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Allan Hanbury

dblp:55/6683 · DBLP profile ↗
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109ranked-venue papers
12as first author
30since 2021 · last 2026
0000-0002-7149-5843ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Databases, data management, data science and information retrieval · 59 · 2 first-author · 23 since 2021Artificial intelligence and machine learning · 44 · 8 first-author · 6 since 2021Graphics, computer vision, multimedia, augmented reality and games · 29 · 7 first-authorApplied, interdisciplinary, general and emerging computing · 10 · 6 since 2021Human-computer interaction and ubiquitous computing · 3 · 2 since 2021Software engineering, systems software and programming languages · 2 · 2 since 2021Systems, architecture and hardware · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Databases, data mining, and information retrieval
19 papers
Information retrieval · 92% Data mining · 8%
Artificial intelligence
7 papers
Information extraction and text analysis · 48% Trustworthy machine learning · 24% 3D vision · 16%
Computer graphics and multimedia
10 papers
Visualization and visual analytics · 35% Image and video processing · 28% Multimedia analysis and retrieval · 24%

Topics — the 30 heaviest of 55, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Information retrieval › document retrieval › domain-specific retrieval › legal information retrieval
patent retrieval
3.452025
6th Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2025) · SIGIR 2025
5th Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2024) · SIGIR 2024
4th Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2023) · SIGIR 2023
Information retrieval
retrieval models
2.462026
Intra-Document Cascading: Learning to Select Passages for Neural Document Ranking · SIGIR 2021
Efficiently Teaching an Effective Dense Retriever with Balanced Topic Aware Sampling · SIGIR 2021
Local Self-Attention over Long Text for Efficient Document Retrieval · SIGIR 2020
Information retrieval
evaluation
2.242026
The LLM Effect on IR Benchmarks: A Meta-Analysis of Effectiveness, Baselines, and Contamination · SIGIR 2026
VoMBaT: A Tool for Visualising Evaluation Measure Behaviour in High-Recall Search Tasks · SIGIR 2023
Visual Pool: A Tool to Visualize and Interact with the Pooling Method · SIGIR 2017
Information retrieval › retrieval models
neural retrieval
1.642026
Intra-Document Cascading: Learning to Select Passages for Neural Document Ranking · SIGIR 2021
Local Self-Attention over Long Text for Efficient Document Retrieval · SIGIR 2020
On the Effect of Low-Frequency Terms on Neural-IR Models · SIGIR 2019
Data mining
text mining
1.052025
6th Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2025) · SIGIR 2025
5th Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2024) · SIGIR 2024
4th Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2023) · SIGIR 2023
Information retrieval › retrieval models › neural retrieval
neural document ranking
0.922021
Intra-Document Cascading: Learning to Select Passages for Neural Document Ranking · SIGIR 2021
Local Self-Attention over Long Text for Efficient Document Retrieval · SIGIR 2020
Information retrieval
question answering
0.732025
6th Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2025) · SIGIR 2025
5th Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2024) · SIGIR 2024
4th Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2023) · SIGIR 2023
Information retrieval › evaluation
benchmark dataset
0.712023
CSMeD: Bridging the Dataset Gap in Automated Citation Screening for Systematic Literature Reviews · NeurIPS 2023
Data mining
dataset construction
0.712023
CSMeD: Bridging the Dataset Gap in Automated Citation Screening for Systematic Literature Reviews · NeurIPS 2023
Information retrieval › document retrieval
high-recall retrieval
0.712023
VoMBaT: A Tool for Visualising Evaluation Measure Behaviour in High-Recall Search Tasks · SIGIR 2023
Information retrieval
systematic review
0.712023
CSMeD: Bridging the Dataset Gap in Automated Citation Screening for Systematic Literature Reviews · NeurIPS 2023
Information retrieval › information filtering
technology-assisted review
0.712023
VoMBaT: A Tool for Visualising Evaluation Measure Behaviour in High-Recall Search Tasks · SIGIR 2023
Information retrieval › evaluation
test collection
0.522017
Visual Pool: A Tool to Visualize and Interact with the Pooling Method · SIGIR 2017
Splitting Water: Precision and Anti-Precision to Reduce Pool Bias · SIGIR 2015
Information retrieval › retrieval models › neural retrieval › dense retrieval
bi-encoder retrieval
0.512021
Efficiently Teaching an Effective Dense Retriever with Balanced Topic Aware Sampling · SIGIR 2021
Information retrieval › retrieval models › neural retrieval
dense retrieval
0.512021
Efficiently Teaching an Effective Dense Retriever with Balanced Topic Aware Sampling · SIGIR 2021
Machine learning › Trustworthy machine learning
crowdsourced annotation
0.412020
DEXA: Supporting Non-Expert Annotators with Dynamic Examples from Experts · SIGIR 2020
Natural language and speech › Information extraction and text analysis › data annotation
text annotation
0.412020
DEXA: Supporting Non-Expert Annotators with Dynamic Examples from Experts · SIGIR 2020
Information retrieval › document retrieval › text search
long document retrieval
0.412020
Local Self-Attention over Long Text for Efficient Document Retrieval · SIGIR 2020
Information retrieval › retrieval models › representation learning for retrieval
word embedding for retrieval
0.422017
Word Embedding Causes Topic Shifting; Exploit Global Context! · SIGIR 2017
Volatility Prediction using Financial Disclosures Sentiments with Word Embedding-based IR Models · ACL (1) 2017
Information retrieval › search engines
semantic search
0.322022
3rd Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2022) · SIGIR 2022
2nd Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2021) · SIGIR 2021
Information retrieval › evaluation › test collection › test collection construction
pooling
0.312017
Visual Pool: A Tool to Visualize and Interact with the Pooling Method · SIGIR 2017
Information retrieval › text analysis
semantic relatedness
0.312017
Word Embedding Causes Topic Shifting; Exploit Global Context! · SIGIR 2017
Information retrieval › ranking
learning to rank
0.212016
Ranking Health Web Pages with Relevance and Understandability · SIGIR 2016
Information retrieval
ranking
0.212016
Ranking Health Web Pages with Relevance and Understandability · SIGIR 2016
Information retrieval
web search
0.212016
Ranking Health Web Pages with Relevance and Understandability · SIGIR 2016
Natural language and speech › Information extraction and text analysis › sentiment analysis
financial sentiment analysis
0.212015
Detecting Risks in the Banking System by Sentiment Analysis · EMNLP 2015
Natural language and speech › Information extraction and text analysis
sentiment analysis
0.212015
Detecting Risks in the Banking System by Sentiment Analysis · EMNLP 2015
Computational finance and economics › financial risk management
financial risk assessment
0.212015
Detecting Risks in the Banking System by Sentiment Analysis · EMNLP 2015
Information retrieval › evaluation › test collection
pool bias
0.212015
Splitting Water: Precision and Anti-Precision to Reduce Pool Bias · SIGIR 2015
Computational geometry › robust geometric computation
exact computation
0.212015
An Efficient Algorithm for Calculating the Exact Hausdorff Distance · IEEE Trans. Pattern Anal. Mach. Intell. 2015

Methods — techniques the papers use, named apart from their topics

machine learning · 4.2natural language processing · 3.4large language model · 2.3classification · 1.3visualization · 1.2deep learning · 1.1meta-analysis · 1.0knowledge distillation · 1.0contamination detection · 1.0semantic sentence similarity · 0.9biosent2vec · 0.9word embeddings · 0.6sentiment analysis · 0.4feature ranking · 0.4confusion matrix · 0.4saliency-based feature selection · 0.3principal component analysis · 0.3maximum likelihood estimation · 0.3
YearPublicationVenuePosition
2026 The LLM Effect on IR Benchmarks: A Meta-Analysis of Effectiveness, Baselines, and Contamination
abstract
Benchmark collections have long enabled controlled comparison and cumulative progress in Information Retrieval (IR). However, prior meta-analyses show that reported effectiveness gains often fail to accumulate, in part due to weak or outdated baselines. Large language models (LLMs) are increasingly used in retrieval pipelines, yet their impact on established IR benchmarks has not been systematically analyzed. We analyze 179 publications reporting on the TREC Robust04 collection and the TREC Deep Learning 2020 (DL20) Passage Retrieval benchmark, using ACM Digital Library keyword search supplemented by citation-graph backtracking for Robust04. We observe what we term an LLM effect: recent systems incorporating LLM components achieve 8.8% higher nDCG@10 on DL20 than the best TREC 2020 result and 11.9% higher on Robust04 than the strongest pre-2024 result. However, evaluation practice has shifted from MAP to nDCG@10 over the same window, and our adaptation of the Data Contamination Quiz reveals 12-41% contamination across two widely-used LLM rerankers. Filtering contaminated topics shows no statistically significant effectiveness difference, but small samples and the uncertainty of adapting contamination detection to reranking prevent us from ruling out memorization as a contributing factor. We read the LLM effect as real but unverified: visible in the aggregate numbers, but not cleanly separable from metric drift or pretraining overlap.
Moritz Staudinger, Wojciech Kusa, Allan Hanbury
SIGIR3
2025 Compare: A Framework for Scientific Comparisons
abstract
Navigating the vast and rapidly increasing sea of academic publications to identify institutional synergies, benchmark research contributions and pinpoint key research contributions has become an increasingly daunting task, especially with the current exponential increase in new publications. Existing tools provide useful overviews or single-document insights, but none supports structured, qualitative comparisons across institutions or publications. To address this, we demonstrate Compare, a novel framework that tackles this challenge by enabling sophisticated long-context comparisons of scientific contributions. Compare empowers users to explore and analyze research overlaps and differences at both the institutional and publication granularity, all driven by user-defined questions and automatic retrieval over online resources. For this we leverage on Retrieval-Augmented Generation over evolving data sources to foster long context knowledge synthesis. Unlike traditional scientometric tools, Compare goes beyond quantitative indicators by providing qualitative, citation-supported comparisons.
