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Gianmaria Silvello

dblp:71/3148 · DBLP profile ↗
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60ranked-venue papers
3as first author
31since 2021 · last 2026
0000-0003-4970-4554ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Databases, data management, data science and information retrieval · 53 · 3 first-author · 26 since 2021Artificial intelligence and machine learning · 7 · 5 since 2021Applied, interdisciplinary, general and emerging computing · 3 · 3 since 2021Systems, architecture and hardware · 1Human-computer interaction and ubiquitous computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Databases, data mining, and information retrieval
13 papers
Information retrieval · 50% Knowledge graphs · 29% Query processing and optimization · 10%
Artificial intelligence
2 papers
Language models and text generation · 33% Information extraction and text analysis · 33% Probabilistic and Bayesian machine learning · 33%

Topics — the 27 heaviest of 32, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Information retrieval
evaluation
1.122025
Doctron: A Web-based Collaborative Annotation Tool for Ground Truth Creation in IR · SIGIR 2025
A Visual Analytics Approach for What-If Analysis of Information Retrieval Systems · SIGIR 2016
Information retrieval › evaluation › test collection
ground truth creation
0.912025
Doctron: A Web-based Collaborative Annotation Tool for Ground Truth Creation in IR · SIGIR 2025
Knowledge graphs › knowledge graph quality
knowledge graph accuracy evaluation
0.912025
Credible Intervals for Knowledge Graph Accuracy Estimation · Proc. ACM Manag. Data 2025
Knowledge graphs
knowledge graph quality
0.912025
Credible Intervals for Knowledge Graph Accuracy Estimation · Proc. ACM Manag. Data 2025
Information retrieval › evaluation
relevance judgment
0.912025
Doctron: A Web-based Collaborative Annotation Tool for Ground Truth Creation in IR · SIGIR 2025
Information retrieval › evaluation
test collection
0.912025
Doctron: A Web-based Collaborative Annotation Tool for Ground Truth Creation in IR · SIGIR 2025
Query processing and optimization › cardinality estimation
sampling-based estimation
0.812024
Efficient and Reliable Estimation of Knowledge Graph Accuracy · Proc. VLDB Endow. 2024
Information retrieval › ranking › multi-objective ranking
fair ranking
0.712023
Pairwise Fairness in Ranking as a Dissatisfaction Measure · WSDM 2023
Knowledge graphs
knowledge graph querying
0.712023
Searching for Reliable Facts over a Medical Knowledge Base · SIGIR 2023
Information retrieval
knowledge-enhanced representation learning
0.412020
Learning Unsupervised Knowledge-Enhanced Representations to Reduce the Semantic Gap in Information Retrieval · ACM Trans. Inf. Syst. 2020
Information retrieval › retrieval models
neural retrieval
0.412020
Learning Unsupervised Knowledge-Enhanced Representations to Reduce the Semantic Gap in Information Retrieval · ACM Trans. Inf. Syst. 2020
Information retrieval
retrieval models
0.412020
Learning Unsupervised Knowledge-Enhanced Representations to Reduce the Semantic Gap in Information Retrieval · ACM Trans. Inf. Syst. 2020
Information retrieval › multimedia analysis and retrieval
semantic gap
0.412020
Learning Unsupervised Knowledge-Enhanced Representations to Reduce the Semantic Gap in Information Retrieval · ACM Trans. Inf. Syst. 2020
Information retrieval
keyword search
0.412019
A Scalable Virtual Document-Based Keyword Search System for RDF Datasets · SIGIR 2019
Graph data management
RDF data management
0.412019
A Scalable Virtual Document-Based Keyword Search System for RDF Datasets · SIGIR 2019
Data integration and cleaning
data provenance
0.312017
Data Citation: A Computational Challenge · PODS 2017
Query processing and optimization › query rewriting
query answering using views
0.312017
Data Citation: A Computational Challenge · PODS 2017
Natural language and speech › Information extraction and text analysis › fact-checking
automated fact-checking
0.312025
Fact Verification in Knowledge Graphs Using LLMs · SIGIR 2025
Natural language and speech › Language models and text generation
retrieval-augmented generation
0.312025
Fact Verification in Knowledge Graphs Using LLMs · SIGIR 2025
Information retrieval
retrieval evaluation
0.212016
A General Linear Mixed Models Approach to Study System Component Effects · SIGIR 2016
Database system architecture and tuning
what-if analysis
0.212016
A Visual Analytics Approach for What-If Analysis of Information Retrieval Systems · SIGIR 2016
Performance modeling and evaluation
benchmarking
0.212016
A General Linear Mixed Models Approach to Study System Component Effects · SIGIR 2016
Query processing and optimization › approximate query processing
confidence interval estimation
0.212024
Efficient and Reliable Estimation of Knowledge Graph Accuracy · Proc. VLDB Endow. 2024
Information retrieval › retrieval evaluation
ranking evaluation
0.212023
Pairwise Fairness in Ranking as a Dissatisfaction Measure · WSDM 2023
Data integration and cleaning
interoperability
0.212013
A geolinguistic web application based on linked open data · SIGIR 2013
Knowledge graphs › semantic web
linked open data
0.212013
A geolinguistic web application based on linked open data · SIGIR 2013
Information retrieval › document retrieval › domain-specific retrieval
biomedical information retrieval
0.112020
Learning Unsupervised Knowledge-Enhanced Representations to Reduce the Semantic Gap in Information Retrieval · ACM Trans. Inf. Syst. 2020

Methods — techniques the papers use, named apart from their topics

retrieval-augmented generation · 1.7large language model · 1.7ensemble learning · 1.7credible intervals · 1.7bayesian statistics · 1.7adaptive sampling · 1.7autocomplete · 1.3inter-annotator agreement · 0.9wilson method · 0.8fairness measurement · 0.7faceted search · 0.7general linear mixed model · 0.2ANOVA · 0.2
YearPublicationVenuePosition
2026 From Single to Multi-agent Reasoning: Advancing GeneGPT for Genomics QA
Kimia Abedini, Farzad Shami, Gianmaria Silvello
ECIR (2)3
2026 GutBrainKB: Exploring the Gut-Brain Interaction Through a Reliable Biomedical KB
Ornella Irrera, Marco Martinelli 0003, Samuel Piron, Gianmaria Silvello
ECIR (4)4
