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Naoki Abe

dblp:88/6485 · DBLP profile ↗
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66ranked-venue papers
25as first author
18since 2021 · last 2025
0000-0002-4048-3989ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 48 · 21 first-author · 13 since 2021Databases, data management, data science and information retrieval · 24 · 8 first-author · 8 since 2021Theory of computation · 7 · 3 first-authorGraphics, computer vision, multimedia, augmented reality and games · 5 · 4 since 2021Applied, interdisciplinary, general and emerging computing · 5 · 1 first-author · 2 since 2021Computer networks · 2 · 1 first-authorSoftware engineering, systems software and programming languages · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
22 papers
Trustworthy machine learning · 28% Graph learning · 25% Probabilistic and Bayesian machine learning · 18%
Computer architecture, parallel and distributed computing, and storage systems
4 papers
Distributed systems · 31% Cloud and datacenter computing · 28% Electronic design automation · 26%
Databases, data mining, and information retrieval
12 papers
Data mining · 97% Recommender systems · 2% Information retrieval · 0%
Theoretical computer science
6 papers
Algorithmic game theory and mechanism design · 61% Mathematical optimization · 37% Automata and formal languages · 1%
Interdisciplinary, comprehensive, and emerging computing
10 papers
Environmental and earth informatics · 49% Computational social science and digital humanities · 27% Bioinformatics and computational biology · 21%

Topics — the 30 heaviest of 90, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Electronic design automation › hardware test
fault localization
1.222023
Fault Injection Based Interventional Causal Learning for Distributed Applications · AAAI 2023
A fault injection platform for learning AIOps models · ASE 2022
Distributed systems
fault tolerance
1.222023
Fault Injection Based Interventional Causal Learning for Distributed Applications · AAAI 2023
A fault injection platform for learning AIOps models · ASE 2022
Machine learning › Trustworthy machine learning › interpretability › explainable AI
anomaly explanation
1.222023
Generative Perturbation Analysis for Probabilistic Black-Box Anomaly Attribution · KDD 2023
Anomaly Attribution with Likelihood Compensation · AAAI 2021
Machine learning › Trustworthy machine learning
interpretability
1.222023
Generative Perturbation Analysis for Probabilistic Black-Box Anomaly Attribution · KDD 2023
Anomaly Attribution with Likelihood Compensation · AAAI 2021
Machine learning › Reinforcement learning
agent evaluation
0.912025
ITBench: Evaluating AI Agents across Diverse Real-World IT Automation Tasks · ICML 2025
Algorithmic game theory and mechanism design › multi-armed bandit
combinatorial contextual bandit
0.912025
Practical Contextual Bandits for Large-Scale Structured Discrete Constrained Optimization Problems · KDD (2) 2025
Algorithmic game theory and mechanism design › multi-armed bandit
contextual bandits
0.912025
Practical Contextual Bandits for Large-Scale Structured Discrete Constrained Optimization Problems · KDD (2) 2025
Cloud and datacenter computing
microservices
0.712023
Fault Injection Based Interventional Causal Learning for Distributed Applications · AAAI 2023
Machine learning › Graph learning › network embedding
directed graph embedding
0.612022
Directed Graph Auto-Encoders · AAAI 2022
Machine learning › Graph learning
graph autoencoder
0.612022
Directed Graph Auto-Encoders · AAAI 2022
Machine learning › Graph learning
graph neural network
0.612022
Directed Graph Auto-Encoders · AAAI 2022
Machine learning › Graph learning
graph representation learning
0.612022
Directed Graph Auto-Encoders · AAAI 2022
Hardware reliability and fault tolerance
fault injection
0.612022
A fault injection platform for learning AIOps models · ASE 2022
Machine learning › Probabilistic and Bayesian machine learning › causal inference › causal discovery
granger causality
0.512021
Cardinality-Regularized Hawkes-Granger Model · NeurIPS 2021
Machine learning › Probabilistic and Bayesian machine learning › stochastic processes › point process › temporal point process
hawkes process
0.512021
Cardinality-Regularized Hawkes-Granger Model · NeurIPS 2021
Data mining
anomaly detection
0.512021
Anomaly Attribution with Likelihood Compensation · AAAI 2021
Data mining › causal inference
causal modeling
0.332009
Spatial-temporal causal modeling for climate change attribution · KDD 2009
Grouped graphical Granger modeling methods for temporal causal modeling · KDD 2009
Temporal causal modeling with graphical granger methods · KDD 2007
Machine learning › Trustworthy machine learning
AI safety
0.312025
ITBench: Evaluating AI Agents across Diverse Real-World IT Automation Tasks · ICML 2025
Cloud and datacenter computing
autoscaling
0.312025
Practical Contextual Bandits for Large-Scale Structured Discrete Constrained Optimization Problems · KDD (2) 2025
Cloud and datacenter computing
resource management
0.312025
Practical Contextual Bandits for Large-Scale Structured Discrete Constrained Optimization Problems · KDD (2) 2025
Hardware reliability and fault tolerance › error modeling
error propagation
0.212022
A fault injection platform for learning AIOps models · ASE 2022
Cloud and datacenter computing › microservices
microservice applications
0.212022
A fault injection platform for learning AIOps models · ASE 2022
Data mining › causal inference › causal modeling › causal discovery
granger causality
0.222009
Grouped graphical Granger modeling methods for temporal causal modeling · KDD 2009
Temporal causal modeling with graphical granger methods · KDD 2007
Data mining › time series analysis
time series forecasting
0.212013