Moritz Staudinger, Wojciech Kusa, Matteo Cancellieri, David Pride, Petr Knoth, Allan Hanbury
CIKM6
2025 TimIR: Time-Traveling Through IR History
Moritz Staudinger, Wojciech Kusa, Florina Piroi, Andreas Rauber, Allan Hanbury
ECIR (4)5
2025 6th Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2025)
abstract
Information retrieval systems for the patent domain have a long and evolving history, serving as effective tools to support patent experts in a variety of daily tasks.They facilitate patent landscape analysis, help in the drafting and evaluation tasks in the patenting process, and enable efficient information extraction to gain practical insights into new technologies and innovations.Moreover, they assist in identifying existing solutions, knowledge gaps, trends, and persistent challenges within specific technological fields, thereby informing strategic decision-making and innovation management.Advances in machine learning and natural language processing allow to further automate such tasks, e.g.paragraph retrieval, question answering (QA) or patent text generation.The exploration of semantic technologies for the intellectual property (IP) industry is still in its early stages, with significant potential yet to be unlocked.Investigating the use of artificial intelligence (AI) methods for the patent domain is therefore not only of academic interest, but also highly relevant for practitioners.Compared to other domains, high quality, semi-structured, annotated data is available in large volumes (a requirement for supervised machine learning models), making training large models easier.On the other hand, domain-specific challenges arise, such as very technical language or legal requirements for patent documents, and data from various disciplines and technological areas.With the 6th edition of this workshop we will provide a platform for researchers and industry to discuss recent developments for semantic patent retrieval and analysis employing sophisticated methods ranging from patent text mining, domain-specific information retrieval to large language models (LLMs) targeting next generation applications and use cases for the IP and related domains.
Ralf Krestel, Hidir Aras, Linda Andersson, Florina Piroi, Allan Hanbury, Dean Alderucci
SIGIR5
2024 Mission Reproducibility: An Investigation on Reproducibility Issues in Machine Learning and Information Retrieval Research
abstract
This paper analyzes the most common problems limiting reproducibility of Information Retrieval research and provides researchers with insights and guidelines to improve the reproducibility of experiments and to allow the verification of obtained results. We conducted a study on 45 reproduction reports off 17 different papers, which have been published at renowned IR conferences. We analyzed the reports qualitatively and quantitatively and looked into the different insights from different groups. Occurring problems are classified into three problem families and 13 categories and afre then analyzed with respect to their influence on the reproduction process as well as on their frequency of appearance over time and per conference. Of these 17 different papers, 14 papers were reproducible to a certain degree without significant differences to the original results, but in many cases not the whole experiment was reproducible due to missing code, information or data. Also, we look at assumptions that were made when reproducing the different papers, as some experiment workflows were incomplete and information was missing. In addition, we propose recommendations to make machine learning research more reproducible and FAIR.
Moritz Staudinger, Bettina M. J. Kern, Tomasz Miksa, Lukas Arnhold, Peter Knees, Andreas Rauber, Allan Hanbury
e-Science7
2024 5th Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2024)
abstract
Information retrieval systems for the patent domain have a long history.They can support patent experts in a variety of daily tasks: from analyzing the patent landscape to support experts in the patenting process and large-scale information extraction.Advances in machine learning and natural language processing allow to further automate tasks, such as paragraph retrieval, question answering (QA) or even patent text generation.Uncovering the potential of semantic technologies for the intellectual property (IP) industry is just getting started.Investigating the use of artificial intelligence methods for the patent domain is therefore not only of academic interest, but also highly relevant for practitioners.Compared to other domains, high quality, semi-structured, annotated data is available in large volumes (a requirement for supervised machine learning models), making training large models easier.On the other hand, domain-specific challenges arise, such as very technical language or legal requirements for patent documents.With the 5th edition of this workshop we will provide a platform for researchers and industry to learn about novel and emerging technologies for semantic patent retrieval and big analytics employing sophisticated methods ranging from patent text mining, domain-specific information retrieval to large language models targeting next generation applications and use cases for the IP and related domains.
Ralf Krestel, Hidir Aras, Linda Andersson, Florina Piroi, Allan Hanbury, Dean Alderucci
SIGIR5
2024 Learning to match patients to clinical trials using large language models
abstract
OBJECTIVE: This study investigates the use of Large Language Models (LLMs) for matching patients to clinical trials (CTs) within an information retrieval pipeline. Our objective is to enhance the process of patient-trial matching by leveraging the semantic processing capabilities of LLMs, thereby improving the effectiveness of patient recruitment for clinical trials. METHODS: We employed a multi-stage retrieval pipeline integrating various methodologies, including BM25 and Transformer-based rankers, along with LLM-based methods. Our primary datasets were the TREC Clinical Trials 2021-23 track collections. We compared LLM-based approaches, focusing on methods that leverage LLMs in query formulation, filtering, relevance ranking, and re-ranking of CTs. RESULTS: Our results indicate that LLM-based systems, particularly those involving re-ranking with a fine-tuned LLM, outperform traditional methods in terms of nDCG and Precision measures. The study demonstrates that fine-tuning LLMs enhances their ability to find eligible trials. Moreover, our LLM-based approach is competitive with state-of-the-art systems in the TREC challenges. The study shows the effectiveness of LLMs in CT matching, highlighting their potential in handling complex semantic analysis and improving patient-trial matching. However, the use of LLMs increases the computational cost and reduces efficiency. We provide a detailed analysis of effectiveness-efficiency trade-offs. CONCLUSION: This research demonstrates the promising role of LLMs in enhancing the patient-to-clinical trial matching process, offering a significant advancement in the automation of patient recruitment. Future work should explore optimising the balance between computational cost and retrieval effectiveness in practical applications.
Maciej Rybinski, Wojciech Kusa, Sarvnaz Karimi, Allan Hanbury
J. Biomed. Informatics4
2023 CRUISE-Screening: Living Literature Reviews Toolbox
abstract
Keeping up with research and finding related work is still a time-consuming task for academics. Researchers sift through thousands of studies to identify a few relevant ones. Automation techniques can help by increasing the efficiency and effectiveness of this task. To this end, we developed CRUISE-Screening, a web-based application for conducting living literature reviews -- a type of literature review that is continuously updated to reflect the latest research in a particular field. CRUISE-Screening is connected to several search engines via an API, which allows for updating the search results periodically. Moreover, it can facilitate the process of screening for relevant publications by using text classification and question answering models. CRUISE-Screening can be used both by researchers conducting literature reviews and by those working on automating the citation screening process to validate their algorithms. The application is open-source, and a demo is available under this URL: https://citation-screening.ec.tuwien.ac.at.
Wojciech Kusa, Petr Knoth, Allan Hanbury
CIKM3
2023 Search in Archival Facsimile Documents for Digital History
abstract
Recent advances in text digitization and processing have opened up many possibilities for historical archives to be processed and digitized in an efficient and automated manner. Processing steps, also involving language detection, optical character recognition (OCR), named entity recognition (NER), recognition error detection, and automated or manual correction can result in digitized archives providing both high-quality facsimile representations of original document scans and extracted text metadata close to the original text in a machine-friendly format. Exploration of digitally enhanced archives is an important step forward in the future workflow of archivists and historians alike. After analysing the requirements of these users, we propose a concept for dynamically generating retrieval-relevant facsimile image snippets. This work demonstrates a Human-in-the-Loop retrieval and research workflow based on these methods by providing a search user interface prototype geared towards intuitively exploring topics across a multilingual historical facsimile archive corpus.
David Banyasz, Sebastian Hofstätter, Allan Hanbury
e-Science3
2023 Readability Measures as Predictors of Understandability and Engagement in Searching to Learn
Yasin Ghafourian, Allan Hanbury, Petr Knoth
TPDL2
2023 Ranking for Learning: Studying Users' Perceptions of Relevance, Understandability, and Engagement
Yasin Ghafourian, Allan Hanbury, Petr Knoth
TPDL2
2023 SCI-3000: A Dataset for Figure, Table and Caption Extraction from Scientific PDFs
Filip Darmanovic, Allan Hanbury, Markus Zlabinger
ICDAR (1)2
2023 CSMeD: Bridging the Dataset Gap in Automated Citation Screening for Systematic Literature Reviews
abstract
Systematic literature reviews (SLRs) play an essential role in summarising, synthesising and validating scientific evidence. In recent years, there has been a growing interest in using machine learning techniques to automate the identification of relevant studies for SLRs. However, the lack of standardised evaluation datasets makes comparing the performance of such automated literature screening systems difficult. In this paper, we analyse the citation screening evaluation datasets, revealing that many of the available datasets are either too small, suffer from data leakage or have limited applicability to systems treating automated literature screening as a classification task, as opposed to, for example, a retrieval or question-answering task. To address these challenges, we introduce CSMED, a meta-dataset consolidating nine publicly released collections, providing unified access to 325 SLRs from the fields of medicine and computer science. CSMED serves as a comprehensive resource for training and evaluating the performance of automated citation screening models. Additionally, we introduce CSMED-FT, a new dataset designed explicitly for evaluating the full text publication screening task. To demonstrate the utility of CSMED, we conduct experiments and establish baselines on new datasets.
Wojciech Kusa, Óscar E. Mendoza, Matthias Samwald, Petr Knoth, Allan Hanbury
NeurIPS5
2023 4th Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2023)
abstract
Information retrieval systems for the patent domain have a long history. They can support patent experts in a variety of daily tasks: from analyzing the patent landscape to support experts in the patenting process and large-scale information extraction. Advances in machine learning and natural language processing allow to further automate tasks, such as paragraph retrieval or even patent text generation. Uncovering the potential of semantic technologies for the intellectual property (IP) industry is just getting started. Investigating the use of artificial intelligence methods for the patent domain is therefore not only of academic interest, but also highly relevant for practitioners. Compared to other domains, high quality, semi-structured, annotated data is available in large volumes (a requirement for supervised machine learning models), making training large models easier. On the other hand, domain-specific challenges arise, such as very technical language or legal requirements for patent documents. The focus of the 4th edition of this workshop will be on two-way communication between industry and academia from all areas of information retrieval in particular with the Asian community. We want to bring together novel research results and the latest systems and methods employed by practitioners in the field.
Ralf Krestel, Hidir Aras, Linda Andersson, Florina Piroi, Allan Hanbury, Dean Alderucci
SIGIR5
2023 VoMBaT: A Tool for Visualising Evaluation Measure Behaviour in High-Recall Search Tasks
abstract
The objective of High-Recall Information Retrieval (HRIR) is to retrieve as many relevant documents as possible for a given search topic. One approach to HRIR is Technology-Assisted Review (TAR), which uses information retrieval and machine learning techniques to aid the review of large document collections. TAR systems are commonly used in legal eDiscovery and systematic literature reviews. Successful TAR systems are able to find the majority of relevant documents using the least number of assessments. Commonly used retrospective evaluation assumes that the system achieves a specific, fixed recall level first, and then measures the precision or work saved (e.g., precision at r% recall). This approach can cause problems related to understanding the behaviour of evaluation measures in a fixed recall setting. It is also problematic when estimating time and money savings during technology-assisted reviews.
