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Syed Mohammed Danish

dblp:377/2672 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2024
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 77% Medical and health informatics · 23%
Artificial intelligence
1 paper
Transfer learning and domain adaptation · 50% Representation and self-supervised learning · 50%

Topics — the 6 heaviest of 7, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Machine learning › Transfer learning and domain adaptation
domain-invariant representation learning
0.812024
WISER: Weak Supervision and Supervised Representation Learning to Improve Drug Response Prediction in Cancer · ICML 2024
Machine learning › Representation and self-supervised learning › representation learning
supervised representation learning
0.812024
WISER: Weak Supervision and Supervised Representation Learning to Improve Drug Response Prediction in Cancer · ICML 2024
Bioinformatics and computational biology › genomics
computational genomics
0.812024
WISER: Weak Supervision and Supervised Representation Learning to Improve Drug Response Prediction in Cancer · ICML 2024
Bioinformatics and computational biology › drug discovery
drug response prediction
0.812024
WISER: Weak Supervision and Supervised Representation Learning to Improve Drug Response Prediction in Cancer · ICML 2024
Medical and health informatics › oncology
cancer therapy
0.212024
WISER: Weak Supervision and Supervised Representation Learning to Improve Drug Response Prediction in Cancer · ICML 2024
Medical and health informatics
precision medicine
0.212024
WISER: Weak Supervision and Supervised Representation Learning to Improve Drug Response Prediction in Cancer · ICML 2024

Methods — techniques the papers use, named apart from their topics

weak supervision · 1.5supervised representation learning · 1.5
YearPublicationVenuePosition
2024 WISER: Weak Supervision and Supervised Representation Learning to Improve Drug Response Prediction in Cancer
abstract
Cancer, a leading cause of death globally, occurs due to genomic changes and manifests heterogeneously across patients. To advance research on personalized treatment strategies, the effectiveness of various drugs on cells derived from cancers (’cell lines’) is experimentally determined in laboratory settings. Nevertheless, variations in the distribution of genomic data and drug responses between cell lines and humans arise due to biological and environmental differences. Moreover, while genomic profiles of many cancer patients are readily available, the scarcity of corresponding drug response data limits the ability to train machine learning models that can predict drug response in patients effectively. Recent cancer drug response prediction methods have largely followed the paradigm of unsupervised domain-invariant representation learning followed by a downstream drug response classification step. Introducing supervision in both stages is challenging due to heterogeneous patient response to drugs and limited drug response data. This paper addresses these challenges through a novel representation learning method in the first phase and weak supervision in the second. Experimental results on real patient data demonstrate the efficacy of our method WISER (Weak supervISion and supErvised Representation learning) over state-of-the-art alternatives on predicting personalized drug response. Our implementation is available at https://github.com/kyrs/WISER
Kumar Shubham, Aishwarya Jayagopal, Syed Mohammed Danish, Prathosh A. P., Vaibhav Rajan
ICML3