2026 BioASQ at CLEF2026: The Fourteenth Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge
Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara, Martin Krallinger, Miguel Rodríguez-Ortega, Eduard Rodriguez-López, Natalia V. Loukachevitch, Igor Rozhkov, Elena Tutubalina, Grigorios Tsoumakas, George Giannakoulas, Dimitris Dimitriadis, Alexandra Bekiaridou, Athanasios Samaras, Vasiliki Patsiou, Giorgio Maria Di Nunzio, Nicola Ferro 0001, Stefano Marchesin 0001, Marco Martinelli 0003, Gianmaria Silvello, Georgios Paliouras
ECIR (4)20
2026 Benchmarking Large Language Models for Knowledge Graph Validation
abstract
Knowledge Graphs (KGs) store structured factual knowledge by linking entities through relationships, crucial for many applications. These applications depend on the KG's factual accuracy, so verifying facts is essential, yet challenging. Expert manual verification is ideal but impractical on a large scale. Automated methods show promise but are not ready for real-world KGs. Large Language Models (LLMs) offer potential with their semantic understanding and knowledge access, yet their suitability and effectiveness for KG fact validation remain largely unexplored. In this paper, we introduce FactCheck, a benchmark designed to evaluate LLMs for KG fact validation across three key dimensions: (1) LLMs internal knowledge; (2) external evidence via Retrieval-Augmented Generation (RAG); and (3) aggregated knowledge employing a multi-model consensus strategy. We evaluated open-source and commercial LLMs on three diverse real-world KGs. FactCheck also includes a RAG dataset with 2+ million documents tailored for KG fact validation. Additionally, we offer an interactive exploration platform for analyzing verification decisions. The experimental analyses demonstrate that while LLMs yield promising results, they are still not sufficiently stable and reliable to be used in real-world KG validation scenarios. Integrating external evidence through RAG methods yields fluctuating performance, providing inconsistent improvements over more streamlined approaches -- at higher computational costs. Similarly, strategies based on multi-model consensus do not consistently outperform individual models, underscoring the lack of a one-fits-all solution. These findings further emphasize the need for a benchmark like FactCheck to systematically evaluate and drive progress on this difficult yet crucial task.
Farzad Shami, Stefano Marchesin 0001, Gianmaria Silvello
EDBT3
2026 DOREMI: Optimizing long tail predictions in document-level relation extraction
abstract
Document-Level Relation Extraction (DocRE) presents significant challenges due to its reliance on cross-sentence context and the long-tail distribution of relation types, where many relations have scarce training examples. In this work, we introduce DOcument-level Relation Extraction optiMizing the long taIl (DOREMI), an iterative framework that enhances underrepresented relations through minimal yet targeted manual annotations. Unlike previous approaches that rely on large-scale noisy data or heuristic denoising, DOREMI actively selects the most informative examples to improve training efficiency and robustness. DOREMI can be applied to any existing DocRE model and is effective at mitigating long-tail biases, offering a scalable solution to improve generalization on rare relations.
Laura Menotti, Stefano Marchesin 0001, Gianmaria Silvello
Knowl. Based Syst.3
2026 LLMs as Stratification Signals for KG Accuracy Evaluation
Stefano Marchesin 0001, Matteo Ceccarello, Gianmaria Silvello
Proc. VLDB Endow.3
2025 Scaling Trust: Veracity-Driven Defect Detection in Entity Search
abstract
Veracity is a critical dimension of data quality that directly impacts a wide range of tasks. In entity search scenarios, Knowledge Graphs (KGs) such as DBpedia and Wikidata serve as core resources for accessing factual content. The veracity of these KGs is therefore essential for ensuring the reliability and trustworthiness of retrieved entities -- factors that directly influence user confidence in the search system. However, ensuring the truthfulness of entities remains a major challenge due to the complexities associated with the scale, development, and maintenance of KGs.
Ornella Irrera, Stefano Marchesin 0001, Gianmaria Silvello, Omar Alonso
CIKM3
2025 BioASQ at CLEF2025: The Thirteenth Edition of the Large-Scale Biomedical Semantic Indexing and Question Answering Challenge
Anastasios Nentidis, Georgios Katsimpras, Anastasia Krithara, Martin Krallinger, Miguel Rodríguez-Ortega, Natalia V. Loukachevitch, Andrey Sakhovskiy, Elena Tutubalina, Grigorios Tsoumakas, George Giannakoulas, Alexandra Bekiaridou, Athanasios Samaras, Giorgio Maria Di Nunzio, Nicola Ferro 0001, Stefano Marchesin 0001, Laura Menotti, Gianmaria Silvello, Georgios Paliouras
ECIR (5)17
2025 Heterogeneous Graph Representation for Dataset Link Prediction on Dynamic and Sparse Scholarly Graphs
Ornella Irrera, Matteo Lissandrini, Daniele Dell'Aglio, Gianmaria Silvello
TPDL4
2025 Doctron: A Web-based Collaborative Annotation Tool for Ground Truth Creation in IR
abstract
In Information Retrieval (IR), ground truth creation is a crucial yet resource-intensive task that relies on human experts to build test collections - essential for training and evaluating retrieval models. Large-scale evaluation campaigns, such as TREC and CLEF, demand significant human effort to produce reliable, high-quality annotations. To ease this process, tailored annotation tools are pivotal to supporting assessors and streamlining their workload. To this end, we introduce Doctron, a web-based, dockerized annotation tool designed to streamline ground truth creation for IR tasks. Doctron enables the annotation of both textual documents and images. It supports annotating textual passages, identifying relationships, tagging and linking entities, evaluating document relevance to a topic with graded labels, and performing object detection. It offers a collaborative environment where teams can work with defined user roles and permissions. The integration of Inter Annotator Agreement (IAA) measures helps to identify inconsistencies between annotators, thereby ensuring the reliability and high quality of the annotated ground truth data.
