to alternative techniques, but also provides an intuitive, modular design that can be readily integrated into existing graph pipelines.
Jiawei Gu, Ziyue Qiao, Zechao Li
NeurIPS2
2025 Revitalizing SVD for Global Covariance Pooling: Halley's Method to Overcome Over-Flattening
abstract
Global Covariance Pooling (GCP) has garnered increasing attention in visual recognition tasks, where second-order statistics frequently yield stronger representations than first-order approaches. However, two main streams of GCP---Newton--Schulz-based iSQRT-COV and exact or near-exact SVD methods---struggle at opposite ends of the training spectrum. While iSQRT-COV stabilizes early learning by avoiding large gradient explosions, it over-compresses significant eigenvalues in later stages, causing an \emph{over-flattening} phenomenon that stalls final accuracy. In contrast, SVD-based methods excel at preserving the high-eigenvalue structure essential for deep networks but suffer from sensitivity to small eigenvalue gaps early on. We propose \textbf{Halley-SVD}, a high-order iterative method that unites the smooth gradient advantages of iSQRT-COV with the late-stage fidelity of SVD. Grounded in Halley's iteration, our approach obviates explicit divisions by $(\lambda_i - \lambda_j)$ and forgoes threshold- or polynomial-based heuristics. As a result, it prevents both early gradient explosions and the excessive compression of large eigenvalues. Extensive experiments on CNNs and transformer architectures show that Halley-SVD consistently and robustly outperforms iSQRT-COV at large model scales and batch sizes, achieving higher overall accuracy without mid-training switches or custom truncations. This work provides a new solution to the long-standing dichotomy in GCP, illustrating how high-order methods can balance robustness and spectral precision to fully harness the representational power of modern deep networks.
Jiawei Gu, Ziyue Qiao, Zechao Li
NeurIPS2
2025 Fourier Clouds: Fast Bias Correction for Imbalanced Semi-Supervised Learning
abstract
Pseudo-label-based Semi-Supervised Learning (SSL) often suffers from classifier bias, particularly under class imbalance, as inaccurate pseudo-labels tend to exacerbate existing biases towards majority classes. Existing methods, such as \textit{CDMAD}\cite{cdmad}, utilize simplistic reference inputs—typically uniform or blank-colored images—to estimate and correct this bias. However, such simplistic references fundamentally ignore realistic statistical information inherent to real datasets, specifically typical color distributions, texture details, and frequency characteristics. This lack of \emph{statistical representativeness} can lead the model to inaccurately estimate its inherent bias, limiting the effectiveness of bias correction, particularly under severe class imbalance or substantial distribution mismatches between labeled and unlabeled datasets. To overcome these limitations, we introduce the \textbf{FARAD} (Fourier-Adapted Reference for Accurate Debiasing) System. This system utilizes random-phase images, constructed by preserving the amplitude spectrum of real data while randomizing the phase spectrum. This strategy ensures two critical properties: (1) \textbf{Semantic Irrelevance}, as randomizing phase removes any structural or recognizable semantic cues, and (2) \textbf{Statistical Representativeness}, as preserving the amplitude spectrum maintains realistic textures, color distributions, and frequency characteristics. Grounded theoretically in classical Fourier analysis, the FARAD System provides a robust, accurate estimation of per-class biases. Furthermore, computational efficiency is enhanced through optimized real-to-complex (R2C) batched Fast Fourier Transforms (FFTs). Comprehensive experiments demonstrate that our approach, significantly improves minority-class accuracy and overall SSL performance, particularly under challenging imbalance scenarios, compared with existing reference-based bias correction methods.
Jiawei Gu, Qingqiang Sun, Xiao Luo 0001, Ziyue Qiao
NeurIPS6
2025 Train with Perturbation, Infer after Merging: A Two-Stage Framework for Continual Learning
abstract
Continual Learning (CL) aims to enable models to continuously acquire new knowledge from a sequence of tasks with avoiding the forgetting of learned information. However, existing CL methods only rely on the parameters of the most recent task for inference, which makes them susceptible to catastrophic forgetting. Inspired by the recent success of model merging techniques, we propose Perturb-and-Merge (P\&M), a novel continual learning framework that integrates model merging into the CL paradigm to mitigate forgetting. Specifically, after training on each task, P\&M constructs a new model by forming a convex combination of the previous model and the newly trained task-specific model. Through theoretical analysis, We minimize the total loss increase across all tasks and derive a closed-form solution for the merging coefficient under mild assumptions. To further improve the performance of the merged model, we observe that the degradation introduced during merging can be alleviated by a regularization term composed of the task vector and the Hessian matrix of the loss function. Interestingly, we show that this term can be efficiently approximated using second-order symmetric finite differences, and a stochastic perturbation strategy along the task vector direction is accordingly devised which incurs no additional forward or backward passes while providing an effective approximation of the regularization term. Finally, we combine P\&M with LoRA, a parameter-efficient fine-tuning method, to reduce memory overhead. Our proposed approach achieves state-of-the-art performance on several continual learning benchmark datasets. The code is available at \url{https://github.com/qhmiao/P-M-for-Continual-Learning}.
