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D. Venezia

dblp:82/2024 · DBLP profile ↗
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2ranked-venue papers
1as first author
0since 2021 · last 1993
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › sequence analysis
sequence motif analysis		 0.011993
Rapid motif compliance scoring with match weight sets · Comput. Appl. Biosci. 1993
Bioinformatics and computational biology › genomics
primer design		 0.011991
PRIMEGEN, a tool for designing primers from multiple alignments · Comput. Appl. Biosci. 1991

Methods — techniques the papers use, named apart from their topics

weight matrix scoring · 0.0backtracking tree search · 0.0
YearPublicationVenuePosition
1993 Rapid motif compliance scoring with match weight sets
abstract
Most current implementations of motif matching in biological sequences have sacrificed the generality of weight matrix scoring for shorter runtimes. The program MOTIF incorporates a weight matrix and a rapid, backtracking tree-search algorithm to score motif compliance with greatly enhanced performance while placing no constraints on the motif. In addition, any positions within a motif can be marked as 'inviolate', thereby requiring an exact match. MOTIF allows a choice of regular expression formats and can use both motif and sequence libraries as either targets or queries. Nucleic acid sequences can optionally be translated by MOTIF in any frame(s) and used against peptide motifs.
D. Venezia, P. J. O'Hara
 Comput. Appl. Biosci.1
1991 PRIMEGEN, a tool for designing primers from multiple alignments
abstract
Patrick J.O' Hara, Domenick Venezia; PRIMEGEN, a tool for designing primers from multiple alignments, Bioinformatics, Volume 7, Issue 4, 1 October 1991, Pa
P. J. O'Hara, D. Venezia
 Comput. Appl. Biosci.2