Ornella Irrera, Stefano Marchesin 0001, Farzad Shami, Gianmaria Silvello
SIGIR4
2025 Fact Verification in Knowledge Graphs Using LLMs
abstract
Automated fact-checking systems often struggle with trustworthiness, as they lack transparency in their reasoning processes and fail to handle relationships in data. This work presents FactCheck, a fact verification system topped by a web platform that shows how Large Language Models (LLMs) can be collectively used to verify facts within Knowledge Graphs (KGs). While the underlying verification engine implements a system that combines Retrieval Augmented Generation (RAG) with an ensemble of LLMs to validate KG facts, the platform focuses on making the results of this complex process as transparent and accessible as possible. Users can explore how different models interpret the same evidence, compare their reasoning patterns, and understand the factors that lead to the final verification result. The platform supports technical users who want to analyze the model behavior and general users who need to verify whether the facts in the dataset are correct.
Farzad Shami, Stefano Marchesin 0001, Gianmaria Silvello
SIGIR3
2025 Large Language Models and Data Quality for Knowledge Graphs
Stefano Marchesin 0001, Gianmaria Silvello, Omar Alonso
Inf. Process. Manag.2
2025 Credible Intervals for Knowledge Graph Accuracy Estimation
abstract
Knowledge Graphs (KGs) are widely used in data-driven applications and downstream tasks, such as virtual assistants, recommendation systems, and semantic search. The accuracy of KGs directly impacts the reliability of the inferred knowledge and outcomes. Therefore, assessing the accuracy of a KG is essential for ensuring the quality of facts used in these tasks. However, the large size of real-world KGs makes manual triple-by-triple annotation impractical, thereby requiring sampling strategies to provide accuracy estimates with statistical guarantees. The current state-of-the-art approaches rely on Confidence Intervals (CIs), derived from frequentist statistics. While efficient, CIs have notable limitations and can lead to interpretation fallacies. In this paper, we propose to overcome the limitations of CIs by using Credible Intervals (CrIs), which are grounded in Bayesian statistics. These intervals are more suitable for reliable post-data inference, particularly in KG accuracy evaluation. We prove that CrIs offer greater reliability and stronger guarantees than frequentist approaches in this context. Additionally, we introduce aHPD, an adaptive algorithm that is more efficient for real-world KGs and statistically robust, addressing the interpretive challenges of CIs.
Stefano Marchesin 0001, Gianmaria Silvello
Proc. ACM Manag. Data2
2025 The ESW of Wikidata: Exploratory search workflows on Knowledge Graphs
abstract
Exploratory search on Knowledge Graphs (KGs) arises when a user needs to understand and extract insights from an unfamiliar KG. In these exploratory sessions, the users issue a series of queries to identify relevant portions of the KG that can answer their questions, with each query answer informing the formulation of the next query. Despite the widespread adoption of KGs, the needs of current KG exploration use cases are not well understood. This work presents the “Exploratory Search Workflows” (ESW) collection focusing on real-world exploration sessions of an open-domain KG, Wikidata, conducted by 57 M.Sc. Computer Engineering students in two advanced Graph Database course editions. This resource includes 234 real exploratory workflows, each containing an average of 45 SPARQL queries and reference workflows that serve as gold-standard solutions to the proposed tasks. The ESW collection is also available as an RDF graph and accessible via a public SPARQL endpoint. It allows for analysis of real user sessions, understanding query evolution and complexity, and serves as the first query benchmark for KG management systems for exploratory search.
Matteo Lissandrini, Gianmarco Prando, Gianmaria Silvello
J. Web Semant.3
2024 Veracity Estimation for Entity-Oriented Search with Knowledge Graphs
abstract
In this paper, we discuss the potential costs that emerge from using a Knowledge Graph (KG) in entity-oriented search without considering its data veracity. We argue for the need for KG veracity analysis to gain insights and propose a scalable assessment framework. Previous assessments focused on relevance, assuming correct KGs, and overlooking the potential risks of misinformation. Our approach strategically allocates annotation resources, optimizing utility and revealing the significant impact of veracity on entity search and card generation. Contributions include a fresh perspective on entity-oriented search extending beyond the conventional focus on relevance, a scalable assessment framework, exploratory experiments highlighting the impact of veracity on ranking and user experience, as well as outlining associated challenges and opportunities.
Stefano Marchesin 0001, Gianmaria Silvello, Omar Alonso
CIKM2
2024 Content-Based Dataset Retrieval Methods: Reproducibility of the ACORDAR Test Collection
Laura Menotti, Manuel Barusco, Riccardo Forzan, Gianmaria Silvello
TPDL (1)4
2024 Reproducibility and Analysis of Scientific Dataset Recommendation Methods
abstract
Datasets play a central role in scholarly communications. However, scholarly graphs are often incomplete, particularly due to the lack of connections between publications and datasets. Therefore, the importance of dataset recommendation—identifying relevant datasets for a scientific paper, an author, or a textual query—is increasing. Although various methods have been proposed for this task, their reproducibility remains unexplored, making it difficult to compare them with new approaches. We reviewed current recommendation methods for scientific datasets, focusing on the most recent and competitive approaches, including an SVM-based model, a bi-encoder retriever, a method leveraging co-authors and citation network embeddings, and a heterogeneous variational graph autoencoder. These approaches underwent a comprehensive analysis under consistent experimental conditions. Our reproducibility efforts show that three methods can be reproduced, while the graph variational autoencoder is challenging due to unavailable code and test datasets. Hence, we re-implemented this method and performed a component-based analysis to examine its strengths and limitations. Furthermore, our study indicated that three out of four considered methods produce subpar results when applied to real-world data instead of specialized datasets with ad-hoc features.