Haomiao Qiu, Miao Zhang 0022, Ziyue Qiao, Liqiang Nie
NeurIPS3
2025 MATE: Masked optimal transport with dynamic selection for partial label graph learning
Yiyang Gu, Binqi Chen, Ziyue Qiao, Xiao Luo 0001, Junyu Luo 0002, Zhiping Xiao 0001, Wei Ju 0001, Ming Zhang 0004
Artif. Intell.4
2025 GPS: graph contrastive learning via multi-scale augmented views from adversarial pooling
Wei Ju 0001, Yiyang Gu, Zhengyang Mao, Ziyue Qiao, Yifang Qin, Xiao Luo 0001, Hui Xiong 0001, Ming Zhang 0004
Sci. China Inf. Sci.4
2025 Interdisciplinary Fairness in Imbalanced Research Proposal Topic Inference: A Hierarchical Transformer-based Method with Selective Interpolation
abstract
The objective of topic inference in research proposals aims to obtain the most suitable disciplinary division from the discipline system defined by a funding agency. The agency will subsequently find appropriate peer-review experts from their database based on this division. Automated topic inference can reduce human errors caused by manual topic filling, bridge the knowledge gap between funding agencies and project applicants, and improve system efficiency. Existing methods focus on modeling this as a hierarchical multi-label classification problem, using generative models to iteratively infer the most appropriate topic information. However, these methods overlook the gap in scale between interdisciplinary research proposals and non-interdisciplinary ones, leading to an unjust phenomenon where the automated inference system categorizes interdisciplinary proposals as non-interdisciplinary, causing unfairness during the expert assignment. How can we address this data imbalance issue under a complex discipline system and hence resolve this unfairness? In this article, we implement a topic label inference system based on a Transformer encoder–decoder architecture. Furthermore, we utilize interpolation techniques to create a series of pseudo-interdisciplinary proposals from non-interdisciplinary ones during training based on non-parametric indicators, such as cross-topic probabilities and topic occurrence probabilities. This approach aims to reduce the bias of the system during model training. Finally, we conduct extensive experiments on a real-world dataset to verify the effectiveness of the proposed method. The experimental results demonstrate that our training strategy can significantly mitigate the unfairness generated in the topic inference task. To improve the reproducibility of our research, we have released accompanying code by Dropbox. 1
Meng Xiao 0001, Min Wu 0008, Ziyue Qiao, Yanjie Fu, Zhiyuan Ning 0001, Yi Du 0010, Yuanchun Zhou
ACM Trans. Knowl. Discov. Data3
2025 Learning Generalizable Contrastive Representations for Graph Zero-Shot Learning
abstract
This paper studies the problem of graph zero-shot learning, which aims at recognizing novel classes of nodes on the graph that are never seen during training. The key to graph zero-shot learning is establishing the mathematical relationship to transfer the prior knowledge of nodes from seen classes to unseen classes. However, the problem is largely under-explored and existing methods typically focus on acquiring supervision signals from seen classes or simply establishing connections between classes based solely on a semantic description matrix, such that the learned representations lack generalizable properties to unseen classes. To address this issue, this paper proposes GraphGCR that learns generalizable contrastive representations from the perspective of uniformity and alignment. Technically, GraphGCR leverages graph diffusion to extend supervised contrastive learning, encouraging the representations of semantics from different classes to be distributed uniformly and meanwhile achieve the alignment of node features and class semantics with the assistance of graph structural information. Moreover, to effectively enhance model generalizability, we further develop a class generator to synthesize features of unseen classes by embedding propagation and interpolation, thereby enriching the diversity of classes. Theoretical analysis also shows that our proposed framework exhibits strong discriminative property, which significantly enhances graph zero-shot learning. Experimental findings reveal that our GraphGCR achieves significant performance improvements over state-of-the-art methods across various benchmark datasets.