Wojciech Kusa, Aldo Lipani, Petr Knoth, Allan Hanbury
SIGIR4
2023 Effective matching of patients to clinical trials using entity extraction and neural re-ranking
abstract
INTRODUCTION: Clinical trials (CTs) often fail due to inadequate patient recruitment. Finding eligible patients involves comparing the patient's information with the CT eligibility criteria. Automated patient matching offers the promise of improving the process, yet the main difficulties of CT retrieval lie in the semantic complexity of matching unstructured patient descriptions with semi-structured, multi-field CT documents and in capturing the meaning of negation coming from the eligibility criteria. OBJECTIVES: This paper tackles the challenges of CT retrieval by presenting an approach that addresses the patient-to-trials paradigm. Our approach involves two key components in a pipeline-based model: (i) a data enrichment technique for enhancing both queries and documents during the first retrieval stage, and (ii) a novel re-ranking schema that uses a Transformer network in a setup adapted to this task by leveraging the structure of the CT documents. METHODS: We use named entity recognition and negation detection in both patient description and the eligibility section of CTs. We further classify patient descriptions and CT eligibility criteria into current, past, and family medical conditions. This extracted information is used to boost the importance of disease and drug mentions in both query and index for lexical retrieval. Furthermore, we propose a two-step training schema for the Transformer network used to re-rank the results from the lexical retrieval. The first step focuses on matching patient information with the descriptive sections of trials, while the second step aims to determine eligibility by matching patient information with the criteria section. RESULTS: Our findings indicate that the inclusion criteria section of the CT has a great influence on the relevance score in lexical models, and that the enrichment techniques for queries and documents improve the retrieval of relevant trials. The re-ranking strategy, based on our training schema, consistently enhances CT retrieval and shows improved performance by 15% in terms of precision at retrieving eligible trials. CONCLUSION: The results of our experiments suggest the benefit of making use of extracted entities. Moreover, our proposed re-ranking schema shows promising effectiveness compared to larger neural models, even with limited training data. These findings offer valuable insights for improving methods for retrieval of clinical documents.
Wojciech Kusa, Óscar E. Mendoza, Petr Knoth, Gabriella Pasi, Allan Hanbury
J. Biomed. Informatics5
2022 TripJudge: A Relevance Judgement Test Collection for TripClick Health Retrieval
abstract
Robust test collections are crucial for Information Retrieval research. Recently there is a growing interest in evaluating retrieval systems for domain-specific retrieval tasks, however these tasks often lack a reliable test collection with human-annotated relevance assessments following the Cranfield paradigm. In the medical domain, the TripClick collection was recently proposed, which contains click log data from the Trip search engine and includes two click-based test sets. However the clicks are biased to the retrieval model used, which remains unknown, and a previous study shows that the test sets have a low judgement coverage for the Top-10 results of lexical and neural retrieval models. In this paper we present the novel, relevance judgement test collection TripJudge for TripClick health retrieval. We collect relevance judgements in an annotation campaign and ensure the quality and reusability of TripJudge by a variety of ranking methods for pool creation, by multiple judgements per query-document pair and by an at least moderate inter-annotator agreement. We compare system evaluation with TripJudge and TripClick and find that that click and judgement-based evaluation can lead to substantially different system rankings.
Sophia Althammer, Sebastian Hofstätter, Suzan Verberne, Allan Hanbury
CIKM4
2022 Introducing Neural Bag of Whole-Words with ColBERTer: Contextualized Late Interactions using Enhanced Reduction
abstract
Recent progress in neural information retrieval has demonstrated large gains in quality, while often sacrificing efficiency and interpretability compared to classical approaches. We propose ColBERTer, a neural retrieval model using contextualized late interaction (ColBERT) with enhanced reduction. Along the effectiveness Pareto frontier, ColBERTer dramatically lowers ColBERT's storage requirements while simultaneously improving the interpretability of its token-matching scores. To this end, ColBERTer fuses single-vector retrieval, multi-vector refinement, and optional lexical matching components into one model. For its multi-vector component, ColBERTer reduces the number of stored vectors by learning unique whole-word representations and learning to identify and remove word representations that are not essential to effective scoring. We employ an explicit multi-task, multi-stage training to facilitate using very small vector dimensions. Results on the MS MARCO and TREC-DL collection show that ColBERTer reduces the storage footprint by up to 2.5x, while maintaining effectiveness. With just one dimension per token in its smallest setting, ColBERTer achieves index storage parity with the plaintext size, with very strong effectiveness results. Finally, we demonstrate ColBERTer's robustness on seven high-quality out-of-domain collections, yielding statistically significant gains over traditional retrieval baselines.
Sebastian Hofstätter, Omar Khattab, Sophia Althammer, Mete Sertkan, Allan Hanbury
CIKM5
2022 PARM: A Paragraph Aggregation Retrieval Model for Dense Document-to-Document Retrieval
Sophia Althammer, Sebastian Hofstätter, Mete Sertkan, Suzan Verberne, Allan Hanbury
ECIR (1)5
2022 Establishing Strong Baselines For TripClick Health Retrieval
Sebastian Hofstätter, Sophia Althammer, Mete Sertkan, Allan Hanbury
ECIR (2)4
2022 Automation of Citation Screening for Systematic Literature Reviews Using Neural Networks: A Replicability Study
Wojciech Kusa, Allan Hanbury, Petr Knoth
ECIR (1)2
2022 A Time-Optimized Content Creation Workflow for Remote Teaching
abstract
We describe our workflow to create an engaging remote learning experience for a university course, while minimizing the post-production time of the educators. We make use of ubiquitous and commonly free services and platforms, so that our workflow is inclusive for all educators and provides polished experiences for students. Our learning materials provide for each lecture: 1) a recorded video, uploaded on YouTube, with exact slide timestamp indices, which enables an enhanced navigation UI; and 2) a high-quality flow-text automated transcript of the narration with proper punctuation and capitalization, improved with a student participation workflow on GitHub. All these results could be created by hand in a time consuming and costly way. However, this would generally exceed the time available for creating course materials. Our main contribution is to automate the transformation and post-production between raw narrated slides and our published materials with a custom toolchain. Furthermore, we describe our complete workflow: from content creation to transformation and distribution. Our students gave us overwhelmingly positive feedback and especially liked our use of ubiquitous platforms. The most used feature was YouTube's chapter UI enabled through our automatically generated timestamps. The majority of students, who started using the transcripts, continued to do so. Every single transcript was corrected by students, with an average word-change of 6%. We conclude with the positive feedback that our enhanced content formats are much appreciated and utilized. Important for educators is how our low overhead production workflow was sustainable throughout a busy semester.
Sebastian Hofstätter, Sophia Althammer, Mete Sertkan, Allan Hanbury
SIGCSE (1)4
2022 3rd Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2022)
abstract
Steadily increasing numbers of patent applications per year and large amounts of available patent data necessitate highly efficient and interactive next-generation information retrieval systems in the patent domain. AI and Machine Learning (ML) methods such as Deep Learning (DL) are successfully adopted in many domains, so patent researchers and practitioners start to employ AI-based approaches as well, to support experts in the patenting process or to automate patent analysis and retrieval processes. AI-enhanced Information Retrieval systems can improve patent search and analysis but also require millions of annotated sample data for training the ML models. When working with patent data, particular challenges arise that call for adaption of existing IR and AI methods as well as development of novel approaches suited for the patent domain. The focus of the 3rd edition of this workshop will be on two-way communication between industry and academia from all areas of Information Retrieval, such as Natural Language Processing (NLP), Text and Data Mining (TDM), and Semantic Technologies (ST). We want to bring together novel research results and the latest systems and methods employed by the Intellectual Property (IP) industry.
Ralf Krestel, Hidir Aras, Linda Andersson, Florina Piroi, Allan Hanbury, Dean Alderucci
SIGIR5
2021 Cross-Domain Retrieval in the Legal and Patent Domains: A Reproducibility Study
Sophia Althammer, Sebastian Hofstätter, Allan Hanbury
ECIR (2)3
2021 Mitigating the Position Bias of Transformer Models in Passage Re-ranking
Sebastian Hofstätter, Aldo Lipani, Sophia Althammer, Markus Zlabinger, Allan Hanbury
ECIR (1)5
2021 Measuring Societal Biases from Text Corpora with Smoothed First-Order Co-occurrence
Navid Rekabsaz, Robert West 0001, James Henderson 0001, Allan Hanbury
ICWSM4
2021 Efficiently Teaching an Effective Dense Retriever with Balanced Topic Aware Sampling
abstract
A vital step towards the widespread adoption of neural retrieval models is their resource efficiency throughout the training, indexing and query workflows. The neural IR community made great advancements in training effective dual-encoder dense retrieval (DR) models recently. A dense text retrieval model uses a single vector representation per query and passage to score a match, which enables low-latency first-stage retrieval with a nearest neighbor search. Increasingly common, training approaches require enormous compute power, as they either conduct negative passage sampling out of a continuously updating refreshing index or require very large batch sizes. Instead of relying on more compute capability, we introduce an efficient topic-aware query and balanced margin sampling technique, called TAS-Balanced. We cluster queries once before training and sample queries out of a cluster per batch. We train our lightweight 6-layer DR model with a novel dual-teacher supervision that combines pairwise and in-batch negative teachers. Our method is trainable on a single consumer-grade GPU in under 48 hours. We show that our TAS-Balanced training method achieves state-of-the-art low-latency (64ms per query) results on two TREC Deep Learning Track query sets. Evaluated on [email protected], we outperform BM25 by 44%, a plainly trained DR by 19%, docT5query by 11%, and the previous best DR model by 5%. Additionally, TAS-Balanced produces the first dense retriever that outperforms every other method on recall at any cutoff on TREC-DL and allows more resource intensive re-ranking models to operate on fewer passages to improve results further.
Sebastian Hofstätter, Sheng-Chieh Lin, Jheng-Hong Yang, Jimmy Lin, Allan Hanbury
SIGIR5
2021 Intra-Document Cascading: Learning to Select Passages for Neural Document Ranking
abstract
An emerging recipe for achieving state-of-the-art effectiveness in neural document re-ranking involves utilizing large pre-trained language models - e.g., BERT - to evaluate all individual passages in the document and then aggregating the outputs by pooling or additional Transformer layers. A major drawback of this approach is high query latency due to the cost of evaluating every passage in the document with BERT. To make matters worse, this high inference cost and latency varies based on the length of the document, with longer documents requiring more time and computation. To address this challenge, we adopt an intra-document cascading strategy, which prunes passages of a candidate document using a less expensive model, called ESM, before running a scoring model that is more expensive and effective, called ETM. We found it best to train ESM (short for Efficient Student Model) via knowledge distillation from the ETM (short for Effective Teacher Model) e.g., BERT. This pruning allows us to only run the ETM model on a smaller set of passages whose size does not vary by document length. Our experiments on the MS MARCO and TREC Deep Learning Track benchmarks suggest that the proposed Intra-Document Cascaded Ranking Model (IDCM) leads to over 400% lower query latency by providing essentially the same effectiveness as the state-of-the-art BERT-based document ranking models.