Ornella Irrera, Matteo Lissandrini, Daniele Dell'Aglio, Gianmaria Silvello
RecSys4
2024 MetaTron: advancing biomedical annotation empowering relation annotation and collaboration
abstract
BACKGROUND: The constant growth of biomedical data is accompanied by the need for new methodologies to effectively and efficiently extract machine-readable knowledge for training and testing purposes. A crucial aspect in this regard is creating large, often manually or semi-manually, annotated corpora vital for developing effective and efficient methods for tasks like relation extraction, topic recognition, and entity linking. However, manual annotation is expensive and time-consuming especially if not assisted by interactive, intuitive, and collaborative computer-aided tools. To support healthcare experts in the annotation process and foster annotated corpora creation, we present MetaTron. MetaTron is an open-source and free-to-use web-based annotation tool to annotate biomedical data interactively and collaboratively; it supports both mention-level and document-level annotations also integrating automatic built-in predictions. Moreover, MetaTron enables relation annotation with the support of ontologies, functionalities often overlooked by off-the-shelf annotation tools. RESULTS: We conducted a qualitative analysis to compare MetaTron with a set of manual annotation tools including TeamTat, INCEpTION, LightTag, MedTAG, and brat, on three sets of criteria: technical, data, and functional. A quantitative evaluation allowed us to assess MetaTron performances in terms of time and number of clicks to annotate a set of documents. The results indicated that MetaTron fulfills almost all the selected criteria and achieves the best performances. CONCLUSIONS: MetaTron stands out as one of the few annotation tools targeting the biomedical domain supporting the annotation of relations, and fully customizable with documents in several formats-PDF included, as well as abstracts retrieved from PubMed, Semantic Scholar, and OpenAIRE. To meet any user need, we released MetaTron both as an online instance and as a Docker image locally deployable.
Ornella Irrera, Stefano Marchesin 0001, Gianmaria Silvello
BMC Bioinform.3
2024 Multimodal representations of biomedical knowledge from limited training whole slide images and reports using deep learning
abstract
The increasing availability of biomedical data creates valuable resources for developing new deep learning algorithms to support experts, especially in domains where collecting large volumes of annotated data is not trivial. Biomedical data include several modalities containing complementary information, such as medical images and reports: images are often large and encode low-level information, while reports include a summarized high-level description of the findings identified within data and often only concerning a small part of the image. However, only a few methods allow to effectively link the visual content of images with the textual content of reports, preventing medical specialists from properly benefitting from the recent opportunities offered by deep learning models. This paper introduces a multimodal architecture creating a robust biomedical data representation encoding fine-grained text representations within image embeddings. The architecture aims to tackle data scarcity (combining supervised and self-supervised learning) and to create multimodal biomedical ontologies. The architecture is trained on over 6,000 colon whole slide Images (WSI), paired with the corresponding report, collected from two digital pathology workflows. The evaluation of the multimodal architecture involves three tasks: WSI classification (on data from pathology workflow and from public repositories), multimodal data retrieval, and linking between textual and visual concepts. Noticeably, the latter two tasks are available by architectural design without further training, showing that the multimodal architecture that can be adopted as a backbone to solve peculiar tasks. The multimodal data representation outperforms the unimodal one on the classification of colon WSIs and allows to halve the data needed to reach accurate performance, reducing the computational power required and thus the carbon footprint. The combination of images and reports exploiting self-supervised algorithms allows to mine databases without needing new annotations provided by experts, extracting new information. In particular, the multimodal visual ontology, linking semantic concepts to images, may pave the way to advancements in medicine and biomedical analysis domains, not limited to histopathology.
Niccolò Marini, Stefano Marchesin 0001, Marek Wodzinski, Alessandro Caputo, Damian Podareanu, Bryan Cardenas Guevara, Svetla Boytcheva, Simona Vatrano, Filippo Fraggetta, Francesco Ciompi, Gianmaria Silvello, Henning Müller, Manfredo Atzori
Medical Image Anal.11
2024 Efficient and Reliable Estimation of Knowledge Graph Accuracy
abstract
Data accuracy is a central dimension of data quality, especially when dealing with Knowledge Graphs (KGs). Auditing the accuracy of KGs is essential to make informed decisions in entity-oriented services or applications. However, manually evaluating the accuracy of large-scale KGs is prohibitively expensive, and research is focused on developing efficient sampling techniques for estimating KG accuracy. This work addresses the limitations of current KG accuracy estimation methods, which rely on the Wald method to build confidence intervals, addressing reliability issues such as zero-width and overshooting intervals. Our solution, rooted in the Wilson method and tailored for complex sampling designs, overcomes these limitations and ensures applicability across various evaluation scenarios. We show that the presented methods increase the reliability of accuracy estimates by up to two times when compared to the state-of-the-art while preserving or enhancing efficiency. Additionally, this consistency holds regardless of the KG size or topology.
Stefano Marchesin 0001, Gianmaria Silvello
Proc. VLDB Endow.2
2023 Tracing Data Footprints: Formal and Informal Data Citations in the Scientific Literature
Ornella Irrera, Andrea Mannocci, Paolo Manghi, Gianmaria Silvello
TPDL4
2023 How to Cite a Web Ranking and Make it FAIR
Alessandro Lotta, Gianmaria Silvello
TPDL2
2023 Searching for Reliable Facts over a Medical Knowledge Base
abstract
This work presents CoreKB, a Web platform for searching reliable facts over gene expression-cancer associations Knowledge Base (KB). It provides search capabilities over an RDF graph using natural language queries, structured facets, and autocomplete. CoreKB is designed to be intuitive and easy to use for healthcare professionals, medical researchers, and clinicians. The system offers the user a comprehensive overview of the scientific evidence supporting a medical fact. It provides a quantitative comparison between the possible gene-cancer associations a particular fact can reflect.