Siyu Yi, Zhengyang Mao, Kangjie Zheng, Zhiping Xiao 0001, Ziyue Qiao, Chong Chen 0002, Xian-Sheng Hua 0001, Ming Zhang 0004, Wei Ju 0001
IEEE Trans. Multim.5
2025 PolyCF: Towards Optimal Spectral Graph Filters for Collaborative Filtering
abstract
Collaborative Filtering (CF) is a pivotal research area in recommender systems that capitalizes on collaborative similarities between users and items to provide personalized recommendations. With the remarkable achievements of node embedding-based Graph Neural Networks (GNNs), we explore the upper bounds of expressiveness inherent to embedding-based methodologies and tackle the challenges by reframing the CF task as a graph-signal processing problem. To this end, we propose PolyCF, a flexible graph signal filter that leverages polynomial graph filters to process interaction signals. PolyCF exhibits the capability to capture spectral features across multiple eigenspaces through a series of Generalized Gram filters and is able to approximate the optimal polynomial response function for recovering missing interactions. A graph optimization objective and a pairwise ranking objective are jointly used to optimize the parameters of the convolution kernel. Experiments on three widely adopted datasets demonstrate the superiority of PolyCF over the state-of-the-art CF methods.
Yifang Qin, Wei Ju 0001, Yiyang Gu, Ziyue Qiao, Zhiping Xiao 0001, Ming Zhang 0004
ACM Trans. Inf. Syst.4
2024 SpGesture: Source-Free Domain-adaptive sEMG-based Gesture Recognition with Jaccard Attentive Spiking Neural Network
abstract
Surface electromyography (sEMG) based gesture recognition offers a natural and intuitive interaction modality for wearable devices. Despite significant advancements in sEMG-based gesture recognition models, existing methods often suffer from high computational latency and increased energy consumption. Additionally, the inherent instability of sEMG signals, combined with their sensitivity to distribution shifts in real-world settings, compromises model robustness. To tackle these challenges, we propose a novel SpGesture framework based on Spiking Neural Networks, which possesses several unique merits compared with existing methods: (1) Robustness: By utilizing membrane potential as a memory list, we pioneer the introduction of Source-Free Domain Adaptation into SNN for the first time. This enables SpGesture to mitigate the accuracy degradation caused by distribution shifts. (2) High Accuracy: With a novel Spiking Jaccard Attention, SpGesture enhances the SNNs' ability to represent sEMG features, leading to a notable rise in system accuracy. To validate SpGesture's performance, we collected a new sEMG gesture dataset which has different forearm postures, where SpGesture achieved the highest accuracy among the baselines ($89.26\%$). Moreover, the actual deployment on the CPU demonstrated a latency below 100ms, well within real-time requirements. This impressive performance showcases SpGesture's potential to enhance the applicability of sEMG in real-world scenarios. The code is available at https://github.com/guoweiyu/SpGesture/.
Weiyu Guo, Ying Sun 0006, Yijie Xu, Ziyue Qiao, Yongkui Yang, Hui Xiong 0001
NeurIPS4
2024 KFCC: A differentiation-aware and keyword-guided fine-grain code comment generation model
abstract
An efficient and accurate understanding of the intent of code is an indispensable skill in computer technology, especially in collaborative engineering and experimental reproduction. AI-assisted automated code comment generator, with the goal of generating programmer-readable explanations, has been an emerging hot topic for software project comprehension. Despite promising performances, three critical issues emerged: 1) The summary comment is limited in understanding the fine-grain details of the code. 2) key-word level guidance in the model should be included for better comments generation. 3) performance of the generative model may be dampened by noises in the manual annotation. In response, we propose a novel fine-grain comment generation, a scenario of generating the statement-level comment with the assistance of method-level comment. We also propose KFCC, a differentiation-aware and keyword-guided fine-grain comment generation model. Specifically, the proposed KFCC model generates the statement-level comments by incorporating the key information extracted by the keyword extractor in a gate fusion way. To enhance the effectiveness and robustness of the proposed KFCC model, we propose a differentiation-aware enhancing encoder comprehension, letting the model distinguish significant knowledge via contrastive learning. Extensive experiments conducted on open-source projects demonstrate that the KFCC model achieves outstanding performance in six programming languages (including Ruby, Python, JavaScript, Java, etc.) on the CodeSearchNet benchmark.