Sebastian Hofstätter, Bhaskar Mitra 0001, Hamed Zamani, Nick Craswell, Allan Hanbury
SIGIR5
2021 2nd Workshop on Patent Text Mining and Semantic Technologies (PatentSemTech2021)
abstract
Information retrieval plays a crucial role in the patent domain. With the success of deep learning (DL) in other domains, patent practitioners and researchers are increasingly developing DL-based approaches to support experts in the patenting process or to automate processes for patent analysis. AI-enhanced information retrieval systems can improve patent search but also require lots of annotated data. When working with patent data, particular challenges arise that call for adaption and novel approaches of general IR and AI methods. with this workshop series we want to establish a two-way communication channel between industry and academia from relevant fields in information retrieval, such as natural language processing (NLP), text and data mining (TDM), and semantic technologies (ST), in order to explore and transfer new knowledge, methods and technologies for the benefit of industrial applications as well as support interdisciplinary research in applied sciences forthe intellectual property (IP) and neighbouring domains.
Ralf Krestel, Hidir Aras, Linda Andersson, Florina Piroi, Allan Hanbury, Dean Alderucci
SIGIR5
2021 Evaluation of Deep Learning Architectures for Complex Immunofluorescence Nuclear Image Segmentation
abstract
Separating and labeling each nuclear instance (instance-aware segmentation) is the key challenge in nuclear image segmentation. Deep Convolutional Neural Networks have been demonstrated to solve nuclear image segmentation tasks across different imaging modalities, but a systematic comparison on complex immunofluorescence images has not been performed. Deep learning based segmentation requires annotated datasets for training, but annotated fluorescence nuclear image datasets are rare and of limited size and complexity. In this work, we evaluate and compare the segmentation effectiveness of multiple deep learning architectures (U-Net, U-Net ResNet, Cellpose, Mask R-CNN, KG instance segmentation) and two conventional algorithms (Iterative h-min based watershed, Attributed relational graphs) on complex fluorescence nuclear images of various types. We propose and evaluate a novel strategy to create artificial images to extend the training set. Results show that instance-aware segmentation architectures and Cellpose outperform the U-Net architectures and conventional methods on complex images in terms of F1 scores, while the U-Net architectures achieve overall higher mean Dice scores. Training with additional artificially generated images improves recall and F1 scores for complex images, thereby leading to top F1 scores for three out of five sample preparation types. Mask R-CNN trained on artificial images achieves the overall highest F1 score on complex images of similar conditions to the training set images while Cellpose achieves the overall highest F1 score on complex images of new imaging conditions. We provide quantitative results demonstrating that images annotated by under-graduates are sufficient for training instance-aware segmentation architectures to efficiently segment complex fluorescence nuclear images.
Florian Kromp, Lukas Fischer 0001, Eva Bozsaky, Inge Ambros, Wolfgang Doerr, Klaus Beiske, Peter Ambros, Allan Hanbury, Sabine Taschner-Mandl
IEEE Trans. Medical Imaging8
2020 Country-wide Mobility Changes Observed Using Mobile Phone Data During COVID-19 Pandemic
abstract
In March 2020, the Austrian government introduced a widespread lock-down in response to the COVID-19 pandemic. Based on subjective impressions and anecdotal evidence, Austrian public and private life came to a sudden halt. Here we assess the effect of the lock-down quantitatively for all regions in Austria and present an analysis of daily changes of human mobility throughout Austria using near-real-time anonymized mobile phone data. We describe an efficient data aggregation pipeline and analyze the mobility by quantifying mobile-phone traffic at specific point of interests (POIs), analyzing individual trajectories and investigating the cluster structure of the origin-destination graph. We found a reduction of commuters at Viennese metro stations of over 80% and the number of devices with a radius of gyration of less than 500 m almost doubled. The results of studying crowd-movement behavior highlight considerable changes in the structure of mobility networks, revealed by a higher modularity and an increase from 12 to 20 detected communities. We demonstrate the relevance of mobility data for epidemiological studies by showing a significant correlation of the outflow from the town of Ischgl (an early COVID-19 hotspot) and the reported COVID-19 cases with an 8-day time lag. This research indicates that mobile phone usage data permits the moment-by-moment quantification of mobility behavior for a whole country. We emphasize the need to improve the availability of such data in anonymized form to empower rapid response to combat COVID-19 and future pandemics.
Georg Heiler, Tobias Reisch, Jan Hurt, Mohammad Forghani, Aida Omani, Allan Hanbury, Farid Karimipour
IEEE BigData6
2020 Learning to Re-Rank with Contextualized Stopwords
abstract
The use of stopwords has been thoroughly studied in traditional Information Retrieval systems, but remains unexplored in the context of neural models. Neural re-ranking models take the full text of both the query and document into account. Naturally, removing tokens that do not carry relevance information provides us with an opportunity to improve the effectiveness by reducing noise and lower document representation caching-storage requirements. In this work we propose a novel contextualized stopword detection mechanism for neural re-ranking models. This mechanism consists of training a sparse vector in order to filter out document tokens from the ranking decision. This vector is learned end-to-end based on the contextualized document representations, allowing the model to filter terms on a per occurrence basis. This leads to a more explainable model, as it reduces noise. We integrate our component into the state-of-the-art interaction-based TK neural re-ranking model. Our experiments on the MS MARCO passage collection and queries from the TREC 2019 Deep Learning Track show that filtering out traditional stopwords prior to the neural model reduces its effectiveness, while learning to filter out contextualized representations improves it.
Sebastian Hofstätter, Aldo Lipani, Markus Zlabinger, Allan Hanbury
CIKM4
2020 Fine-Grained Relevance Annotations for Multi-Task Document Ranking and Question Answering
abstract
There are many existing retrieval and question answering datasets. However, most of them either focus on ranked list evaluation or single-candidate question answering. This divide makes it challenging to properly evaluate approaches concerned with ranking documents and providing snippets or answers for a given query. In this work, we present FiRA: a novel dataset of Fine-Grained Relevance Annotations. We extend the ranked retrieval annotations of the Deep Learning track of TREC 2019 with passage and word level graded relevance annotations for all relevant documents. We use our newly created data to study the distribution of relevance in long documents, as well as the attention of annotators to specific positions of the text. As an example, we evaluate the recently introduced TKL document ranking model. We find that although TKL exhibits state-of-the-art retrieval results for long documents, it misses many relevant passages.
Sebastian Hofstätter, Markus Zlabinger, Mete Sertkan, Michael Schröder 0005, Allan Hanbury
CIKM5
2020 Interpretable & Time-Budget-Constrained Contextualization for Re-Ranking
Sebastian Hofstätter, Markus Zlabinger, Allan Hanbury
ECAI3
2020 Neural-IR-Explorer: A Content-Focused Tool to Explore Neural Re-ranking Results
Sebastian Hofstätter, Markus Zlabinger, Allan Hanbury
ECIR (2)3
2020 DSR: A Collection for the Evaluation of Graded Disease-Symptom Relations
abstract
The effective extraction of ranked disease-symptom relationships is a critical component in various medical tasks, including computer-assisted medical diagnosis or the discovery of unexpected associations between diseases. While existing disease-symptom relationship extraction methods are used as the foundation in the various medical tasks, no collection is available to systematically evaluate the performance of such methods. In this paper, we introduce the D isease- S ymptom R elation Collection ( dsr -collection), created by five physicians as expert annotators. We provide graded symptom judgments for diseases by differentiating between relevant symptoms and primary symptoms . Further, we provide several strong baselines, based on the methods used in previous studies. The first method is based on word embeddings, and the second on co-occurrences of MeSH-keywords of medical articles. For the co-occurrence method, we propose an adaption in which not only keywords are considered, but also the full text of medical articles. The evaluation on the dsr -collection shows the effectiveness of the proposed adaption in terms of nDCG, precision, and recall.
Markus Zlabinger, Sebastian Hofstätter, Navid Rekabsaz, Allan Hanbury
ECIR (2)4
2020 Local Self-Attention over Long Text for Efficient Document Retrieval
abstract
Neural networks, particularly Transformer-based architectures, have achieved significant performance improvements on several retrieval benchmarks. When the items being retrieved are documents, the time and memory cost of employing Transformers over a full sequence of document terms can be prohibitive. A popular strategy involves considering only the first n terms of the document. This can, however, result in a biased system that under retrieves longer documents. In this work, we propose a local self-attention which considers a moving window over the document terms and for each term attends only to other terms in the same window. This local attention incurs a fraction of the compute and memory cost of attention over the whole document. The windowed approach also leads to more compact packing of padded documents in minibatches resulting in additional savings. We also employ a learned saturation function and a two-staged pooling strategy to identify relevant regions of the document. The Transformer-Kernel pooling model with these changes can efficiently elicit relevance information from documents with thousands of tokens. We benchmark our proposed modifications on the document ranking task from the TREC 2019 Deep Learning track and observe significant improvements in retrieval quality as well as increased retrieval of longer documents at moderate increase in compute and memory costs.
Sebastian Hofstätter, Hamed Zamani, Bhaskar Mitra 0001, Nick Craswell, Allan Hanbury
SIGIR5
2020 DEXA: Supporting Non-Expert Annotators with Dynamic Examples from Experts
abstract
The success of crowdsourcing based annotation of text corpora depends on ensuring that crowdworkers are sufficiently well-trained to perform the annotation task accurately. To that end, a frequent approach to train annotators is to provide instructions and a few example cases that demonstrate how the task should be performed (referred to as the CONTROL approach). These globally defined "task-level examples", however, (i) often only cover the common cases that are encountered during an annotation task; and (ii) require effort from crowdworkers during the annotation process to find the most relevant example for the currently annotated sample. To overcome these limitations, we propose to support workers in addition to task-level examples, also with "task-instance level" examples that are semantically similar to the currently annotated data sample (referred to as Dynamic Examples for Annotation, DEXA). Such dynamic examples can be retrieved from collections previously labeled by experts, which are usually available as gold standard dataset. We evaluate DEXA on a complex task of annotating participants, interventions, and outcomes (known as PIO) in sentences of medical studies. The dynamic examples are retrieved using BioSent2Vec, an unsupervised semantic sentence similarity method specific to the biomedical domain. Results show that (i) workers of the DEXA approach reach on average much higher agreements (Cohen's Kappa) to experts than workers of the the CONTROL approach (avg. of 0.68 to experts in DEXA vs. 0.40 in CONTROL); (ii) already three per majority voting aggregated annotations of the DEXA approach reach substantial agreements to experts of 0.78/0.75/0.69 for P/I/O (in CONTROL 0.73/0.58/0.46). Finally, (iii) we acquire explicit feedback from workers and show that in the majority of cases (avg. 72%) workers find the dynamic examples useful.