Collective Response Spike Prediction for Mutually Interacting Consumers · ICDM 2013
Machine learning › Kernel, tree and ensemble methods › ensemble learning
boosting
0.232008
Multi-class cost-sensitive boosting with p-norm loss functions · KDD 2008
An iterative method for multi-class cost-sensitive learning · KDD 2004
Query Learning Strategies Using Boosting and Bagging · ICML 1998
Machine learning › Reinforcement learning › markov decision process
constrained markov decision process
0.112010
Optimizing debt collections using constrained reinforcement learning · KDD 2010
Machine learning › Reinforcement learning
constrained reinforcement learning
0.112010
Optimizing debt collections using constrained reinforcement learning · KDD 2010
Machine learning › Learning theory › model selection
variable selection
0.112009
Grouped Orthogonal Matching Pursuit for Variable Selection and Prediction · NIPS 2009
Environmental and earth informatics
climate modeling
0.112009
Spatial-temporal causal modeling for climate change attribution · KDD 2009
Bioinformatics and computational biology
gene expression analysis
0.112009
Grouped graphical Granger modeling for gene expression regulatory networks discovery · Bioinform. 2009

Methods — techniques the papers use, named apart from their topics

risk-averse learning · 1.7inverse gap weighting · 1.7column generation · 1.7benchmarking · 1.7likelihood compensation · 1.0mixed-integer programming · 0.9mixed integer programming · 0.9generative modeling · 0.8foundation model · 0.8knowledge discovery · 0.7interventional causal learning · 0.7generative perturbation analysis · 0.7fault injection · 0.7data science · 0.7black-box regression · 0.7weisfeiler-leman algorithm · 0.6machine learning · 0.6graph convolutional network · 0.6
YearPublicationVenuePosition
2025 ITBench: Evaluating AI Agents across Diverse Real-World IT Automation Tasks
abstract
Realizing the vision of using AI agents to automate critical IT tasks depends on the ability to measure and understand effectiveness of proposed solutions. We introduce ITBench, a framework that offers a systematic methodology for benchmarking AI agents to address real-world IT automation tasks. Our initial release targets three key areas: Site Reliability Engineering (SRE), Compliance and Security Operations (CISO), and Financial Operations (FinOps). The design enables AI researchers to understand the challenges and opportunities of AI agents for IT automation with push-button workflows and interpretable metrics. IT-Bench includes an initial set of 102 real-world scenarios, which can be easily extended by community contributions. Our results show that agents powered by state-of-the-art models resolve only 11.4% of SRE scenarios, 25.2% of CISO scenarios, and 25.8% of FinOps scenarios (excluding anomaly detection). For FinOps-specific anomaly detection (AD) scenarios, AI agents achieve an F1 score of 0.35. We expect ITBench to be a key enabler of AI-driven IT automation that is correct, safe, and fast. IT-Bench, along with a leaderboard and sample agent implementations, is available at https://github.com/ibm/itbench.
Saurabh Jha, Rohan R. Arora, Yuji Watanabe, Takumi Yanagawa, Yinfang Chen, Jackson Clark, Bhavya, Mudit Verma, Hirokuni Kitahara, Noah Zheutlin, Saki Takano, Divya Pathak, Felix George, Xinbo Wu, Bekir O. Turkkan, Gerard Vanloo, Michael Nidd, Oishik Chatterjee, Pranjal Gupta, Suranjana Samanta, Pooja Aggarwal, Rong Lee, Jae-wook Ahn, Debanjana Kar, Amit M. Paradkar, Yu Deng 0004, Pratibha Moogi, Prateeti Mohapatra, Naoki Abe, Chandrasekhar Narayanaswami 0001, Tianyin Xu, Lav R. Varshney, Ruchi Mahindru, Anca Sailer, Larisa Shwartz, Daby M. Sow, Nicholas C. Fuller, Ruchir Puri
ICML31
2025 Fragile Earth: Innovative AI For Climate Risk Mitigation
abstract
The Fragile Earth Workshop is a recurring event in ACM's KDD Conference on research in knowledge discovery and data mining that gathers the research community to find and explore how data science can measure and progress climate and social issues, following the United Nations Sustainable Development Goals (SDGs) framework.
Emre Eftelioglu, Naoki Abe, Ramakrishnan Kannan, Kathleen Buckingham, Auroop R. Ganguly, James Hodson 0003
KDD (2)2
2025 Practical Contextual Bandits for Large-Scale Structured Discrete Constrained Optimization Problems
abstract
We address the contextual bandit problem for high-dimensional combinatorial action spaces involving a class of structured discrete constrained optimization problems. In this setting, key quantities within the optimization formulation, such as performance indicators contributing to the objective or constraints, must be estimated from data during the trial sequence of optimized actions. These problems frequently arise in the many operations management domains including IT resource allocation and retail assortment price optimization. We propose a novel, practical, and transparent approach based on general-purpose regression oracles, leveraging Inverse Gap Weighting (IGW) for seamless integration within an optimization framework. IGW sampling is efficiently managed by: (a) a column generation reformulation of the underlying Mixed Integer Programming (MIP) model which allows for flexible lower-level predictors, causal coherence, and efficient representation of large action spaces;(b) a diverse solution pool generation to balance the exploration-exploitation trade-off in large action spaces. To address non-smoothness in the reward function due to optimization constraints, we incorporate a risk-averse phased learning strategy. We validate our approach on a real-world auto-scaling problem in IT automation, achieving a significant reduction in cumulative regret through skillful exploration, with additional gains from risk-averse methods that effectively manage constraint violations.