Rui Zhang 0106, Ziyue Qiao, Jianjun Yu
Expert Syst. Appl.2
2024 Security Analysis of Large Language Models on API Misuse Programming Repair
abstract
Application programming interface (API) misuse refers to misconceptions or carelessness in the anticipated usage of APIs, threatening the software system’s security. Moreover, API misuses demonstrate significant concealment and are challenging to uncover. Recent advancements have explored enhanced LLMs in a variety of software engineering (SE) activities, such as code repair. Nonetheless, the security implications of using LLMs for these purposes remain underexplored, particularly concerning the issue of API misuse. In this paper, we present an empirical study to observe the bug‐fixing capabilities of LLMs in addressing API misuse related to monitoring resource management (MRM API misuse). Initially, we propose APImisRepair, a real‐world benchmark for repairing MRM API misuse, including buggy programs, corresponding fixed programs, and descriptions of API misuse. Subsequently, we assess the performance of several LLMs using the APImisRepair benchmark. Findings reveal the vulnerabilities of LLMs in repairing MRM API misuse and find several reasons, encompassing factors such as fault localization and a lack of awareness regarding API misuse. Additionally, we have insights on improving LLMs in terms of their ability to fix MRM API misuse and introduce a crafted approach, APImisAP. Experimental results demonstrate that APImisAP exhibits a certain degree of improvement in the security of LLMs.
Rui Zhang 0106, Ziyue Qiao, Yong Yu 0002
Int. J. Intell. Syst.2
2024 A Comprehensive Survey on Deep Graph Representation Learning
Wei Ju 0001, Zheng Fang 0007, Yiyang Gu, Zequn Liu, Qingqing Long, Ziyue Qiao, Yifang Qin, Jianhao Shen, Zhiping Xiao 0001, Jingyang Yuan, Yusheng Zhao, Yifan Wang 0014, Xiao Luo 0001, Ming Zhang 0004
Neural Networks6
2024 Focus on informative graphs! Semi-supervised active learning for graph-level classification
Wei Ju 0001, Zhengyang Mao, Ziyue Qiao, Yifang Qin, Siyu Yi, Zhiping Xiao 0001, Xiao Luo 0001, Yanjie Fu, Ming Zhang 0004
Pattern Recognit.3
2024 Information filtering and interpolating for semi-supervised graph domain adaptation
abstract
Graph domain adaptation, which falls under the umbrella of graph transfer learning, involves transferring knowledge from a labeled source graph to improve prediction accuracy on an unlabeled target graph, where both graphs have identical label spaces but exhibit distribution discrepancies due to temporal data shifts or distinct data collection methods. This adaptation is complicated by the challenges of graph-specific domain discrepancies and cross-graph label scarcity. This paper proposes a semi-supervised G raph domain adaptation method via I nformation F iltering and I nterpolating (GIFI). Specifically, GIFI utilizes a parameterized graph reduction module and a variational information bottleneck to adequately filter out irrelevant information from the source and target graphs to eliminate distribution discrepancy. GIFI also introduces an interpolation-enhanced pseudo-labeling strategy for cross-graph semi-supervised learning, which can mitigate model over-fitting on domain-specific features and limited labeled nodes, thus improving the model’s adaptation and discriminative capability. Experimental results on various graph domain adaptation benchmarks demonstrate GIFI’s superior performance over state-of-the-art methods. Our code is available at https://github.com/joe817/GIFI .