Markus Zlabinger, Marta Sabou, Sebastian Hofstätter, Mete Sertkan, Allan Hanbury
SIGIR5
2020 BIAS: Transparent reporting of biomedical image analysis challenges
abstract
The number of biomedical image analysis challenges organized per year is steadily increasing. These international competitions have the purpose of benchmarking algorithms on common data sets, typically to identify the best method for a given problem. Recent research, however, revealed that common practice related to challenge reporting does not allow for adequate interpretation and reproducibility of results. To address the discrepancy between the impact of challenges and the quality (control), the Biomedical Image Analysis ChallengeS (BIAS) initiative developed a set of recommendations for the reporting of challenges. The BIAS statement aims to improve the transparency of the reporting of a biomedical image analysis challenge regardless of field of application, image modality or task category assessed. This article describes how the BIAS statement was developed and presents a checklist which authors of biomedical image analysis challenges are encouraged to include in their submission when giving a paper on a challenge into review. The purpose of the checklist is to standardize and facilitate the review process and raise interpretability and reproducibility of challenge results by making relevant information explicit.
Lena Maier-Hein, Annika Reinke, Michal Kozubek 0001, Anne L. Martel, Tal Arbel, Matthias Eisenmann, Allan Hanbury, Pierre Jannin, Henning Müller, Sinan Onogur, Julio Saez-Rodriguez, Bram van Ginneken, Annette Kopp-Schneider, Bennett A. Landman
Medical Image Anal.7
2019 Comparing Implementation Variants Of Distributed Spatial Join on Spark
abstract
As an increasing number of sensor devices (Internet of Things) is used, more and more spatio-temporal data becomes available. Being able to process and analyze large quantities of such datasets is therefore critical. Spatial joins in classical geo-information systems do not scale well. Nevertheless, distributed implementations are promising to solve this. Various implementation variants for distributed spatial joins are documented in literature, with some being only suitable for specific use cases. We compared broadcast and multiple variants of a distributed spatially partitioned join. We anticipate that this comparison will give guidance to when to use which implementation strategy.
Georg Heiler, Allan Hanbury
IEEE BigData2
2019 Enriching Word Embeddings for Patent Retrieval with Global Context
Sebastian Hofstätter, Navid Rekabsaz, Mihai Lupu, Carsten Eickhoff, Allan Hanbury
ECIR (1)5
2019 On the Effect of Low-Frequency Terms on Neural-IR Models
abstract
Low-frequency terms are a recurring challenge for information retrieval models, especially neural IR frameworks struggle with adequately capturing infrequently observed words. While these terms are often removed from neural models - mainly as a concession to efficiency demands - they traditionally play an important role in the performance of IR models. In this paper, we analyze the effects of low-frequency terms on the performance and robustness of neural IR models. We conduct controlled experiments on three recent neural IR models, trained on a large-scale passage retrieval collection. We evaluate the neural IR models with various vocabulary sizes for their respective word embeddings, considering different levels of constraints on the available GPU memory. We observe that despite the significant benefits of using larger vocabularies, the performance gap between the vocabularies can be, to a great extent, mitigated by extensive tuning of a related parameter: the number of documents to re-rank. We further investigate the use of subword-token embedding models, and in particular FastText, for neural IR models. Our experiments show that using FastText brings slight improvements to the overall performance of the neural IR models in comparison to models trained on the full vocabulary, while the improvement becomes much more pronounced for queries containing low-frequency terms.
Sebastian Hofstätter, Navid Rekabsaz, Carsten Eickhoff, Allan Hanbury
SIGIR4
2019 An in-depth evaluation framework for spatio-temporal features
Julian Stöttinger, Naeem Bhatti, Allan Hanbury
Multim. Tools Appl.3
2018 MM: A new Framework for Multidimensional Evaluation of Search Engines
abstract
In this paper, we proposed a framework to evaluate information retrieval systems in presence of multidimensional relevance. This is an important problem in tasks such as consumer health search, where the understandability and trustworthiness of information greatly influence people's decisions based on the search engine results, but common topicality-only evaluation measures ignore these aspects. We used synthetic and real data to compare our proposed framework, named MM, to the understandability-biased information evaluation (UBIRE), an existing framework used in the context of consumer health search. We showed how the proposed approach diverges from the UBIRE framework, and how MM can be used to better understand the trade-offs between topical relevance and the other relevance dimensions.
João R. M. Palotti, Guido Zuccon, Allan Hanbury
CIKM3
2018 Medical Entity Corpus with PICO elements and Sentiment Analysis
Markus Zlabinger, Linda Andersson, Allan Hanbury, Michael Andersson, Vanessa Quasnik, Jon Brassey
LREC3
2018 A systematic approach to normalization in probabilistic models
abstract
Every information retrieval (IR) model embeds in its scoring function a form of term frequency (TF) quantification. The contribution of the term frequency is determined by the properties of the function of the chosen TF quantification, and by its TF normalization. The first defines how independent the occurrences of multiple terms are, while the second acts on mitigating the a priori probability of having a high term frequency in a document (estimation usually based on the document length). New test collections, coming from different domains (e.g. medical, legal), give evidence that not only document length, but in addition, verboseness of documents should be explicitly considered. Therefore we propose and investigate a systematic combination of document verboseness and length. To theoretically justify the combination, we show the duality between document verboseness and length. In addition, we investigate the duality between verboseness and other components of IR models. We test these new TF normalizations on four suitable test collections. We do this on a well defined spectrum of TF quantifications. Finally, based on the theoretical and experimental observations, we show how the two components of this new normalization, document verboseness and length, interact with each other. Our experiments demonstrate that the new models never underperform existing models, while sometimes introducing statistically significantly better results, at no additional computational cost.
Aldo Lipani, Thomas Roelleke, Mihai Lupu, Allan Hanbury
Inf. Retr. J.4
2018 Contextual local primitives for binary patent image retrieval
Naeem Bhatti, Allan Hanbury, Julian Stöttinger
Multim. Tools Appl.2
2017 Volatility Prediction using Financial Disclosures Sentiments with Word Embedding-based IR Models
abstract
Navid Rekabsaz, Mihai Lupu, Artem Baklanov, Alexander Dür, Linda Andersson, Allan Hanbury. Proceedings of the 55th Annual Meeting of the Association for Computational Linguistics (Volume 1: Long Papers). 2017.
Navid Rekabsaz, Mihai Lupu, Artem Baklanov, Alexander Dür, Linda Andersson, Allan Hanbury
ACL (1)6
2017 Does Online Evaluation Correspond to Offline Evaluation in Query Auto Completion?
Alexandros Bampoulidis, João R. M. Palotti, Mihai Lupu, Jon Brassey, Allan Hanbury
ECIR5
2017 Fixed-Cost Pooling Strategies Based on IR Evaluation Measures
Aldo Lipani, João R. M. Palotti, Mihai Lupu, Florina Piroi, Guido Zuccon, Allan Hanbury
ECIR6
2017 Exploration of a Threshold for Similarity Based on Uncertainty in Word Embedding
Navid Rekabsaz, Mihai Lupu, Allan Hanbury
ECIR3
2017 Message ranking in a factory setting using context and user preference
abstract
In an industrial production setting, operators, administrators, and managing staff usually receive messages (human or machine generated) in a shared electronic message pipeline. The larger the factory and/or the number of staff, the longer the message queue and communication drawbacks follow. This paper proposes a framework that ranks messages in a communication pipeline individually, for each user, based on contexts and user preferences. The method combines a flat set of rules and an optional learning mechanism that enables tuning these rules using reference data when available. Our method does not encounter the cold start problem, systems based on this framework provide acceptable rankings immediately, which is useful in cases where no ground truth is provided. The framework presented here ensures high scalability, new rules can be easily plugged into the system without affecting the general architecture, as well as high adaptability, where ranking parameters can be modified by administrators.
Abdel Aziz Taha, Florina Piroi, Allan Hanbury, Thomas Troppe, Thomas Mutzl, Haroun Shehata
ETFA3
2017 Visual Pool: A Tool to Visualize and Interact with the Pooling Method
abstract
Every year more than 25 test collections are built among the main Information Retrieval (IR) evaluation campaigns. They are extremely important in IR because they become the evaluation praxis for the forthcoming years. Test collections are built mostly using the pooling method. The main advantage of this method is that it drastically reduces the number of documents to be judged. It does so at the cost of introducing biases, which are sometimes aggravated by non optimal configuration. In this paper we develop a novel visualization technique for the pooling method, and integrate it in a demo application named Visual Pool. This demo application enables the user to interact with the pooling method with ease, and develops visual hints in order to analyze existing test collections, and build better ones.
Aldo Lipani, Mihai Lupu, Allan Hanbury
SIGIR3
2017 Word Embedding Causes Topic Shifting; Exploit Global Context!
abstract
Exploitation of term relatedness provided by word embedding has gained considerable attention in recent IR literature. However, an emerging question is whether this sort of relatedness fits to the needs of IR with respect to retrieval effectiveness. While we observe a high potential of word embedding as a resource for related terms, the incidence of several cases of topic shifting deteriorates the final performance of the applied retrieval models. To address this issue, we revisit the use of global context (i.e. the term co-occurrence in documents) to measure the term relatedness. We hypothesize that in order to avoid topic shifting among the terms with high word embedding similarity, they should often share similar global contexts as well. We therefore study the effectiveness of post filtering of related terms by various global context relatedness measures. Experimental results show significant improvements in two out of three test collections, and support our initial hypothesis regarding the importance of considering global context in retrieval.