Pavithra Harsha, Naoki Abe, Shivaram Subramanian, Amadou Ba, Kevin Arturo Fernández Román, Mauricio Longinos Garrido, Chandrasekhar Narayanaswami 0001
KDD (2)3
2025 Sequential uncertainty quantification with contextual tensors for social targeting
Tsuyoshi Idé, Keerthiram Murugesan, Djallel Bouneffouf 0001, Naoki Abe
Knowl. Inf. Syst.4
2024 SAM: Subseries Augmentation-Based Meta-Learning for Generalizing AIOps Models in Multi-Cloud Migration
abstract
In the context of cloud computing, enterprises are increasingly adopting multi-cloud strategies to enhance performance, ensure cost efficiency, and avoid vendor lock-in. This trend presents a significant challenge for the migration of AI for IT operations (AIOps) models across different cloud providers due to variations in architecture, performance, and data distribution. Traditional methods of re-training AIOps models for new cloud environments are labor-intensive and delay deployment. To address this issue, we introduce a novel framework called SAM (Subseries Augmentation-based Meta-learning), which facilitates seamless model migration between clouds without the need for re-training from scratch. SAM leverages data augmentation and meta-learning to efficiently adapt AIOps models to new cloud environments. It has proven effective in adapting anomaly detectors across various config-urations over both public and simulated datasets. We believe that SAM can also be adapted to other AI models used for automating IT tasks such as alerting and resource scaling.
Paulito Palmes, Saurabh Jha, Bekir O. Turkkan, Gerard Vanloo, Frank Bagehorn, Chandrasekhar Narayanaswami 0001, Larisa Shwartz, Naoki Abe, Yu Deng 0004, Daby M. Sow
CLOUD9
2024 Learning Granger Causality from Instance-wise Self-attentive Hawkes Processes
abstract
We address the problem of learning Granger causality from asynchronous, interdependent, multi-type event sequences. In particular, we are interested in discovering instance-level causal structures in an unsupervised manner. Instance-level causality identifies causal relationships among individual events, providing more fine-grained information for decision-making. Existing work in the literature either requires strong assumptions, such as linearity in the intensity function, or heuristically defined model parameters that do not necessarily meet the requirements of Granger causality. We propose Instance-wise Self-Attentive Hawkes Processes (ISAHP), a novel deep learning framework that can directly infer the Granger causality at the event instance level. ISAHP is the first neural point process model that meets the requirements of Granger causality. It leverages the self-attention mechanism of the transformer to align with the principles of Granger causality. We empirically demonstrate that ISAHP is capable of discovering complex instance-level causal structures that cannot be handled by classical models. We also show that ISAHP achieves state-of-the-art performance in proxy tasks involving type-level causal discovery and instance-level event type prediction.
Dongxia Wu, Tsuyoshi Idé, Georgios Kollias, Jirí Navrátil 0001, Aurélie C. Lozano, Naoki Abe, Yi-An Ma, Rose Yu
AISTATS6
2024 Fragile Earth: Generative and Foundational Models for Sustainable Development
abstract
The Fragile Earth Workshop is a recurring event in ACM's KDD Conference on research in knowledge discovery and data mining that gathers the research community to find and explore how data science can measure and progress climate and social issues, following the United Nations Sustainable Development Goals (SDGs) framework.
Emre Eftelioglu, Bistra Dilkina, Naoki Abe, Ramakrishnan Kannan, Yulia R. Gel, Kathleen Buckingham, Auroop R. Ganguly, James Hodson 0003, Jiafu Mao
KDD3
2023 Fault Injection Based Interventional Causal Learning for Distributed Applications
abstract
We apply the machinery of interventional causal learning with programmable interventions to the domain of applications management. Modern applications are modularized into interdependent components or services (e.g. microservices) for ease of development and management. The communication graph among such components is a function of application code and is not always known to the platform provider. In our solution we learn this unknown communication graph solely using application logs observed during the execution of the application by using fault injections in a staging environment. Specifically, we have developed an active (or interventional) causal learning algorithm that uses the observations obtained during fault injections to learn a model of error propagation in the communication among the components. The “power of intervention” additionally allows us to address the presence of confounders in unobserved user interactions. We demonstrate the effectiveness of our solution in learning the communication graph of well-known microservice application benchmarks. We also show the efficacy of the solution on a downstream task of fault localization in which the learned graph indeed helps to localize faults at runtime in a production environment (in which the location of the fault is unknown). Additionally, we briefly discuss the implementation and deployment status of a fault injection framework which incorporates the developed technology.