Ziyue Qiao, Meng Xiao 0001, Weiyu Guo, Xiao Luo 0001, Hui Xiong 0001
Pattern Recognit.1
2024 A Dual-channel Semi-supervised Learning Framework on Graphs via Knowledge Transfer and Meta-learning
abstract
This article studies the problem of semi-supervised learning on graphs, which aims to incorporate ubiquitous unlabeled knowledge (e.g., graph topology, node attributes) with few-available labeled knowledge (e.g., node class) to alleviate the scarcity issue of supervised information on node classification. While promising results are achieved, existing works for this problem usually suffer from the poor balance of generalization and fitting ability due to the heavy reliance on labels or task-agnostic unsupervised information. To address the challenge, we propose a dual-channel framework for semi-supervised learning on G raphs via K nowledge T ransfer between independent supervised and unsupervised embedding spaces, namely, GKT. Specifically, we devise a dual-channel framework including a supervised model for learning the label probability of nodes and an unsupervised model for extracting information from massive unlabeled graph data. A knowledge transfer head is proposed to bridge the gap between the generalization and fitting capability of the two models. We use the unsupervised information to reconstruct batch-graphs to smooth the label probability distribution on the graphs to improve the generalization of prediction. We also adaptively adjust the reconstructed graphs by encouraging the label-related connections to solidify the fitting ability. Since the optimization of the supervised channel with knowledge transfer contains that of the unsupervised channel as a constraint and vice versa, we then propose a meta-learning-based method to solve the bi-level optimization problem, which avoids the negative transfer and further improves the model’s performance. Finally, extensive experiments validate the effectiveness of our proposed framework by comparing state-of-the-art algorithms.
Ziyue Qiao, Pengyang Wang, Pengfei Wang 0008, Zhiyuan Ning 0001, Yanjie Fu, Yi Du 0010, Yuanchun Zhou, Jianqiang Huang 0001, Xian-Sheng Hua 0001, Hui Xiong 0001
ACM Trans. Web1
2023 Adaptive Path-Memory Network for Temporal Knowledge Graph Reasoning
abstract
Temporal knowledge graph (TKG) reasoning aims to predict the future missing facts based on historical information and has gained increasing research interest recently. Lots of works have been made to model the historical structural and temporal characteristics for the reasoning task. Most existing works model the graph structure mainly depending on entity representation. However, the magnitude of TKG entities in real-world scenarios is considerable, and an increasing number of new entities will arise as time goes on. Therefore, we propose a novel architecture modeling with relation feature of TKG, namely aDAptivE path-MemOry Network (DaeMon), which adaptively models the temporal path information between query subject and each object candidate across history time. It models the historical information without depending on entity representation. Specifically, DaeMon uses path memory to record the temporal path information derived from path aggregation unit across timeline considering the memory passing strategy between adjacent timestamps. Extensive experiments conducted on four real-world TKG datasets demonstrate that our proposed model obtains substantial performance improvement and outperforms the state-of-the-art up to 4.8% absolute in MRR.
Hao Dong 0010, Zhiyuan Ning 0001, Pengyang Wang, Ziyue Qiao, Pengfei Wang 0008, Yuanchun Zhou, Yanjie Fu
IJCAI4
2023 Semi-supervised Domain Adaptation in Graph Transfer Learning
abstract
As a specific case of graph transfer learning, unsupervised domain adaptation on graphs aims for knowledge transfer from label-rich source graphs to unlabeled target graphs. However, graphs with topology and attributes usually have considerable cross-domain disparity and there are numerous real-world scenarios where merely a subset of nodes are labeled in the source graph. This imposes critical challenges on graph transfer learning due to serious domain shifts and label scarcity. To address these challenges, we propose a method named Semi-supervised Graph Domain Adaptation (SGDA). To deal with the domain shift, we add adaptive shift parameters to each of the source nodes, which are trained in an adversarial manner to align the cross-domain distributions of node embedding. Thus, the node classifier trained on labeled source nodes can be transferred to the target nodes. Moreover, to address the label scarcity, we propose pseudo-labeling on unlabeled nodes, which improves classification on the target graph via measuring the posterior influence of nodes based on their relative position to the class centroids. Finally, extensive experiments on a range of publicly accessible datasets validate the effectiveness of our proposed SGDA in different experimental settings.