Fabio Giachelle, Stefano Marchesin 0001, Gianmaria Silvello, Omar Alonso
SIGIR3
2023 Pairwise Fairness in Ranking as a Dissatisfaction Measure
abstract
Fairness and equity have become central to ranking problems in information access systems, such as search engines, recommender systems, or marketplaces. To date, several types of fair ranking measures have been proposed, including diversity, exposure, and pairwise fairness measures. Out of those, pairwise fairness is a family of metrics whose normative grounding has not been clearly explicated, leading to uncertainty with respect to the construct that is being measured and how it relates to stakeholders' desiderata.
Alessandro Fabris, Gianmaria Silvello, Gian Antonio Susto, Asia J. Biega
WSDM2
2022 DocTAG: A Customizable Annotation Tool for Ground Truth Creation
Fabio Giachelle, Ornella Irrera, Gianmaria Silvello
ECIR (2)3
2022 TBGA: a large-scale Gene-Disease Association dataset for Biomedical Relation Extraction
abstract
BACKGROUND: Databases are fundamental to advance biomedical science. However, most of them are populated and updated with a great deal of human effort. Biomedical Relation Extraction (BioRE) aims to shift this burden to machines. Among its different applications, the discovery of Gene-Disease Associations (GDAs) is one of BioRE most relevant tasks. Nevertheless, few resources have been developed to train models for GDA extraction. Besides, these resources are all limited in size-preventing models from scaling effectively to large amounts of data. RESULTS: To overcome this limitation, we have exploited the DisGeNET database to build a large-scale, semi-automatically annotated dataset for GDA extraction. DisGeNET stores one of the largest available collections of genes and variants involved in human diseases. Relying on DisGeNET, we developed TBGA: a GDA extraction dataset generated from more than 700K publications that consists of over 200K instances and 100K gene-disease pairs. Each instance consists of the sentence from which the GDA was extracted, the corresponding GDA, and the information about the gene-disease pair. CONCLUSIONS: TBGA is amongst the largest datasets for GDA extraction. We have evaluated state-of-the-art models for GDA extraction on TBGA, showing that it is a challenging and well-suited dataset for the task. We made the dataset publicly available to foster the development of state-of-the-art BioRE models for GDA extraction.
Stefano Marchesin 0001, Gianmaria Silvello
BMC Bioinform.2
2022 Algorithmic fairness datasets: the story so far
abstract
Abstract Data-driven algorithms are studied and deployed in diverse domains to support critical decisions, directly impacting people’s well-being. As a result, a growing community of researchers has been investigating the equity of existing algorithms and proposing novel ones, advancing the understanding of risks and opportunities of automated decision-making for historically disadvantaged populations. Progress in fair machine learning and equitable algorithm design hinges on data, which can be appropriately used only if adequately documented. Unfortunately, the algorithmic fairness community, as a whole, suffers from a collective data documentation debt caused by a lack of information on specific resources (opacity) and scatteredness of available information (sparsity). In this work, we target this data documentation debt by surveying over two hundred datasets employed in algorithmic fairness research, and producing standardized and searchable documentation for each of them. Moreover we rigorously identify the three most popular fairness datasets, namely Adult, COMPAS, and German Credit, for which we compile in-depth documentation. This unifying documentation effort supports multiple contributions. Firstly, we summarize the merits and limitations of Adult, COMPAS, and German Credit, adding to and unifying recent scholarship, calling into question their suitability as general-purpose fairness benchmarks. Secondly, we document hundreds of available alternatives, annotating their domain and supported fairness tasks, along with additional properties of interest for fairness practitioners and researchers, including their format, cardinality, and the sensitive attributes they encode. We summarize this information, zooming in on the tasks, domains, and roles of these resources. Finally, we analyze these datasets from the perspective of five important data curation topics: anonymization, consent, inclusivity, labeling of sensitive attributes, and transparency. We discuss different approaches and levels of attention to these topics, making them tangible, and distill them into a set of best practices for the curation of novel resources.
Alessandro Fabris, Stefano Messina, Gianmaria Silvello, Gian Antonio Susto
Data Min. Knowl. Discov.3
2022 Credit distribution in relational scientific databases
abstract
Digital data is a basic form of research product for which citation, and the generation of credit or recognition for authors, are still not well understood. The notion of data credit has therefore recently emerged as a new measure, defined and based on data citation groundwork. Data credit is a real value representing the importance of data cited by a research entity. We can use credit to annotate data contained in a curated scientific database and then as a proxy of the significance and impact of that data in the research world. It is a method that, together with citations, helps recognize the value of data and its creators. In this paper, we explore the problem of Data Credit Distribution, the process by which credit is distributed to the database parts responsible for producing data being cited by a research entity. We adopt as use case the IUPHAR/BPS Guide to Pharmacology (GtoPdb), a widely-used curated scientific relational database. We focus on Select-Project-Join (SPJ) queries under bag semantics, and we define three distribution strategies based on how-provenance, responsibility, and the Shapley value. Using these distribution strategies, we show how credit can highlight frequently used database areas and how it can be used as a new bibliometric measure for data and their curators. In particular, credit rewards data and authors based on their research impact, not only on the citation count. We also show how these distribution strategies vary in their sensitivity to the role of an input tuple in the generation of the output data and reward input tuples differently.