Qing Wang 0016, Jesus Rios, Saurabh Jha, Karthikeyan Shanmugam 0001, Frank Bagehorn, Robert Filepp, Naoki Abe, Larisa Shwartz
AAAI8
2023 Direction Aware Positional and Structural Encoding for Directed Graph Neural Networks
abstract
We propose a novel method for computing joint 2-node structural representations for link prediction in directed graphs. Existing approaches can be grouped into two families. The first group of methods learn structural embeddings of individual nodes in the entire graph through a directed Graph Neural Network (GNNs), and then combine pairs of the encodings to get a representation for the respective node pairs. Methods in the second group compute a representation of the subgraph enclosing the two nodes by employing GNNs initialized with positional encodings and consider these as their potential edge embeddings. Both families of link prediction techniques suffer from considerable shortcomings: The former fail to differentiate two distant nodes with similar neighborhoods; The latter, although provably appropriate for learning edge representations, adopt undirected GNNs, positional encodings, and subgraphs, so the edge direction signal is inevitably lost. Our proposal is also based on the idea of enclosing subgraphs, but the subgraphs are assumed directed, and directed Graph Neural Networks (GNNs) are used to learn their node encodings and initial positional embeddings are direction-aware. Our emphasis on capturing the direction of edges is reflected in superior performance in the link prediction task against baselines with undirected GNNs on symmetrized enclosing subgraphs and existing directed GNNs over a collection of benchmark graph datasets.1
Yonas Sium, Georgios Kollias, Tsuyoshi Idé, Naoki Abe, Aurélie C. Lozano, Qi Li 0012
ICASSP5
2023 Fragile Earth: AI for Climate Sustainability - From Wildfire Disaster Management to Public Health and Beyond
abstract
The Fragile Earth Workshop is a recurring event in ACM's KDD Conference on research in knowledge discovery and data mining that gathers the research community to find and explore how data science can measure and progress climate and social issues, fol- lowing the United Nations Sustainable Development Goals (SDGs) framework.
Naoki Abe, Kathleen Buckingham, Bistra Dilkina, Emre Eftelioglu, Auroop R. Ganguly, Yulia R. Gel, James Hodson 0003, Ramakrishnan Kannan, Huikyo Lee, Jiafu Mao, Rose Yu
KDD1
2023 Generative Perturbation Analysis for Probabilistic Black-Box Anomaly Attribution
abstract
We address the task of probabilistic anomaly attribution in the black-box regression setting, where the goal is to compute the probability distribution of the attribution score of each input variable, given an observed anomaly. The training dataset is assumed to be unavailable. This task differs from the standard XAI (explainable AI) scenario, since we wish to explain the anomalous deviation from a black-box prediction rather than the black-box model itself.
Tsuyoshi Idé, Naoki Abe
KDD2
2023 Regularized multi-trait multi-locus linear mixed models for genome-wide association studies and genomic selection in crops
abstract
BACKGROUND: We consider two key problems in genomics involving multiple traits: multi-trait genome wide association studies (GWAS), where the goal is to detect genetic variants associated with the traits; and multi-trait genomic selection (GS), where the emphasis is on accurately predicting trait values. Multi-trait linear mixed models build on the linear mixed model to jointly model multiple traits. Existing estimation methods, however, are limited to the joint analysis of a small number of genotypes; in fact, most approaches consider one SNP at a time. Estimating multi-dimensional genetic and environment effects also results in considerable computational burden. Efficient approaches that incorporate regularization into multi-trait linear models (no random effects) have been recently proposed to identify genomic loci associated with multiple traits (Yu et al. in Multitask learning using task clustering with applications to predictive modeling and GWAS of plant varieties. arXiv:1710.01788 , 2017; Yu et al in Front Big Data 2:27, 2019), but these ignore population structure and familial relatedness (Yu et al in Nat Genet 38:203-208, 2006). RESULTS: This work addresses this gap by proposing a novel class of regularized multi-trait linear mixed models along with scalable approaches for estimation in the presence of high-dimensional genotypes and a large number of traits. We evaluate the effectiveness of the proposed methods using datasets in maize and sorghum diversity panels, and demonstrate benefits in both achieving high prediction accuracy in GS and in identifying relevant marker-trait associations. CONCLUSIONS: The proposed regularized multivariate linear mixed models are relevant for both GWAS and GS. We hope that they will facilitate agronomy-related research in plant biology and crop breeding endeavors.
Aurélie C. Lozano, Hantian Ding, Naoki Abe, Alexander E. Lipka
BMC Bioinform.3
2022 Directed Graph Auto-Encoders
abstract
We introduce a new class of auto-encoders for directed graphs, motivated by a direct extension of the Weisfeiler-Leman algorithm to pairs of node labels. The proposed model learns pairs of interpretable latent representations for the nodes of directed graphs, and uses parameterized graph convolutional network (GCN) layers for its encoder and an asymmetric inner product decoder. Parameters in the encoder control the weighting of representations exchanged between neighboring nodes. We demonstrate the ability of the proposed model to learn meaningful latent embeddings and achieve superior performance on the directed link prediction task on several popular network datasets.
Georgios Kollias, Vasileios Kalantzis, Tsuyoshi Idé, Aurélie C. Lozano, Naoki Abe
AAAI5
2022 A fault injection platform for learning AIOps models
abstract
In today’s IT environment with a growing number of costly outages, increasing complexity of the systems, and availability of massive operational data, there is a strengthening demand to effectively leverage Artificial Intelligence and Machine Learning (AI/ML) towards enhanced resiliency. In this paper, we present an automatic fault injection platform to enable and optimize the generation of data needed for building AI/ML models to support modern IT operations. The merits of our platform include the ease of use, the possibility to orchestrate complex fault scenarios and to optimize the data generation for the modeling task at hand. Specifically, we designed a fault injection service that (i) combines fault injection with data collection in a unified framework, (ii) supports hybrid and multi-cloud environments, and (iii) does not require programming skills for its use. Our current implementation covers the most common fault types both at the application and infrastructure levels. The platform also includes some AI capabilities. In particular, we demonstrate the interventional causal learning capability currently available in our platform. We show how our system is able to learn a model of error propagation in a micro-service application in a cloud environment (when the communication graph among micro-services is unknown and only logs are available) for use in subsequent applications such as fault localization.