Ziyue Qiao, Xiao Luo 0001, Meng Xiao 0001, Hao Dong 0010, Yuanchun Zhou, Hui Xiong 0001
IJCAI1
2023 Traceable Automatic Feature Transformation via Cascading Actor-Critic Agents
abstract
Feature transformation for AI is an essential task to boost the effectiveness and interpretability of machine learning (ML). Feature transformation aims to transform original data to identify an optimal feature space that enhances the performances of a downstream ML model. Existing studies either combines preprocessing, feature selection, and generation skills to empirically transform data, or automate feature transformation by machine intelligence, such as reinforcement learning. However, existing studies suffer from: 1) high-dimensional non-discriminative feature space; 2) inability to represent complex situational states; 3) inefficiency in integrating local and global feature information. To fill the research gap, we propose a novel group-wise cascading actor-critic perspective to develop the AI construct of automated feature transformation. Specifically, we formulate the feature transformation task as an iterative, nested process of feature generation and selection, where feature generation is to generate and add new features based on original features, and feature selection is to remove redundant features to control the size of feature space. Our proposed framework has three technical aims: 1) efficient generation; 2) effective policy learning; 3) accurate state perception. For an efficient generation, we develop a tailored feature clustering algorithm and accelerate generation by feature group-group crossing based generation. For effective policy learning, we propose a cascading actor-critic learning strategy to learn state-passing agents to select candidate feature groups and operations for fast feature generation. Such a strategy can effectively learn policies when the original feature size is large, along with exponentially growing feature generation action space, in which classic Q-value estimation methods fail. For accurate state perception of feature space, we develop a state comprehension method considering not only pointwise feature information but also pairwise feature-feature correlations. Finally, we present extensive experiments and case studies to illustrate 24.7% improvements in F1 scores compared with SOTAs and robustness in high-dimensional data.
Meng Xiao 0001, Dongjie Wang 0001, Min Wu 0008, Ziyue Qiao, Pengfei Wang 0008, Kunpeng Liu 0001, Yuanchun Zhou, Yanjie Fu
SDM4
2023 RPT: Toward Transferable Model on Heterogeneous Researcher Data via Pre-Training
abstract
With the growth of the academic engines, the mining and analysis acquisition of massive researcher data, such as collaborator recommendation and researcher retrieval, has become indispensable for improving the quality and intelligence of services. However, most of the existing studies for researcher data mining focus on a single task for a particular application scenario and learning a task-specific model, which is usually unable to transfer to out-of-scope tasks. In this paper, we propose a multi-task self-supervised learning-based researcher data pre-training model named RPT, which is efficient to accomplish multiple researcher data mining tasks. Specifically, we divide the researchers’ data into semantic document sets and community graph. We design the hierarchical Transformer and the local community encoder to capture information from the two categories of data, respectively. Then, we propose three self-supervised learning objectives to train the whole model. For RPT’s main task, we leverage contrastive learning to discriminate whether these captured two kinds of information belong to the same researcher. In addition, two auxiliary tasks, named hierarchical masked language model and community relation prediction for extracting semantic and community information, are integrated to improve pre-training. Finally, we also propose two transfer modes of RPT for fine-tuning in different scenarios. We conduct extensive experiments to evaluate RPT, results on three downstream tasks verify the effectiveness of pre-training for researcher data mining.
Ziyue Qiao, Yanjie Fu, Pengyang Wang, Meng Xiao 0001, Zhiyuan Ning 0001, Yi Du 0010, Yuanchun Zhou
IEEE Trans. Big Data1
2023 Hierarchical Interdisciplinary Topic Detection Model for Research Proposal Classification
abstract
The peer merit review of research proposals has been the major mechanism to decide grant awards. However, research proposals have become increasingly interdisciplinary. It has been a longstanding challenge to assign interdisciplinary proposals to appropriate reviewers so proposals are fairly evaluated. One of the critical steps in reviewer assignment is to generate accurate interdisciplinary topic labels for proposal-reviewer matching. Existing systems mainly collect topic labels manually generated by principle investigators. However, such human-reported labels can be non-accurate, incomplete, labor intensive, and time costly. What role can AI play in developing a fair and precise proposal reviewer assignment system? In this study, we collaborate with the National Science Foundation of China to address the task of automated interdisciplinary topic path detection. For this purpose, we develop a deep Hierarchical Interdisciplinary Research Proposal Classification Network (HIRPCN). Specifically, we first propose a hierarchical transformer to extract the textual semantic information of proposals. We then design an interdisciplinary graph and leverage GNNs to learn representations of each discipline in order to extract interdisciplinary knowledge. After extracting the semantic and interdisciplinary knowledge, we design a level-wise prediction component to fuse the two types of knowledge representations and detect interdisciplinary topic paths for each proposal. We conduct extensive experiments and expert evaluations on three real-world datasets to demonstrate the effectiveness of our proposed model.