Dennis Dosso, Susan B. Davidson, Gianmaria Silvello
Inf. Syst.3
2022 Learning to rank from relevance judgments distributions
abstract
Abstract LEarning TO Rank (LETOR) algorithms are usually trained on annotated corpora where a single relevance label is assigned to each available document‐topic pair. Within the Cranfield framework, relevance labels result from merging either multiple expertly curated or crowdsourced human assessments. In this paper, we explore how to train LETOR models with relevance judgments distributions (either real or synthetically generated) assigned to document‐topic pairs instead of single‐valued relevance labels. We propose five new probabilistic loss functions to deal with the higher expressive power provided by relevance judgments distributions and show how they can be applied both to neural and gradient boosting machine (GBM) architectures. Moreover, we show how training a LETOR model on a sampled version of the relevance judgments from certain probability distributions can improve its performance when relying either on traditional or probabilistic loss functions. Finally, we validate our hypothesis on real‐world crowdsourced relevance judgments distributions. Overall, we observe that relying on relevance judgments distributions to train different LETOR models can boost their performance and even outperform strong baselines such as LambdaMART on several test collections.
Alberto Purpura, Gianmaria Silvello, Gian Antonio Susto
J. Assoc. Inf. Sci. Technol.2
2021 Algorithmic Audit of Italian Car Insurance: Evidence of Unfairness in Access and Pricing
abstract
We conduct an audit of pricing algorithms employed by companies in the Italian car insurance industry, primarily by gathering quotes through a popular comparison website. While acknowledging the complexity of the industry, we find evidence of several problematic practices. We show that birthplace and gender have a direct and sizeable impact on the prices quoted to drivers, despite national and international regulations against their use. Birthplace, in particular, is used quite frequently to the disadvantage of foreign-born drivers and drivers born in certain Italian cities. In extreme cases, a driver born in Laos may be charged 1,000 more than a driver born in Milan, all else being equal. For a subset of our sample, we collect quotes directly on a company website, where the direct influence of gender and birthplace is confirmed. Finally, we find that drivers with riskier profiles tend to see fewer quotes in the aggregator result pages, substantiating concerns of differential treatment raised in the past by Italian insurance regulators.
Alessandro Fabris, Alan Mishler, Stefano Gottardi, Mattia Carletti, Matteo Daicampi, Gian Antonio Susto, Gianmaria Silvello
AIES7
2021 Neural Feature Selection for Learning to Rank
abstract
Abstract LEarning TO Rank (LETOR) is a research area in the field of Information Retrieval (IR) where machine learning models are employed to rank a set of items. In the past few years, neural LETOR approaches have become a competitive alternative to traditional ones like LambdaMART. However, neural architectures performance grew proportionally to their complexity and size. This can be an obstacle for their adoption in large-scale search systems where a model size impacts latency and update time. For this reason, we propose an architecture-agnostic approach based on a neural LETOR model to reduce the size of its input by up to 60% without affecting the system performance. This approach also allows to reduce a LETOR model complexity and, therefore, its training and inference time up to 50%.
Alberto Purpura, Karolina Buchner, Gianmaria Silvello, Gian Antonio Susto
ECIR (2)3
2020 Gender stereotype reinforcement: Measuring the gender bias conveyed by ranking algorithms
Alessandro Fabris, Alberto Purpura, Gianmaria Silvello, Gian Antonio Susto
Inf. Process. Manag.3
2020 Focal elements of neural information retrieval models. An outlook through a reproducibility study
abstract
This paper analyzes two state-of-the-art Neural Information Retrieval (NeuIR) models: the Deep Relevance Matching Model (DRMM) and the Neural Vector Space Model (NVSM). Our contributions include: (i) a reproducibility study of two state-of-the-art supervised and unsupervised NeuIR models, where we present the issues we encountered during their reproducibility; (ii) a performance comparison with other lexical, semantic and state-of-the-art models, showing that traditional lexical models are still highly competitive with DRMM and NVSM; (iii) an application of DRMM and NVSM on collections from heterogeneous search domains and in different languages, which helped us to analyze the cases where DRMM and NVSM can be recommended; (iv) an evaluation of the impact of varying word embedding models on DRMM, showing how relevance-based representations generally outperform semantic-based ones; (v) a topic-by-topic evaluation of the selected NeuIR approaches, comparing their performance to the well-known BM25 lexical model, where we perform an in-depth analysis of the different cases where DRMM and NVSM outperform the BM25 model or fail to do so. We run an extensive experimental evaluation to check if the improvements of NeuIR models, if any, over the selected baselines are statistically significant.
Stefano Marchesin 0001, Alberto Purpura, Gianmaria Silvello
Inf. Process. Manag.3
2020 Learning Unsupervised Knowledge-Enhanced Representations to Reduce the Semantic Gap in Information Retrieval
abstract
The semantic mismatch between query and document terms—i.e., the semantic gap—is a long-standing problem in Information Retrieval (IR). Two main linguistic features related to the semantic gap that can be exploited to improve retrieval are synonymy and polysemy. Recent works integrate knowledge from curated external resources into the learning process of neural language models to reduce the effect of the semantic gap. However, these knowledge-enhanced language models have been used in IR mostly for re-ranking and not directly for document retrieval. We propose the Semantic-Aware Neural Framework for IR (SAFIR), an unsupervised knowledge-enhanced neural framework explicitly tailored for IR. SAFIR jointly learns word, concept, and document representations from scratch. The learned representations encode both polysemy and synonymy to address the semantic gap. SAFIR can be employed in any domain where external knowledge resources are available. We investigate its application in the medical domain where the semantic gap is prominent and there are many specialized and manually curated knowledge resources. The evaluation on shared test collections for medical literature retrieval shows the effectiveness of SAFIR in terms of retrieving and ranking relevant documents most affected by the semantic gap.
Maristella Agosti, Stefano Marchesin 0001, Gianmaria Silvello
ACM Trans. Inf. Syst.3
2019 A Framework for Citing Nanopublications
Erika Fabris, Tobias Kuhn, Gianmaria Silvello
TPDL3
2019 A Scalable Virtual Document-Based Keyword Search System for RDF Datasets
abstract
RDF datasets are becoming increasingly useful with the development of knowledge-based web applications. SPARQL is the official structured query language to search and access RDF datasets. Despite its effectiveness, the language is often difficult to use for non-experts because of its syntax and the necessity to know the underlying data structure of the database queries. In this regard, keyword search enables non-expert users to access the data contained in RDF datasets intuitively. This work describes the TSA+VDP keyword search system for effective and efficient keyword search over large RDF datasets. The system is compared with other state-of-the-art methods on different datasets, both real-world and synthetic, using a new evaluation framework that is easily reproducible and sharable.