Frank Bagehorn, Jesus Rios, Saurabh Jha, Robert Filepp, Larisa Shwartz, Naoki Abe
ASE6
2022 Fragile Earth: AI for Climate Mitigation, Adaptation, and Environmental Justice
abstract
The Fragile EarthWorkshop is a recurring event that gathers the research community to find and explore howdata science can measure and progress climate and social issues, following the framework of the United Nations Sustainable Development Goals (SDGs).
Naoki Abe, Kathleen Buckingham, Bistra Dilkina, Emre Eftelioglu, Auroop R. Ganguly, James Hodson 0003, Ramakrishnan Kannan, Rose Yu
KDD1
2021 Anomaly Attribution with Likelihood Compensation
abstract
This paper addresses the task of explaining anomalous predictions of a black-box regression model. When using a black-box model, such as one to predict building energy consumption from many sensor measurements, we often have a situation where some observed samples may significantly deviate from their prediction. It may be due to a sub-optimal black-box model, or simply because those samples are outliers. In either case, one would ideally want to compute a responsibility score indicative of the extent to which an input variable is responsible for the anomalous output. In this work, we formalize this task as a statistical inverse problem: Given model deviation from the expected value, infer the responsibility score of each of the input variables. We propose a new method called likelihood compensation (LC), which is founded on the likelihood principle and computes a correction to each input variable. To the best of our knowledge, this is the first principled framework that computes a responsibility score for real valued anomalous model deviations. We apply our approach to a real-world building energy prediction task and confirm its utility based on expert feedback.
Tsuyoshi Idé, Amit Dhurandhar, Jirí Navrátil 0001, Moninder Singh, Naoki Abe
AAAI5
2021 Fragile Earth: Accelerating Progress towards Equitable Sustainability
abstract
Fragile Earth 2021, our annual workshop is taking place as part of the Earth Day events at ACM's KDD 2021 Conference on research in Machine Learning and its applications. The 5th edition of Fragile Earth will bring together the research community, industry, and policymakers to develop radically new technological foundations for advancing and meeting the Sustainable Development Goals in a way that ensures equitable and inclusive progress.
Naoki Abe, Kathleen Buckingham, Bistra Dilkina, Emre Eftelioglu, Auroop R. Ganguly, James Hodson 0003, Ramakrishnan Kannan
KDD1
2021 Cardinality-Regularized Hawkes-Granger Model
abstract
We propose a new sparse Granger-causal learning framework for temporal event data. We focus on a specific class of point processes called the Hawkes process. We begin by pointing out that most of the existing sparse causal learning algorithms for the Hawkes process suffer from a singularity in maximum likelihood estimation. As a result, their sparse solutions can appear only as numerical artifacts. In this paper, we propose a mathematically well-defined sparse causal learning framework based on a cardinality-regularized Hawkes process, which remedies the pathological issues of existing approaches. We leverage the proposed algorithm for the task of instance-wise causal event analysis, where sparsity plays a critical role. We validate the proposed framework with two real use-cases, one from the power grid and the other from the cloud data center management domain.
Tsuyoshi Idé, Georgios Kollias, Dzung T. Phan, Naoki Abe
NeurIPS4
2018 Detecting and Counting Panicles in Sorghum Images
abstract
Phenotyping, the process of measuring plant traits, plays a central role in plant breeding. However, traditional approaches are labor-intensive, time-consuming, costly, and error prone. Accurate, automated, high-throughput phenotyping can relieve a huge burden in the breeding pipeline. In this paper, we propose computer vision systems and approaches to annotate, detect, and count panicles (heads), a key phenotype, from aerial images of Sorghum crops. The annotation system allows the users to label panicles in Sorghum aerial images. This annotated data is used for learning by the panicle detection and counting algorithms. The proposed approaches were used with aerial imagery of 18 varieties of Sorghum crop collected at 6 different dates in the Midwestern United States. The detector has an AUC of over 0.98 and the counter has a mean absolute error of 2.66 without adapting to variety and 1.88 when using variety specific information. Our approaches are being adopted into a high-throughput phenotyping pipeline for accelerating Sorghum breeding.
