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Stephen Wooding

dblp:67/872 · DBLP profile ↗
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2ranked-venue papers
2as first author
0since 2021 · last 2003
—ORCID · conflict

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2 · 2 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 100%
Computer architecture, parallel and distributed computing, and storage systems
1 paper
Distributed systems · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › population genetics › population parameter estimation
demographic inference		 0.122003
PopHist: inferring population history from the spectrum of allele frequencies · Bioinform. 2003
PRoMT: inferring demographic history from DNA sequences · Bioinform. 2000
Bioinformatics and computational biology
population genetics		 0.122003
PopHist: inferring population history from the spectrum of allele frequencies · Bioinform. 2003
PRoMT: inferring demographic history from DNA sequences · Bioinform. 2000
Distributed systems
distributed cluster computing		 0.012000
PRoMT: inferring demographic history from DNA sequences · Bioinform. 2000

Methods — techniques the papers use, named apart from their topics

parallelization · 0.1mismatch algorithm · 0.1maximum likelihood estimation · 0.0matrix coalescent · 0.0likelihood ratio test · 0.0
YearPublicationVenuePosition
2003 PopHist: inferring population history from the spectrum of allele frequencies
abstract
SUMMARY: PopHist is a computer program that uses the frequency spectrum of alleles to: (a) estimate maximum likelihood parameters describing a population's history; and (b) compare alternative hypotheses about population history using likelihood ratio tests. The program uses the matrix coalescent, a method for calculating theoretical frequency spectra that can be applied to sets of unlinked sites. AVAILABILITY: Source code and documentation are available at http://mombasa.anthro.utah.edu/wooding/PopHist
Stephen Wooding
 Bioinform.1
2000 PRoMT: inferring demographic history from DNA sequences
abstract
UNLABELLED: I describe a parallel implementation of Rogers' mismatch algorithm, a method for making inferences about demographic history from DNA sequence data. The program is distributed on clusters of workstations, providing a substantial speedup and low execution times on large numbers of nodes. AVAILABILITY: Source code and documentation are available at http://mombasa.anthro.utah.edu/wooding/ CONTACT: [email protected]
Stephen Wooding
 Bioinform.1