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Yoshiyuki Ogata

dblp:67/8091 · DBLP profile ↗
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1ranked-venue papers
1as first author
0since 2021 · last 2010
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › gene expression analysis
gene co-expression analysis		 0.112010
CoP: a database for characterizing co-expressed gene modules with biological information in plants · Bioinform. 2010
Bioinformatics and computational biology › network bioinformatics › biological network analysis
gene co-expression network analysis		 0.112010
CoP: a database for characterizing co-expressed gene modules with biological information in plants · Bioinform. 2010
Bioinformatics and computational biology › genomics
plant genomics		 0.112010
CoP: a database for characterizing co-expressed gene modules with biological information in plants · Bioinform. 2010
Bioinformatics and computational biology
transcriptomics		 0.112010
CoP: a database for characterizing co-expressed gene modules with biological information in plants · Bioinform. 2010

Methods — techniques the papers use, named apart from their topics

microarray data integration · 0.1confeito algorithm · 0.1
YearPublicationVenuePosition
2010 CoP: a database for characterizing co-expressed gene modules with biological information in plants
abstract
UNLABELLED: Using a large dataset (10 022 assays) obtained from public plant microarray databases, we developed the CoP database for associating co-expressed gene modules with biological information such as gene ontology terms and, if available, metabolic pathway names. The Confeito algorithm developed previously in our laboratory, which is suitable to calculate the interconnectivity between genes in co-expressed gene network, was applied to extract co-expressed gene modules. The database includes the gene modules for Arabidopsis thaliana (thale cress) and seven crops, Glycine max (soybean), Hordeum vulgare (barley), Oryza sativa (rice), Populus trichocarpa (poplar), Triticum aestivum (wheat), Vitis vinifera (grape) and Zea mays (maize). AVAILABILITY: The CoP database is available at: http://webs2.kazusa.or.jp/kagiana/cop0911/.
Yoshiyuki Ogata, Hideyuki Suzuki, Nozomu Sakurai, Daisuke Shibata
 Bioinform.1