Peder A. Olsen, Karthikeyan Natesan Ramamurthy, Javier Ribera, Yuhao Chen 0001, Addie M. Thompson, Ronny Luss, Mitchell R. Tuinstra, Naoki Abe
DSAA8
2013 Collective Response Spike Prediction for Mutually Interacting Consumers
abstract
Modeling how marketing actions in various channels influence or cause consumer purchase decisions is crucial for marketing decision-making. Marketing campaigns stimulate consumer awareness, interest and help drive interactions such as the browsing of product web pages, ultimately impacting an individual's purchase decision. In addition, some successful campaigns stimulate word-of-mouth and social trends among consumers, and such collective behavior of consumers result in concurrent and correlated responses over a short term. Though each consumer's response should be attributed with both the same individual's experiences and the collective factors, unobservability of most word-of-mouth events makes the estimation challenging. The authors propose a new continuous-time predictive model for time-dependent response rates of each consumer, which can incorporate both the individual and the collective factors without explicit word-of-mouth observations. The individual factor is modeled as staircase functions associated with the experienced events by each consumer, and provides a clear psychological interpretation about how marketing advertising communications impact short-term and mid-term memories of consumers. The collective factor is modeled with aggregate response frequencies for mutually-interacting groups that are automatically estimated from data. The key idea to mine the mutually-interacting groups exists in a three-step estimator, which initially performs a Poisson regression without the collective factor, then does clustering of the residual time-series in the initial regression, and finally performs another Poisson regression involving the collective factor. The proposed collective factor robustly incorporates the underlying trends even when causality from one consumer's event spikes to another consumer's response is weak. High predictive accuracy of the proposed approach is empirically validated using real-world data provided by an online retailer in Europe.
Rikiya Takahashi, Hideyuki Mizuta, Naoki Abe, Ruby L. Kennedy, Vincent J. Jeffs, Ravi Shah, Robert H. Crites
ICDM3
2010 Optimizing debt collections using constrained reinforcement learning
abstract
The problem of optimally managing the collections process by taxation authorities is one of prime importance, not only for the revenue it brings but also as a means to administer a fair taxing system. The analogous problem of debt collections management in the private sector, such as banks and credit card companies, is also increasingly gaining attention. With the recent successes in the applications of data analytics and optimization to various business areas, the question arises to what extent such collections processes can be improved by use of leading edge data modeling and optimization techniques. In this paper, we propose and develop a novel approach to this problem based on the framework of constrained Markov Decision Process (MDP), and report on our experience in an actual deployment of a tax collections optimization system at New York State Department of Taxation and Finance (NYS DTF).
Naoki Abe, Prem Melville, Cezar Pendus, Chandan K. Reddy, David L. Jensen, Vince P. Thomas, James J. Bennett, Gary F. Anderson, Brent R. Cooley, Melissa Kowalczyk, Mark Domick, Timothy Gardinier
KDD1
2009 Grouped graphical Granger modeling methods for temporal causal modeling
abstract
We develop and evaluate an approach to causal modeling based on time series data, collectively referred to as "grouped graphical Granger modeling methods." Graphical Granger modeling uses graphical modeling techniques on time series data and invokes the notion of "Granger causality" to make assertions on causality among a potentially large number of time series variables through inference on time-lagged effects. The present paper proposes a novel enhancement to the graphical Granger methodology by developing and applying families of regression methods that are sensitive to group information among variables, to leverage the group structure present in the lagged temporal variables according to the time series they belong to. Additionally, we propose a new family of algorithms we call group boosting, as an improved component of grouped graphical Granger modeling over the existing regression methods with grouped variable selection in the literature (e.g group Lasso). The introduction of group boosting methods is primarily motivated by the need to deal with non-linearity in the data. We perform empirical evaluation to confirm the advantage of the grouped graphical Granger methods over the standard (non-grouped) methods, as well as that specific to the methods based on group boosting. This advantage is also demonstrated for the real world application of gene regulatory network discovery from time-course microarray data.
Aurélie C. Lozano, Naoki Abe, Yan Liu 0002, Saharon Rosset
KDD2
2009 Spatial-temporal causal modeling for climate change attribution
abstract
Attribution of climate change to causal factors has been based predominantly on simulations using physical climate models, which have inherent limitations in describing such a complex and chaotic system. We propose an alternative, data centric, approach that relies on actual measurements of climate observations and human and natural forcing factors. Specifically, we develop a novel method to infer causality from spatial-temporal data, as well as a procedure to incorporate extreme value modeling into our method in order to address the attribution of extreme climate events, such as heatwaves. Our experimental results on a real world dataset indicate that changes in temperature are not solely accounted for by solar radiance, but attributed more significantly to CO2 and other greenhouse gases. Combined with extreme value modeling, we also show that there has been a significant increase in the intensity of extreme temperatures, and that such changes in extreme temperature are also attributable to greenhouse gases. These preliminary results suggest that our approach can offer a useful alternative to the simulation-based approach to climate modeling and attribution, and provide valuable insights from a fresh perspective.
Aurélie C. Lozano, Alexandru Niculescu-Mizil, Yan Liu 0002, Claudia Perlich, Jonathan R. M. Hosking, Naoki Abe
KDD7
2009 Grouped Orthogonal Matching Pursuit for Variable Selection and Prediction
abstract
We consider the problem of variable group selection for least squares regression, namely, that of selecting groups of variables for best regression performance, leveraging and adhering to a natural grouping structure within the explanatory variables. We show that this problem can be efficiently addressed by using a certain greedy style algorithm. More precisely, we propose the Group Orthogonal Matching Pursuit algorithm (Group-OMP), which extends the standard OMP procedure (also referred to as ``forward greedy feature selection algorithm for least squares regression) to perform stage-wise group variable selection. We prove that under certain conditions Group-OMP can identify the correct (groups of) variables. We also provide an upperbound on the $l_\infty$ norm of the difference between the estimated regression coefficients and the true coefficients. Experimental results on simulated and real world datasets indicate that Group-OMP compares favorably to Group Lasso, OMP and Lasso, both in terms of variable selection and prediction accuracy.