Meng Xiao 0001, Ziyue Qiao, Yanjie Fu, Hao Dong 0010, Yi Du 0010, Pengyang Wang, Hui Xiong 0001, Yuanchun Zhou
IEEE Trans. Knowl. Data Eng.2
2022 Kernel-based Substructure Exploration for Next POI Recommendation
abstract
Point-of-Interest (POI) recommendation, which benefits from the proliferation of GPS-enabled devices and location-based social networks (LBSNs), plays an increasingly important role in recommender systems. It aims to provide users with the convenience to discover their interested places to visit based on previous visits and current status. Most existing methods usually merely leverage recurrent neural networks (RNNs) to explore sequential influences for recommendation. Despite the effectiveness, these methods not only neglect topological geographical influences among POIs, but also fail to model high-order sequential substructures. To tackle the above issues, we propose a Kernel-Based Graph Neural Network (KBGNN) for next POI recommendation, which combines the characteristics of both geographical and sequential influences in a collaborative way. KBGNN consists of a geographical module and a sequential module. On the one hand, we construct a geographical graph and leverage a message passing neural network to capture the topological geographical influences. On the other hand, we explore high-order sequential substructures in the user-aware sequential graph using a graph kernel neural network to capture user preferences. Finally, a consistency learning framework is introduced to jointly incorporate geographical and sequential information extracted from two separate graphs. In this way, the two modules effectively exchange knowledge to mutually enhance each other. Extensive experiments conducted on two real-world LBSN datasets demonstrate the superior performance of our proposed method over the state-of-the-arts. Our codes are available at https://github.com/ ang6ang/KBGNN.
Wei Ju 0001, Yifang Qin, Ziyue Qiao, Xiao Luo 0001, Yifan Wang 0014, Yanjie Fu, Ming Zhang 0004
ICDM3
2022 Adaptive Harmony Learning and Optimization for Attributed Graph Clustering
abstract
Graph clustering aiming to partition nodes into several disjoint subsets is a fundamental task for graph-structured learning. Traditional graph clustering methods only consider the adjacency information. In recent years, inspired by the homophily assumption that the adjacent nodes tend to have similar features and labels, most existing graph clustering approaches leverage node attribute information to improve graph clustering performance. These works have mainly focused on node embedding learning via the various combinations of auto-encoder and graph neural networks. As for clustering learning, they introduce a self-optimizing strategy that assumes that all clusters are homogeneous. However, this assumption usually does not hold since the size and variance of different clusters can be quite different, and self-optimizing strategy is incompetent in dealing with this heterogeneous clusters. In this work, we propose a novel method named Adaptive Harmony Learning and Optimization (AHLO) for attributed graph clustering, which models the node embeddings with the mixture of von Mises-Fisher distributions on the unit hypersphere and develops an alternating learning strategy. Specifically, we take the node embeddings as the supervisory signals for the update of the mixture parameters, and the mixture distribution as the supervisory signals for the update of the node embeddings. To prevent small clusters from annexing by large clusters, we develop the regularized harmony loss to enhance the prediction on small clusters. In the mixture parameter optimization stage, we utilize EM algorithm and heuristically design a center update scheme with consideration of the posterior probability confidence and the impact of other centers. Hence, AHLO can simultaneously improve the intra-cluster compactness and inter-cluster separability. Extensive experiments on four benchmark attributed graph datasets have demonstrated the effectiveness of our proposed AHLO.
Daqing Wu, Xiangyang Guo, Xiao Luo 0001, Ziyue Qiao, Jinwen Ma
IJCNN4
2021 Context-Enhanced Entity and Relation Embedding for Knowledge Graph Completion (Student Abstract)
abstract
Most researches for knowledge graph completion learn representations of entities and relations to predict missing links in incomplete knowledge graphs. However, these methods fail to take full advantage of both the contextual information of entity and relation. Here, we extract contexts of entities and relations from the triplets which they compose. We propose a model named AggrE, which conducts efficient aggregations respectively on entity context and relation context in multi-hops, and learns context-enhanced entity and relation embeddings for knowledge graph completion. The experiment results show that AggrE is competitive to existing models.