Navid Rekabsaz, Mihai Lupu, Allan Hanbury, Hamed Zamani
SIGIR3
2016 When is the Time Ripe for Natural Language Processing for Patent Passage Retrieval?
abstract
Patent text is a mixture of legal terms and domain specific terms. In technical English text, a multi-word unit method is often deployed as a word formation strategy in order to expand the working vocabulary, i.e. introducing a new concept without the invention of an entirely new word. In this paper we explore query generation using natural language processing technologies in order to capture domain specific concepts represented as multi-word units. In this paper we examine a range of query generation methods using both linguistic and statistical information. We also propose a new method to identify domain specific terms from other more general phrases. We apply a machine learning approach using domain knowledge and corpus linguistic information in order to learn domain specific terms in relation to phrases' Termhood values. The experiments are conducted on the English part of the CLEF-IP 2013 test collection. The outcome of the experiments shows that the favoured method in terms of PRES and recall is when a language model is used and search terms are extracted with a part-of-speech tagger and a noun phrase chunker. With our proposed methods we improve each evaluation metric significantly compared to the existing state-of-the-art for the CLEP-IP 2013 test collection: for [email protected] by 26% (0.544 from 0.433), for [email protected] by 17% (0.631 from 0.540) and on document MAP by 57% (0.300 from 0.191).
Linda Andersson, Mihai Lupu, João R. M. Palotti, Allan Hanbury, Andreas Rauber
CIKM4
2016 The Solitude of Relevant Documents in the Pool
abstract
Pool bias is a well understood problem of test-collection based benchmarking in information retrieval. The pooling method itself is designed to identify all relevant documents. In practice, 'all' translates to `as many as possible given some budgetary constraints' and the problem persists, albeit mitigated. Recently, methods to address this pool bias for previously created test collections have been proposed, for the evaluation measure precision at cut-off ([email protected]). Analyzing previous methods, we make the empirical observation that the distribution of the probability of providing new relevant documents to the pool, over the runs, is log-normal (when the pooling strategy is fixed depth at cut-off). We use this observation to calculate a prior probability of providing new relevant documents, which we then use in a pool bias estimator that improves upon previous estimates of precision at cut-off. Through extensive experimental results, covering 15 test collections, we show that the proposed bias correction method is the new state of the art, providing the closest estimates yet when compared to the original pool.
Aldo Lipani, Mihai Lupu, Evangelos Kanoulas, Allan Hanbury
CIKM4
2016 Generalizing Translation Models in the Probabilistic Relevance Framework
abstract
A recurring question in information retrieval is whether term associations can be properly integrated in traditional information retrieval models while preserving their robustness and effectiveness. In this paper, we revisit a wide spectrum of existing models (Pivoted Document Normalization, BM25, BM25 Verboseness Aware, Multi-Aspect TF, and Language Modelling) by introducing a generalisation of the idea of the translation model. This generalisation is a de facto transformation of the translation models from Language Modelling to the probabilistic models. In doing so, we observe a potential limitation of these generalised translation models: they only affect the term frequency based components of all the models, ignoring changes in document and collection statistics. We correct this limitation by extending the translation models with the 15 statistics of term associations and provide extensive experimental results to demonstrate the benefit of the newly proposed methods. Additionally, we compare the translation models with query expansion methods based on the same term association resources, as well as based on Pseudo-Relevance Feedback (PRF). We observe that translation models always outperform the first, but provide complementary information with the second, such that by using PRF and our translation models together we observe results better than the current state of the art.
Navid Rekabsaz, Mihai Lupu, Allan Hanbury, Guido Zuccon
CIKM3
2016 Query Variations and their Effect on Comparing Information Retrieval Systems
abstract
We explore the implications of using query variations for evaluating information retrieval systems and how these variations should be exploited to compare system effectiveness. Current evaluation approaches consider the availability of a set of topics (information needs), and only one expression of each topic in the form of a query is used for evaluation and system comparison. While there is strong evidence that considering query variations better models the usage of retrieval systems and accounts for the important user aspect of user variability, it is unclear how to best exploit query variations for evaluating and comparing information retrieval systems.
Guido Zuccon, João R. M. Palotti, Allan Hanbury
CIKM3
2016 The Curious Incidence of Bias Corrections in the Pool
Aldo Lipani, Mihai Lupu, Allan Hanbury
ECIR3
2016 Machine learning framework incorporating expert knowledge in tissue image annotation
abstract
The annotation of cellular nuclei in images of tissue sections is a time consuming but crucial task in quantitative microscopy. We present a machine learning framework incorporating expert knowledge enabling biologists to annotate a large number of nuclear images in a reasonable time. The proposed system is designed to generate three successive levels of annotation, each presenting more details until single nuclei are annotated. Moreover, the output of each level is used to update the model of the next level, increasing the performance speed of the system. A crucial task is the separation of aggregated nuclei. This task is modeled as an Integer Linear Program (ILP), based on the output of an ensemble segmentation and solved by using a genetic algorithm. To incorporate user input at runtime, we use a modified version of an Online Random Forest (ORF). The proposed system was tested by biologists annotating images of ganglioneuroma tissue sections. Results show that the time biologists need to annotate an image is considerably reduced after the system has been trained.
Florian Kromp, Inge Ambros, Tamara Weiss, Dominik Bogen, Helena Dodig, Maria Berneder, Teresa Gerber, Sabine Taschner-Mandl, Peter Ambros, Allan Hanbury
ICPR10
2016 Standard Test Collection for English-Persian Cross-Lingual Word Sense Disambiguation
Navid Rekabsaz, Serwah Sabetghadam, Mihai Lupu, Linda Andersson, Allan Hanbury
LREC5
2016 Ranking Health Web Pages with Relevance and Understandability
abstract
We propose a method that integrates relevance and understandability to rank health web documents. We use a learning to rank approach with standard retrieval features to determine topical relevance and additional features based on readability measures and medical lexical aspects to determine understandability. Our experiments measured the effectiveness of the learning to rank approach integrating understandability on a consumer health benchmark. The findings suggest that this approach promotes documents that are at the same time topically relevant and understandable.
João R. M. Palotti, Lorraine Goeuriot, Guido Zuccon, Allan Hanbury
SIGIR4
2016 How users search and what they search for in the medical domain - Understanding laypeople and experts through query logs
João R. M. Palotti, Allan Hanbury, Henning Müller, Charles E. Kahn Jr.
Inf. Retr. J.2
2016 Cloud-Based Evaluation of Anatomical Structure Segmentation and Landmark Detection Algorithms: VISCERAL Anatomy Benchmarks
abstract
Variations in the shape and appearance of anatomical structures in medical images are often relevant radiological signs of disease. Automatic tools can help automate parts of this manual process. A cloud-based evaluation framework is presented in this paper including results of benchmarking current state-of-the-art medical imaging algorithms for anatomical structure segmentation and landmark detection: the VISCERAL Anatomy benchmarks. The algorithms are implemented in virtual machines in the cloud where participants can only access the training data and can be run privately by the benchmark administrators to objectively compare their performance in an unseen common test set. Overall, 120 computed tomography and magnetic resonance patient volumes were manually annotated to create a standard Gold Corpus containing a total of 1295 structures and 1760 landmarks. Ten participants contributed with automatic algorithms for the organ segmentation task, and three for the landmark localization task. Different algorithms obtained the best scores in the four available imaging modalities and for subsets of anatomical structures. The annotation framework, resulting data set, evaluation setup, results and performance analysis from the three VISCERAL Anatomy benchmarks are presented in this article. Both the VISCERAL data set and Silver Corpus generated with the fusion of the participant algorithms on a larger set of non-manually-annotated medical images are available to the research community.
Oscar Alfonso Jiménez del Toro, Henning Müller, Markus Krenn, Katharina Grünberg, Abdel Aziz Taha, Marianne Winterstein, Ivan Eggel, Antonio Foncubierta-Rodríguez, Orcun Goksel, András Jakab, Georgios Kontokotsios, Georg Langs, Bjoern Menze, Tomas Salas Fernandez, Roger Schaer, Anna Walleyo, Marc-André Weber, Yashin Dicente Cid, Tobias Gass, Mattias P. Heinrich, Fucang Jia, Fredrik Kahl, Razmig Kéchichian, Dominic Mai, Assaf B. Spanier, Graham Vincent, Chunliang Wang, Daniel Wyeth, Allan Hanbury
IEEE Trans. Medical Imaging29
2015 The Influence of Pre-processing on the Estimation of Readability of Web Documents
abstract
This paper investigates the effect that text pre-processing approaches have on the estimation of the readability of web pages. Readability has been highlighted as an important aspect of web search result personalisation in previous work. The most widely used text readability measures rely on surface level characteristics of text, such as the length of words and sentences. We demonstrate that different tools for extracting text from web pages lead to very different estimations of readability. This has an important implication for search engines because search result personalisation strategies that consider users reading ability may fail if incorrect text readability estimations are computed.
João R. M. Palotti, Guido Zuccon, Allan Hanbury
CIKM3
2015 Workshop Multimodal Retrieval in the Medical Domain (MRMD) 2015
Henning Müller, Oscar Alfonso Jiménez del Toro, Allan Hanbury, Georg Langs, Antonio Foncubierta-Rodríguez
ECIR3
2015 Detecting Risks in the Banking System by Sentiment Analysis
abstract
In November 2014, the European Central Bank (ECB) started to directly supervise the largest banks in the Eurozone via the Single Supervisory Mechanism (SSM).While supervisory risk assessments are usually based on quantitative data and surveys, this work explores whether sentiment analysis is capable of measuring a bank's attitude and opinions towards risk by analyzing text data.For realizing this study, a collection consisting of more than 500 CEO letters and outlook sections extracted from bank annual reports is built up.Based on these data, two distinct experiments are conducted.The evaluations find promising opportunities, but also limitations for risk sentiment analysis in banking supervision.At the level of individual banks, predictions are relatively inaccurate.In contrast, the analysis of aggregated figures revealed strong and significant correlations between uncertainty or negativity in textual disclosures and the quantitative risk indicator's future evolution.Risk sentiment analysis should therefore rather be used for macroprudential analyses than for assessments of individual banks.
Clemens Nopp, Allan Hanbury
EMNLP2
2015 DASyR(IR) - document analysis system for systematic reviews (in Information Retrieval)
abstract
Creating systematic reviews is a painstaking task undertaken especially in domains where experimental results are the primary method to knowledge creation. For the review authors, analysing documents to extract relevant data is a demanding activity. To support the creation of systematic reviews, we have created DASyR-a semi-automatic document analysis system. DASyR is our solution to annotating published papers for the purpose of ontology population. For domains where dictionaries are not existing or inadequate, DASyR relies on a semi-automatic annotation bootstrapping method based on positional Random Indexing, followed by traditional Machine Learning algorithms to extend the annotation set. We provide an example of the method application to a subdomain of Computer Science, the Information Retrieval evaluation domain. The reliance of this domain on large scale experimental studies makes it a perfect domain to test on. We show the utility of DASyR through experimental results for different parameter values for the bootstrap procedure, evaluated in terms of annotator agreement, error rate, precision and recall.