Dennis Dosso, Gianmaria Silvello
SIGIR2
2018 Statistical Stemmers: A Reproducibility Study
Gianmaria Silvello, Riccardo Bucco, Giulio Busato, Giacomo Fornari, Andrea Langeli, Alberto Purpura, Giacomo Rocco, Alessandro Tezza, Maristella Agosti
ECIR1
2018 Data Citation: Giving Credit Where Credit is Due
abstract
An increasing amount of information is being published in structured databases and retrieved using queries, raising the question of how query results should be cited. Since there are a large number of possible queries over a database, one strategy is to specify citations to a small set of frequent queries - citation views - and use these to construct citations to other "general" queries. We present three approaches to implementing citation views and describe alternative policies for the joint, alternate and aggregated use of citation views. Extensive experiments using both synthetic and realistic citation views and queries show the trade-offs between the approaches in terms of the time to generate citations, as well as the size of the resulting citation. They also show that the choice of policy has a huge effect both on performance and size, leading to useful guidelines for what policies to use and how to specify citation views.
Yinjun Wu, Abdussalam Alawini, Susan B. Davidson, Gianmaria Silvello
SIGMOD Conference4
2018 CLAIRE: A combinatorial visual analytics system for information retrieval evaluation
Marco Angelini, Vanessa Fazzini, Nicola Ferro 0001, Giuseppe Santucci, Gianmaria Silvello
Inf. Process. Manag.5
2018 Toward an anatomy of IR system component performances
abstract
Information retrieval (IR) systems are the prominent means for searching and accessing huge amounts of unstructured information on the web and elsewhere. They are complex systems, constituted by many different components interacting together, and evaluation is crucial to both tune and improve them. Nevertheless, in the current evaluation methodology, there is still no way to determine how much each component contributes to the overall performances and how the components interact together. This hampers the possibility of a deep understanding of IR system behavior and, in turn, prevents us from designing ahead which components are best suited to work together for a specific search task. In this paper, we move the evaluation methodology one step forward by overcoming these barriers and beginning to devise an “anatomy” of IR systems and their internals. In particular, we propose a methodology based on the General Linear Mixed Model (GLMM) and analysis of variance (ANOVA) to develop statistical models able to isolate system variance and component effects as well as their interaction, by relying on a grid of points (GoP) containing all the combinations of the analyzed components. We apply the proposed methodology to the analysis of two relevant search tasks—news search and web search—by using standard TREC collections. We analyze the basic set of components typically part of an IR system, namely, stop lists, stemmers, and n‐grams, and IR models. In this way, we derive insights about English text retrieval.
Nicola Ferro 0001, Gianmaria Silvello
J. Assoc. Inf. Sci. Technol.2
2018 Theory and practice of data citation
abstract
Citations are the cornerstone of knowledge propagation and the primary means of assessing the quality of research, as well as directing investments in science. Science is increasingly becoming “data‐intensive,” where large volumes of data are collected and analyzed to discover complex patterns through simulations and experiments, and most scientific reference works have been replaced by online curated data sets. Yet, given a data set, there is no quantitative, consistent, and established way of knowing how it has been used over time, who contributed to its curation, what results have been yielded, or what value it has. The development of a theory and practice of data citation is fundamental for considering data as first‐class research objects with the same relevance and centrality of traditional scientific products. Many works in recent years have discussed data citation from different viewpoints: illustrating why data citation is needed, defining the principles and outlining recommendations for data citation systems, and providing computational methods for addressing specific issues of data citation. The current panorama is many‐faceted and an overall view that brings together diverse aspects of this topic is still missing. Therefore, this paper aims to describe the lay of the land for data citation, both from the theoretical (the why and what) and the practical (the how) angle.
Gianmaria Silvello
J. Assoc. Inf. Sci. Technol.1
2017 A Model for Fine-Grained Data Citation
Susan B. Davidson, Daniel Deutch, Tova Milo, Gianmaria Silvello
CIDR4
2017 Data Citation: A Computational Challenge
abstract
Data citation is an interesting computational challenge, whose solution draws on several well-studied problems in database theory: query answering using views, and provenance. We describe the problem, suggest an approach to its solution, and highlight several open research problems, both practical and theoretical.
Susan B. Davidson, Peter Buneman, Daniel Deutch, Tova Milo, Gianmaria Silvello
PODS5
2017 3.5K runs, 5K topics, 3M assessments and 70M measures: What trends in 10 years of Adhoc-ish CLEF?
Nicola Ferro 0001, Gianmaria Silvello
Inf. Process. Manag.2
2017 Learning to cite framework: How to automatically construct citations for hierarchical data
abstract
The practice of citation is foundational for the propagation of knowledge along with scientific development and it is one of the core aspects on which scholarship and scientific publishing rely. Within the broad context of data citation, we focus on the automatic construction of citations problem for hierarchically structured data. We present the “learning to cite” framework, which enables the automatic construction of human‐ and machine‐readable citations with different levels of coarseness. The main goal is to reduce the human intervention on data to a minimum and to provide a citation system general enough to work on heterogeneous and complex XML data sets. We describe how this framework can be realized by a system for creating citations to single nodes within an XML data set and, as a use case, show how it can be applied in the context of digital archives. We conduct an extensive evaluation of the proposed citation system by analyzing its effectiveness from the correctness and completeness viewpoints, showing that it represents a suitable solution that can be easily employed in real‐world environments and that reduces human intervention on data to a minimum.