Aurélie C. Lozano, Grzegorz Swirszcz, Naoki Abe
NIPS3
2009 Proximity-Based Anomaly Detection Using Sparse Structure Learning
abstract
We consider the task of performing anomaly detection in highly noisy multivariate data. In many applications involving real-valued time-series data, such as physical sensor data and economic metrics, discovering changes and anomalies in the way variables depend on one another is of particular importance. Our goal is to robustly compute the “correlation anomaly” score of each variable by comparing the test data with reference data, even when some of the variables are highly correlated (and thus collinearity exists). To remove seeming dependencies introduced by noise, we focus on the most significant dependencies for each variable. We perform this “neighborhood selection” in an adaptive manner by fitting a sparse graphical Gaussian model. Instead of traditional covariance selection procedures, we solve this problem as maximum likelihood estimation of the precision matrix (inverse covariance matrix) under the L1 penalty. Then the anomaly score for each variable is computed by evaluating the distances between the fitted conditional distributions within the Markov blanket for that variable, for the (two) data sets to be compared. Using real-world data, we demonstrate that our matrix-based sparse structure learning approach successfully detects correlation anomalies under collinearities and heavy noise.
Tsuyoshi Idé, Aurélie C. Lozano, Naoki Abe, Yan Liu 0002
SDM3
2009 Grouped graphical Granger modeling for gene expression regulatory networks discovery
abstract
We consider the problem of discovering gene regulatory networks from time-series microarray data. Recently, graphical Granger modeling has gained considerable attention as a promising direction for addressing this problem. These methods apply graphical modeling methods on time-series data and invoke the notion of 'Granger causality' to make assertions on causality through inference on time-lagged effects. Existing algorithms, however, have neglected an important aspect of the problem--the group structure among the lagged temporal variables naturally imposed by the time series they belong to. Specifically, existing methods in computational biology share this shortcoming, as well as additional computational limitations, prohibiting their effective applications to the large datasets including a large number of genes and many data points. In the present article, we propose a novel methodology which we term 'grouped graphical Granger modeling method', which overcomes the limitations mentioned above by applying a regression method suited for high-dimensional and large data, and by leveraging the group structure among the lagged temporal variables according to the time series they belong to. We demonstrate the effectiveness of the proposed methodology on both simulated and actual gene expression data, specifically the human cancer cell (HeLa S3) cycle data. The simulation results show that the proposed methodology generally exhibits higher accuracy in recovering the underlying causal structure. Those on the gene expression data demonstrate that it leads to improved accuracy with respect to prediction of known links, and also uncovers additional causal relationships uncaptured by earlier works.
Aurélie C. Lozano, Naoki Abe, Yan Liu 0002, Saharon Rosset
Bioinform.2
2008 Multi-class cost-sensitive boosting with p-norm loss functions
abstract
We propose a family of novel cost-sensitive boosting methods for multi-class classification by applying the theory of gradient boosting to p-norm based cost functionals. We establish theoretical guarantees including proof of convergence and convergence rates for the proposed methods. Our theoretical treatment provides interpretations for some of the existing algorithms in terms of the proposed family, including a generalization of the costing algorithm, DSE and GBSE-t, and the Average Cost method. We also experimentally evaluate the performance of our new algorithms against existing methods of cost sensitive boosting, including AdaCost, CSB2, and AdaBoost.M2 with cost-sensitive weight initialization. We show that our proposed scheme generally achieves superior results in terms of cost minimization and, with the use of higher order p-norm loss in certain cases, consistently outperforms the comparison methods, thus establishing its empirical advantage.
Aurélie C. Lozano, Naoki Abe
KDD2
2007 Temporal causal modeling with graphical granger methods
abstract
The need for mining causality, beyond mere statistical correlations, for real world problems has been recognized widely. Many of these applications naturally involve temporal data, which raises the challenge of how best to leverage the temporal information for causal modeling. Recently graphical modeling with the concept of “Granger causality”, based on the intuition that a cause helps predict its effects in the future, has gained attention in many domains involving time series data analysis. With the surge of interest in model selection methodologies for regression, such as the Lasso, as practical alternatives to solving structural learning of graphical models, the question arises whether and how to combine these two notions into a practically viable approach for temporal causal modeling. In this paper, we examine a host of related
Andrew Arnold, Yan Liu 0002, Naoki Abe
KDD3
2006 Using secure coprocessors for privacy preserving collaborative data mining and analysis
abstract
Secure coprocessors have traditionally been used as a keystone of a security subsystem, eliminating the need to protect the rest of the subsystem with physical security measures. With technological advances and hardware miniaturization they have become increasingly powerful. This opens up the possibility of using them for non traditional use. This paper describes a solution for privacy preserving data sharing and mining using cryptographically secure but resource limited coprocessors. It uses memory light data mining methodologies along with a light weight database engine with federation capability, running on a coprocessor. The data to be shared resides with the enterprises that want to collaborate. This system will allow multiple enterprises, which are generally not allowed to share data, to do so solely for the purpose of detecting particular types of anomalies and for generating alerts. We also present results from experiments which demonstrate the value of such collaborations.