Florina Piroi, Aldo Lipani, Mihai Lupu, Allan Hanbury
ICDAR4
2015 Splitting Water: Precision and Anti-Precision to Reduce Pool Bias
abstract
For many tasks in evaluation campaigns, especially those modeling narrow domain-specific challenges, lack of participation leads to a potential pooling bias due to the scarce number of pooled runs. It is well known that the reliability of a test collection is proportional to the number of topics and relevance assessments provided for each topic, but also to same extent to the diversity in participation in the challenges. Hence, in this paper we present a new perspective in reducing the pool bias by studying the effect of merging an unpooled run with the pooled runs. We also introduce an indicator used by the bias correction method to decide whether the correction needs to be applied or not. This indicator gives strong clues about the potential of a "good" run tested on an "unfriendly" test collection (i.e. a collection where the pool was contributed to by runs very different from the one at hand). We demonstrate the correctness of our method on a set of fifteen test collections from the Text REtrieval Conference (TREC). We observe a reduction in system ranking error and absolute score difference error.
Aldo Lipani, Mihai Lupu, Allan Hanbury
SIGIR3
2015 An Efficient Algorithm for Calculating the Exact Hausdorff Distance
abstract
The Hausdorff distance (HD) between two point sets is a commonly used dissimilarity measure for comparing point sets and image segmentations. Especially when very large point sets are compared using the HD, for example when evaluating magnetic resonance volume segmentations, or when the underlying applications are based on time critical tasks, like motion detection, then the computational complexity of HD algorithms becomes an important issue. In this paper we propose a novel efficient algorithm for computing the exact Hausdorff distance. In a runtime analysis, the proposed algorithm is demonstrated to have nearly-linear complexity. Furthermore, it has efficient performance for large point set sizes as well as for large grid size; performs equally for sparse and dense point sets; and finally it is general without restrictions on the characteristics of the point set. The proposed algorithm is tested against the HD algorithm of the widely used national library of medicine insight segmentation and registration toolkit (ITK) using magnetic resonance volumes with extremely large size. The proposed algorithm outperforms the ITK HD algorithm both in speed and memory required. In an experiment using trajectories from a road network, the proposed algorithm significantly outperforms an HD algorithm based on R-Trees.
Abdel Aziz Taha, Allan Hanbury
IEEE Trans. Pattern Anal. Mach. Intell.2
2014 A Glimpse into the State and Future of (Big) Data Analytics in Austria - Results from an Online Survey
abstract
We present results from questionnaire data that were collected from leading data analytics experts in Austria. The online survey addresses very current and pressing questions in the area of (big) data analysis. Our i??ndings provide valuable insights about what top Austrian data scientists think about data analytics, what they consider as important application areas that can benei??t from big data and data processing, the challenges of the future and how soon these challenges will become important, and the potential research topics of tomorrow. We visualize results, summarize our i??ndings and suggest a possible roadmap for future decision making.
Ralf Bierig, Allan Hanbury, Martina Haas, Florina Piroi, Helmut Berger, Mihai Lupu, Michael Dittenbach
DATA2
2014 Khresmoi Professional: Multilingual, Multimodal Professional Medical Search
Liadh Kelly, Sebastian Dungs, Sascha Kriewel, Allan Hanbury, Lorraine Goeuriot, Gareth J. F. Jones, Georg Langs, Henning Müller
ECIR4
2014 A formal method for selecting evaluation metrics for image segmentation
abstract
Evaluating the quality of segmentations is an important process in image processing, especially in the medical domain. Many evaluation metrics have been used in evaluating segmentation. There exists no formal way to choose the most suitable metric(s) for a particular segmentation task and/or particular data. In this paper we propose a formal method for choosing the most suitable metrics for evaluating the quality of segmentations with respect to ground truth segmentations. The proposed method depends on measuring the bias of metrics towards/against the properties of the the segmentations being evaluated. We firstly demonstrate how metrics can have bias towards/against particular properties and then we propose a general method for ranking metrics according to their overall bias. We finally demonstrate for 3D medical image segmentations that ranking produced using metrics with low overall bias strongly correlate with manual rankings done by an expert.
Abdel Aziz Taha, Allan Hanbury, Oscar Alfonso Jiménez del Toro
ICIP2
2014 A System Framework for Concept- and Credibility-Based Multimedia Retrieval
abstract
We present a multimedia retrieval system framework that incorporates components for processing multimedia content in different modes and languages. The framework provides concept-based information retrieval facilities that applies credibility information for result re-ranking. The architecture combines both a direct user interface and a batched evaluation interface for reproducible research in multimedia IR. The demo presents a preliminary version of the system framework and shows a use case based on the ImageCLEF 2011 Wikipedia test collection.
Ralf Bierig, Cristina Serban, Alexandra Siriteanu, Mihai Lupu, Allan Hanbury
ICMR5
2014 Guest editorial: Special issue on information retrieval in the intellectual property domain
Allan Hanbury, Mihai Lupu, Noriko Kando, Barrou Diallo
Inf. Retr.1
2014 Multiple color space channel fusion for skin detection
Rehanullah Khan, Allan Hanbury, Julian Stöttinger, Farman Ali Khan, Amjad Ullah Khattak, Amjad Ali 0005
Multim. Tools Appl.2
2014 Systematic skin segmentation: merging spatial and non-spatial data
Rehanullah Khan, Allan Hanbury, Robert Sablatnig, Julian Stöttinger, Farman Ali Khan, Fakhri Alam Khan
Multim. Tools Appl.2
2014 Visual Methods for Analyzing Probabilistic Classification Data
abstract
Multi-class classifiers often compute scores for the classification samples describing probabilities to belong to different classes. In order to improve the performance of such classifiers, machine learning experts need to analyze classification results for a large number of labeled samples to find possible reasons for incorrect classification. Confusion matrices are widely used for this purpose. However, they provide no information about classification scores and features computed for the samples. We propose a set of integrated visual methods for analyzing the performance of probabilistic classifiers. Our methods provide insight into different aspects of the classification results for a large number of samples. One visualization emphasizes at which probabilities these samples were classified and how these probabilities correlate with classification error in terms of false positives and false negatives. Another view emphasizes the features of these samples and ranks them by their separation power between selected true and false classifications. We demonstrate the insight gained using our technique in a benchmarking classification dataset, and show how it enables improving classification performance by interactively defining and evaluating post-classification rules.
Bilal Alsallakh, Allan Hanbury, Helwig Hauser, Silvia Miksch, Andreas Rauber
IEEE Trans. Vis. Comput. Graph.2
2013 Exploring Patent Passage Retrieval Using Nouns Phrases
Linda Andersson, Parvaz Mahdabi, Allan Hanbury, Andreas Rauber
ECIR3
2013 Integrating IR Technologies for Professional Search - (Full-Day Workshop)
Michail Salampasis, Norbert Fuhr, Allan Hanbury, Mihai Lupu, Birger Larsen, Henrik Strindberg
ECIR3
2013 Image search in patents: a review
Naeem Bhatti, Allan Hanbury
Int. J. Document Anal. Recognit.2
2012 Robust camera self-calibration from monocular images of Manhattan worlds
abstract
We focus on the detection of orthogonal vanishing points using line segments extracted from a single view, and using these for camera self-calibration. Recent methods view this problem as a two-stage process. Vanishing points are extracted through line segment clustering and subsequently likely orthogonal candidates are selected for calibration. Unfortunately, such an approach is easily distracted by the presence of clutter. Furthermore, geometric constraints imposed by the camera and scene orthogonality are not enforced during detection, leading to inaccurate results which are often inadmissible for calibration. To overcome these limitations, we present a RANSAC-based approach using a minimal solution for estimating three orthogonal vanishing points and focal length from a set of four lines, aligned with either two or three orthogonal directions. In addition, we propose to refine the estimates using an efficient and robust Maximum Likelihood Estimator. Extensive experiments on standard datasets show that our contributions result in significant improvements over the state-of-the-art.
Horst Wildenauer, Allan Hanbury
CVPR2
2012 Medical information retrieval: an instance of domain-specific search
abstract
Due to an explosion in the amount of medical information available, search techniques are gaining importance in the medical domain. This tutorial discusses recent results on search in the medical domain, including the outcome of surveys on end user requirements, research relevant to the field, and current medical and health search applications available. Finally, the extent to which available techniques meet user requirements are discussed, and open challenges in the field are identified.
Allan Hanbury
SIGIR1
2012 Color based skin classification
Rehanullah Khan, Allan Hanbury, Julian Stöttinger, Abdul Bais
Pattern Recognit. Lett.2
2012 Sparse Color Interest Points for Image Retrieval and Object Categorization
abstract
Interest point detection is an important research area in the field of image processing and computer vision. In particular, image retrieval and object categorization heavily rely on interest point detection from which local image descriptors are computed for image matching. In general, interest points are based on luminance, and color has been largely ignored. However, the use of color increases the distinctiveness of interest points. The use of color may therefore provide selective search reducing the total number of interest points used for image matching. This paper proposes color interest points for sparse image representation. To reduce the sensitivity to varying imaging conditions, light-invariant interest points are introduced. Color statistics based on occurrence probability lead to color boosted points, which are obtained through saliency-based feature selection. Furthermore, a principal component analysis-based scale selection method is proposed, which gives a robust scale estimation per interest point. From large-scale experiments, it is shown that the proposed color interest point detector has higher repeatability than a luminance-based one. Furthermore, in the context of image retrieval, a reduced and predictable number of color features show an increase in performance compared to state-of-the-art interest points. Finally, in the context of object recognition, for the Pascal VOC 2007 challenge, our method gives comparable performance to state-of-the-art methods using only a small fraction of the features, reducing the computing time considerably.
Julian Stöttinger, Allan Hanbury, Nicu Sebe, Theo Gevers
IEEE Trans. Image Process.2
2012 Robust Color Texture Features Under Varying Illumination Conditions
abstract
Under varying illumination, both the statistical and structural contents of color texture are modified, leading to changes in the observed texture surface. We model the effect of illumination as a perturbation on an ideal color texture and show that the spectra of the ambient light have a significant impact on the observed texture patterns in the individual color channels. Motivated by studies in human color constancy, we propose a correlation-based transformation that minimizes the effect of illumination variation in color texture analysis. Experimental results are included, which validate the performance of the proposed minvariance model in the analysis of color texture.