Gianmaria Silvello
J. Assoc. Inf. Sci. Technol.1
2016 A Visual Analytics Approach for What-If Analysis of Information Retrieval Systems
abstract
We present the innovative visual analytics approach of the VATE system, which eases and makes more effective the experimental evaluation process by introducing the what-if analysis. The what-if analysis is aimed at estimating the possible effects of a modification to an IR system to select the most promising fixes before implementing them, thus saving a considerable amount of effort. VATE builds on an analytical framework which models the behavior of the systems in order to make estimations, and integrates this analytical framework into a visual part which, via proper interaction and animations, receives input and provides feedback to the user.
Marco Angelini, Nicola Ferro 0001, Giuseppe Santucci, Gianmaria Silvello
SIGIR4
2016 A General Linear Mixed Models Approach to Study System Component Effects
abstract
Topic variance has a greater effect on performances than system variance but it cannot be controlled by system developers who can only try to cope with it. On the other hand, system variance is important on its own, since it is what system developers may affect directly by changing system components and it determines the differences among systems. In this paper, we face the problem of studying system variance in order to better understand how much system components contribute to overall performances. To this end, we propose a methodology based on General Linear Mixed Model (GLMM) to develop statistical models able to isolate system variance, component effects as well as their interaction by relying on a Grid of Points (GoP) containing all the combinations of analysed components. We apply the proposed methodology to the analysis of TREC Ad-hoc data in order to show how it works and discuss some interesting outcomes of this new kind of analysis. Finally, we extend the analysis to different evaluation measures, showing how they impact on the sources of variance.
Nicola Ferro 0001, Gianmaria Silvello
SIGIR2
2016 Digital library interoperability at high level of abstraction
Maristella Agosti, Nicola Ferro 0001, Gianmaria Silvello
Future Gener. Comput. Syst.3
2016 Descendants, ancestors, children and parent: A set-based approach to efficiently address XPath primitives
Nicola Ferro 0001, Gianmaria Silvello
Inf. Process. Manag.2
2016 The twist measure for IR evaluation: Taking user's effort into account
abstract
We present a novel measure for ranking evaluation, called Twist (τ). It is a measure for informational intents, which handles both binary and graded relevance. τ stems from the observation that searching is currently a that searching is currently taken for granted and it is natural for users to assume that search engines are available and work well. As a consequence, users may assume the utility they have in finding relevant documents, which is the focus of traditional measures, as granted. On the contrary, they may feel uneasy when the system returns nonrelevant documents because they are then forced to do additional work to get the desired information, and this causes avoidable effort. The latter is the focus of τ, which evaluates the effectiveness of a system from the point of view of the effort required to the users to retrieve the desired information. We provide a formal definition of τ, a demonstration of its properties, and introduce the notion of effort/gain plots, which complement traditional utility‐based measures. By means of an extensive experimental evaluation, τ is shown to grasp different aspects of system performances, to not require extensive and costly assessments, and to be a robust tool for detecting differences between systems.
Nicola Ferro 0001, Gianmaria Silvello, Heikki Keskustalo, Ari Pirkola, Kalervo Järvelin
J. Assoc. Inf. Sci. Technol.2
2015 Visual Analytics for Information Retrieval Evaluation (VAIRË 2015)
Marco Angelini, Nicola Ferro 0001, Giuseppe Santucci, Gianmaria Silvello
ECIR4
2015 Rank-Biased Precision Reloaded: Reproducibility and Generalization
Nicola Ferro 0001, Gianmaria Silvello
ECIR2
2014 A Visual Interactive Environment for Making Sense of Experimental Data
Marco Angelini, Nicola Ferro 0001, Giuseppe Santucci, Gianmaria Silvello
ECIR4
2014 A Vector Space Model for Syntactic Distances Between Dialects
Emanuele Di Buccio, Giorgio Maria Di Nunzio, Gianmaria Silvello
LREC3
2013 An Open Source System Architecture for Digital Geolinguistic Linked Open Data
Emanuele Di Buccio, Giorgio Maria Di Nunzio, Gianmaria Silvello
TPDL3
2013 Formal Models for Digital Archives: NESTOR and the 5S
Nicola Ferro 0001, Gianmaria Silvello
TPDL2
2013 A geolinguistic web application based on linked open data
abstract
Digital Geolinguistic systems encourage collaboration between linguists, historians, archaeologists, ethnographers, as they explore the relationship between language and cultural adaptation and change. In this demo, we propose a Linked Open Data approach for increasing the level of interoperability of geolinguistic applications and the reuse of the data. We present a case study of a geolinguistic project named Atlante Sintattico d'Italia, Syntactic Atlas of Italy (ASIt).
Emanuele Di Buccio, Giorgio Maria Di Nunzio, Gianmaria Silvello
SIGIR3
2013 NESTOR: A formal model for digital archives
Nicola Ferro 0001, Gianmaria Silvello
Inf. Process. Manag.2
2012 A System for Exposing Linguistic Linked Open Data
Emanuele Di Buccio, Giorgio Maria Di Nunzio, Gianmaria Silvello
TPDL3
2009 Access and Exchange of Hierarchically Structured Resources on the Web with the NESTOR Framework
abstract
The paper addresses the problem of representing, managing and exchanging hierarchically structured data in the context of Digital Library (DL) systems in order to enhance the access and exchange DL resources on the Web. We propose the NEsted SeTs for Object hieRarchies (NESTOR) framework, which relies on two set data models — the “Nested Set Model (NS-M)” and the “Inverse Nested Set Model (INS-M)” — to enable the representation of hierarchical data structures by means of a proper organization of nested sets. In particular, we show how NESTOR can be effectively exploited to enhance Open Archives Initiative Protocol for Metadata Harvesting (OAI-PMH) for better access and exchange of hierarchical resources on the Web.
Maristella Agosti, Nicola Ferro 0001, Gianmaria Silvello
Web Intelligence3