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Viktoria Schuster

dblp:300/8991 · DBLP profile ↗
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1ranked-venue papers
1as first author
1since 2021 · last 2023
0000-0002-6016-8337ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%
Artificial intelligence
1 paper
Probabilistic and Bayesian machine learning · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Machine learning › Probabilistic and Bayesian machine learning › probabilistic inference
MAP inference
0.712023
The Deep Generative Decoder: MAP estimation of representations improves modelling of single-cell RNA data · Bioinform. 2023
Bioinformatics and computational biology › single-cell analysis
single-cell representation learning
0.712023
The Deep Generative Decoder: MAP estimation of representations improves modelling of single-cell RNA data · Bioinform. 2023
Bioinformatics and computational biology › single-cell analysis
single-cell transcriptomics
0.712023
The Deep Generative Decoder: MAP estimation of representations improves modelling of single-cell RNA data · Bioinform. 2023

Methods — techniques the papers use, named apart from their topics

neural network · 1.3maximum a posteriori estimation · 1.3generative model · 1.3
YearPublicationVenuePosition
2023 The Deep Generative Decoder: MAP estimation of representations improves modelling of single-cell RNA data
abstract
MOTIVATION: Learning low-dimensional representations of single-cell transcriptomics has become instrumental to its downstream analysis. The state of the art is currently represented by neural network models, such as variational autoencoders, which use a variational approximation of the likelihood for inference. RESULTS: We here present the Deep Generative Decoder (DGD), a simple generative model that computes model parameters and representations directly via maximum a posteriori estimation. The DGD handles complex parameterized latent distributions naturally unlike variational autoencoders, which typically use a fixed Gaussian distribution, because of the complexity of adding other types. We first show its general functionality on a commonly used benchmark set, Fashion-MNIST. Secondly, we apply the model to multiple single-cell datasets. Here, the DGD learns low-dimensional, meaningful, and well-structured latent representations with sub-clustering beyond the provided labels. The advantages of this approach are its simplicity and its capability to provide representations of much smaller dimensionality than a comparable variational autoencoder. AVAILABILITY AND IMPLEMENTATION: scDGD is available as a python package at https://github.com/Center-for-Health-Data-Science/scDGD. The remaining code is made available here: https://github.com/Center-for-Health-Data-Science/dgd.
Viktoria Schuster, Anders Krogh
Bioinform.1