Umasankar Kandaswamy, Donald A. Adjeroh, Stephanie Schuckers, Allan Hanbury
IEEE Trans. Syst. Man Cybern. Part B4
2011 Morphology Based Spatial Relationships between Local Primitives in Line Drawings
Naeem Bhatti, Allan Hanbury
CIARP2
2011 4th international workshop on patent information retrieval (PaIR'11)
abstract
The 4th International Workshop on Patent Information Retrieval builds on the experiences of the first three workshops, to provide its participants an exciting, scientifically challenging and interactive event, where specific issues of patent retrieval may be put into the general context of Information Retrieval and Knowledge Management, in order to explore innovative solutions to new and old problems, but also to evaluate and adapt traditional or classic approaches to new problems. This year, we observe an increase in the use of standardized test collections in the contributions received, and, at the same time, new discussion points on how to make such standardized evaluation exercises more accessible to the larger IP community.
Mihai Lupu, Allan Hanbury, Andreas Rauber
CIKM2
2010 Skin detection: A random forest approach
abstract
Skin detection is used in applications ranging from face detection, tracking body parts and hand gesture analysis, to retrieval and blocking objectionable content. For robust skin segmentation and detection, we investigate color classification based on random forest. A random forest is a statistical framework with a very high generalization accuracy and quick training times. The random forest approach is used with the IHLS color space for raw pixel based skin detection. We evaluate random forest based skin detection and compare it to Bayesian network, Multilayer Perceptron, SVM, AdaBoost, Naive Bayes and RBF network. Results on a database of 8991 images with manually annotated pixel-level ground truth show that with the IHLS color space, the random forest approach outperforms other approaches. We also show the effect of increasing the number of trees grown for random forest. With fewer trees we get faster training times and with 10 trees we get the highest F-score.
Rehanullah Khan, Allan Hanbury, Julian Stöttinger
ICIP2
2010 FeEval A Dataset for Evaluation of Spatio-temporal Local Features
abstract
The most successful approaches to video understanding and video matching use local spatio-temporal features as a sparse representation for video content. Until now, no principled evaluation of these features has been done. We present FeEval, a dataset for the evaluation of such features. For the first time, this dataset allows for a systematic measurement of the stability and the invariance of local features in videos. FeEval consists of 30 original videos from a great variety of different sources, including HDTV shows, 1080p HD movies and surveillance cameras. The videos are iteratively varied by increasing blur, noise, increasing or decreasing light, median filter, compression quality, scale and rotation leading to a total of 1710 video clips. Homography matrices are provided for geometric transformations. The surveillance videos are taken from 4 different angles in a calibrated environment. Similar to prior work on 2D images, this leads to a repeatability and matching measurement in videos for spatio-temporal features estimating the overlap of features under increasing changes in the data.
Julian Stöttinger, Sebastian Zambanini, Rehanullah Khan, Allan Hanbury
ICPR4
2010 Affective image classification using features inspired by psychology and art theory
abstract
Images can affect people on an emotional level. Since the emotions that arise in the viewer of an image are highly subjective, they are rarely indexed. However there are situations when it would be helpful if images could be retrieved based on their emotional content. We investigate and develop methods to extract and combine low-level features that represent the emotional content of an image, and use these for image emotion classification. Specifically, we exploit theoretical and empirical concepts from psychology and art theory to extract image features that are specific to the domain of artworks with emotional expression. For testing and training, we use three data sets: the International Affective Picture System (IAPS); a set of artistic photography from a photo sharing site (to investigate whether the conscious use of colors and textures displayed by the artists improves the classification); and a set of peer rated abstract paintings to investigate the influence of the features and ratings on pictures without contextual content. Improved classification results are obtained on the International Affective Picture System (IAPS), compared to state of the art work.
Jana Machajdik, Allan Hanbury
ACM Multimedia2
2010 Behavior and properties of spatio-temporal local features under visual transformations
abstract
Successful state-of-the-art video retrieval and classification applications are predominantly carried out by means of spatio-temporal features. Typically, the evaluation of these tasks is exclusively done based on their final performance but no systematic analysis of feature robustness, invariance and stability has been done yet for large scale video retrieval. In this work, we analyze the impact of visual transformation on spatio-temporal features in large scale experiments. Following the recipe of recent state of the art evaluations, we choose the best performing approaches, namely the spatio-temporal Harris3D, Hessian3D, and Cuboid detectors and the HOG/HOF, SURF3D, and HOG3D descriptors. We show that these features have different properties and behave differently under varying transformations (challenges). This helps researchers to justify the choice of features for new applications and helps to optimize the choice of input video in terms of resolution, compression, frames per second or noise suppression. We make the extracted features accessible on-line for further independent evaluation and applications.
Julian Stöttinger, Bogdan Tudor Goras, Nicu Sebe, Allan Hanbury
ACM Multimedia4
2010 Special issue on image and video retrieval evaluation
Allan Hanbury, Henning Müller, Paul D. Clough
Comput. Vis. Image Underst.1
2009 Morphological segmentation on learned boundaries
Allan Hanbury, Beatriz Marcotegui
Image Vis. Comput.1
2008 How Do Superpixels Affect Image Segmentation?
Allan Hanbury
CIARP1
2008 On segmentation evaluation metrics and region counts
abstract
Five image segmentation algorithms are evaluated: mean shift, normalised cuts, efficient graph-based segmentation, hierarchical watershed, and waterfall. The evaluation is done using three evaluation metrics: probabilistic Rand index, global consistency error, and boundary precision-recall. We examine region-based metrics as a function of the number of regions produced by an algorithm. This allows new insights into algorithms and evaluation metrics to be gained. 1.
Allan Hanbury, Julian Stöttinger
ICPR1
2008 Constructing cylindrical coordinate colour spaces
Allan Hanbury
Pattern Recognit. Lett.1
2007 Colour Adjacency Histograms for Image Matching
Allan Hanbury, Beatriz Marcotegui
CAIP1
2007 Morphological Distinguished Regions
Allan Hanbury
CIARP1
2007 Local Structure Detection with Orientation-invariant Radial Configuration
abstract
Local image descriptors have proved themselves as useful tools for many computer vision tasks such as matching points between multiple images of a scene and object recognition. Current descriptors, such as SIFT, are designed to match image features with unique local neighborhoods. However, the interest point detectors used with SIFT often fail to select perceptible local structures in the image, and the SIFT descriptor does not directly encode the local neighborhood shape. In this paper we propose a symmetry based interest point detector and radial local structure descriptor which consistently captures the majority of basic local image structures and provides a geometrical description of the structure boundaries. This approach concentrates on the extraction of shape properties in image patches, which are an intuitive way to represent local appearance for matching and classification. We explore the specificity and sensitivity of this local descriptor in the context of classification of natural patterns. The implications of the performance comparison with standard approaches like SIFT are discussed.
Lech Szumilas, Rene Donner, Georg Langs, Allan Hanbury
CVPR4
2007 Do Colour Interest Points Improve Image Retrieval?
abstract
In image retrieval scenarios, many methods use interest point detection at an early stage to find regions in which descriptors are calculated. Finding salient locations in image data is crucial for these tasks. Observing that most current methods use only the luminance information of the images, we investigate the use of colour information in interest point detection. A way to use multi-channel information in the Harris corner detector is explored and different colour spaces are evaluated. To determine the characteristic scale of an interest point, a new colour scale selection method is presented. We show that using colour information and boosting salient colours results in improved performance in retrieval tasks.
Julian Stöttinger, Allan Hanbury, Nicu Sebe, Theo Gevers
ICIP (1)2
2006 Waterfall Segmentation of Complex Scenes
Allan Hanbury, Beatriz Marcotegui
ACCV (1)1
2006 Template Patch Driven Image Segmentation
abstract
We present a method that partitions a single image into two layers, requiring that one layer has similar properties in terms of pixel colour variation to a provided template patch. First, the paper provides a new view on dening a similarity function for a pixel with its small neighbourhood to be part of the texture described by the template patch. This results in better description of pixels near the texture boundary. Second, it is shown how the Maximally Stable Extremal Regions (MSERs), originally designed for wide baseline stereo matching, can be used to locally merge pixels having the same intensity and thus reduce the dimension of the graph representing the image. The MSERs help in texture description and yield signicant reduction of memory and computation time. Finally the graph is fed into the min.cut/max.o w algorithm to cut the graph into two parts. Performance of the method is presented on some images from the Berkeley database. Finally, restrictions in using the method are discussed.
Branislav Micusík, Allan Hanbury
BMVC2
2006 Automatic Image Segmentation by Positioning a Seed
Branislav Micusík, Allan Hanbury
ECCV (2)2
2005 Supervised Texture Detection in Images
Branislav Micusík, Allan Hanbury
CAIP2
2004 The Isophotic Metric and Its Application to Feature Sensitive Morphology on Surfaces
Helmut Pottmann, Tibor Steiner, Michael Hofer, Christoph Haider, Allan Hanbury
ECCV (4)5
2002 Finding defects in texture using regularity and local orientation
Dmitry Chetverikov, Allan Hanbury
Pattern Recognit.2
2001 Mathematical Morphology in the HLS Colour Space
abstract
The HLS colour space is widely used in image analysis as it is physically intuitive. As the hue component of this space is defined on the unit circle, standard greyscale image analysis operators, specifically morphological operators, are not applicable to it. A variation of the standard morphological operators which require the choice of an origin are discussed. In addition, some lexicographical vector orders, which allow mathematical morphology to be used in the HLS space, are presented. Included in these is a new saturationweighted hue order, which takes hue and saturation into account simultaneously. 1
Allan Hanbury, Jean Paul Frédéric Serra
BMVC1
2001 Morphological operators on the unit circle
abstract
Images encoding angular information are common in image analysis. Examples include the hue band of color images, or images encoding directional texture information. Applying mathematical morphology to image data distributed on the unit circle is not immediately possible, as the unit circle is not a lattice. Three approaches to solving this problem are presented. First, difference-based operators are studied (e.g., gradient, top-hat). Second, a definition of grouped circular data is suggested, and "pseudo" morphological operators, which operate only on grouped data, are introduced. Finally, processing using pixel labeling is presented, leading to the development of a cyclic opening operator. Applications for treating the hue band of color images and for finding perturbations in wood texture are given.
Allan Hanbury, Jean Paul Frédéric Serra
IEEE Trans. Image Process.1