Ziyue Qiao, Zhiyuan Ning 0001, Yi Du 0010, Yuanchun Zhou
AAAI1
2021 Expert Knowledge-Guided Length-Variant Hierarchical Label Generation for Proposal Classification
abstract
To advance the development of science and technology, research proposals are submitted to open-court competitive programs developed by government agencies (e.g., NSF). Proposal classification is one of the most important tasks to achieve effective and fair review assignments. Proposal classification aims to classify a proposal into a length-variant sequence of labels. In this paper, we formulate the proposal classification problem into a hierarchical multi-label classification task. Although there are certain prior studies, proposal classification exhibit unique features: 1) the classification result of a proposal is in a hierarchical discipline structure with different levels of granularity; 2) proposals contain multiple types of documents; 3) domain experts can empirically provide partial labels that can be leveraged to improve task performances. In this paper, we focus on developing a new deep proposal classification framework to jointly model the three features. In particular, to sequentially generate labels, we leverage previously-generated labels to predict the label of next level; to integrate partial labels from experts, we use the embedding of these empirical partial labels to initialize the state of neural networks. Our model can automatically identify the best length of label sequence to stop next label prediction. Finally, we present extensive results to demonstrate that our method can jointly model partial labels, textual information, and semantic dependencies in label sequences, and, thus, achieve advanced performances.
Meng Xiao 0001, Ziyue Qiao, Yanjie Fu, Yi Du 0010, Pengyang Wang, Yuanchun Zhou
ICDM2
2021 LightCAKE: A Lightweight Framework for Context-Aware Knowledge Graph Embedding
Zhiyuan Ning 0001, Ziyue Qiao, Hao Dong 0010, Yi Du 0010, Yuanchun Zhou
PAKDD (3)2
2020 Tree Structure-Aware Graph Representation Learning via Integrated Hierarchical Aggregation and Relational Metric Learning
abstract
While Graph Neural Network (GNN) has shown superiority in learning node representations of homogeneous graphs, leveraging GNN on heterogeneous graphs remains a challenging problem. The dominating reason is that GNN learns node representations by aggregating neighbors' information regardless of node types. Some work is proposed to alleviate such issue by exploiting relations or meta-path to sample neighbors with distinct categories, then use attention mechanism to learn different importance for different categories. However, one limitation is that the learned representations for different types of nodes should own different feature spaces, while all the above work still project node representations into one feature space. Moreover, after exploring massive heterogeneous graphs, we identify a fact that multiple nodes with the same type always connect to a node with another type, which reveals the many-to-one schema, a.k.a. the hierarchical tree structure. But all the above work cannot preserve such tree structure, since the exact multi-hop path correlation from neighbors to the target node would be erased through aggregation. Therefore, to overcome the limitations of the literature, we propose T-GNN, a tree structure-aware graph neural network model for graph representation learning. Specifically, the proposed T-GNN consists of two modules: (1) the integrated hierarchical aggregation module and (2) the relational metric learning module. The integrated hierarchical aggregation module aims to preserve the tree structure by combining GNN with gated recurrent unit to integrate the hierarchical and sequential neighborhood information on the tree structure to node representations. The relational metric learning module aims to preserve the heterogeneity by embedding each type of nodes into a type-specific space with distinct distribution based on similarity metrics. In this way, our proposed T-GNN is capable of simultaneously preserving the heterogeneity and the tree structure inherent in heterogeneous graphs. Finally, we conduct extensive experiments to show the outstanding performance of T-GNN in tasks of node clustering and classification, inductive node clustering and classification, and link prediction.
Ziyue Qiao, Pengyang Wang, Yanjie Fu, Yi Du 0010, Pengfei Wang 0008, Yuanchun Zhou
ICDM1
2019 Unsupervised Author Disambiguation using Heterogeneous Graph Convolutional Network Embedding
abstract
People share same names in real world. When a digital library user searches for an author name, he may see a mixture of publications by different authors who have the same name. Making distinctions between them is an important prerequisite to improve the quality of services and contents in digital libraries. The general task of author disambiguation is to associate publications which belong to an identical name or names with highly similar spellings to different people entities. In recent years, many researches have been conducted to solve this challenging task. However, some works rely heavily on external knowledge bases and manually annotated data. Some unsupervised learning based works require complex feature engineering. In this paper, we propose a novel and efficient author disambiguation framework which needs no labeled data. We first construct a publication heterogeneous network for each ambiguous name. Then, we use our proposed heterogeneous graph convolutional network embedding method that encodes both graph structure and node attribute information to learn publication representations. After that, we propose a graph enhanced clustering method for name disambiguation that can greatly accelerate the clustering process and need not require the number of distinct persons. Our framework can be continually retrained and applied on incremental disambiguation task when new publications are put in. Experimental results on two datasets show that our framework clearly performs better than several state-of-the-art methods for author disambiguation.
Ziyue Qiao, Yi Du 0010, Yanjie Fu, Pengfei Wang 0008, Yuanchun Zhou
IEEE BigData1