Bishwaranjan Bhattacharjee, Naoki Abe, Kenneth A. Goldman, Bianca Zadrozny, Vamsavardhana R. Chillakuru, Marysabel del Carpio, Chidanand Apté
DaMoN2
2006 A Parameterized Probabilistic Model of Network Evolution for Supervised Link Prediction
abstract
We introduce a new approach to the problem of link prediction for network structured domains, such as the Web, social networks, and biological networks. Our approach is based on the topological features of network structures, not on the node features. We present a novel parameterized probabilistic model of network evolution and derive an efficient incremental learning algorithm for such models, which is then used to predict links among the nodes. We show some promising experimental results using biological network data sets.
Hisashi Kashima, Naoki Abe
ICDM2
2006 Outlier detection by active learning
abstract
Most existing approaches to outlier detection are based on density estimation methods. There are two notable issues with these methods: one is the lack of explanation for outlier flagging decisions, and the other is the relatively high computational requirement. In this paper, we present a novel approach to outlier detection based on classification, in an attempt to address both of these issues. Our approach isbased on two key ideas. First, we present a simple reduction of outlier detection to classification, via a procedure that involves applying classification to a labeled data set containing artificially generated examples that play the role of potential outliers. Once the task has been reduced to classification, we then invoke a selective sampling mechanism based on active learning to the reduced classification problem. We empirically evaluate the proposed approach using a number of data sets, and find that our method is superior to other methods based on the same reduction to classification, but using standard classification methods. We also show that it is competitive to the state-of-the-art outlier detection methods in the literature based on density estimation, while significantly improving the computational complexity and explanatory power.
Naoki Abe, Bianca Zadrozny, John Langford 0001
KDD1
2004 Cross channel optimized marketing by reinforcement learning
abstract
The issues of cross channel integration and customer life time value modeling are two of the most important topics surrounding customer relationship management (CRM) today. In the present paper, we describe and evaluate a novel solution that treats these two important issues in a unified framework of Markov Decision Processes (MDP). In particular, we report on the results of a joint project between IBM Research and Saks Fifth Avenue to investigate the applicability of this technology to real world problems. The business problem we use as a testbed for our evaluation is that of optimizing direct mail campaign mailings for maximization of profits in the store channel. We identify a problem common to cross-channel CRM, which we call the Cross-Channel Challenge, due to the lack of explicit linking between the marketing actions taken in one channel and the customer responses obtained in another. We provide a solution for this problem based on old and new techniques in reinforcement learning. Our in-laboratory experimental evaluation using actual customer interaction data show that as much as 7 to 8 per cent increase in the store profits can be expected, by employing a mailing policy automatically generated by our methodology. These results confirm that our approach is valid in dealing with the cross channel CRM scenarios in the real world.
Naoki Abe, Naval K. Verma, Chidanand Apté, Robert Schroko
KDD1
2004 An iterative method for multi-class cost-sensitive learning
abstract
Cost-sensitive learning addresses the issue of classification in the presence of varying costs associated with different types of misclassification. In this paper, we present a method for solving multi-class cost-sensitive learning problems using any binary classification algorithm. This algorithm is derived using hree key ideas: 1) iterative weighting; 2) expanding data space; and 3) gradient boosting with stochastic ensembles. We establish some theoretical guarantees concerning the performance of this method. In particular, we show that a certain variant possesses the boosting property, given a form of weak learning assumption on the component binary classifier. We also empirically evaluate the performance of the proposed method using benchmark data sets and verify that our method generally achieves better results than representative methods for cost-sensitive learning, in terms of predictive performance (cost minimization) and, in many cases, computational efficiency.
Naoki Abe, Bianca Zadrozny, John Langford 0001
KDD1
2004 Foreword
Naoki Abe, Roni Khardon
Theor. Comput. Sci.1
2003 Cost-Sensitive Learning by Cost-Proportionate Example Weighting
abstract
We propose and evaluate a family of methods for converting classifier learning algorithms and classification theory into cost-sensitive algorithms and theory. The proposed conversion is based on cost-proportionate weighting of the training examples, which can be realized either by feeding the weights to the classification algorithm (as often done in boosting), or by careful subsampling. We give some theoretical performance guarantees on the proposed methods, as well as empirical evidence that they are practical alternatives to existing approaches. In particular, we propose costing, a method based on cost-proportionate rejection sampling and ensemble aggregation, which achieves excellent predictive performance on two publicly available datasets, while drastically reducing the computation required by other methods.
Bianca Zadrozny, John Langford 0001, Naoki Abe
ICDM3
2003 Reinforcement Learning with Immediate Rewards and Linear Hypotheses
Naoki Abe, Alan W. Biermann, Philip M. Long
Algorithmica1
2002 Empirical Comparison of Various Reinforcement Learning Strategies for Sequential Targeted Marketing
abstract
We empirically evaluate the performance of various reinforcement learning methods in applications to sequential targeted marketing. In particular we propose and evaluate a progression of reinforcement learning methods, ranging from the "direct" or "batch" methods to "indirect" or "simulation based" methods, and those that we call "semidirect" methods that fall between them. We conduct a number of controlled experiments to evaluate the performance of these competing methods. Our results indicate that while the indirect methods can perform better in a situation in which nearly perfect modeling is possible, under the more realistic situations in which the system's modeling parameters have restricted attention, the indirect methods' performance tend to degrade. We also show that semi-direct methods are effective in reducing the amount of computation necessary to attain a given level of performance, and often result in more profitable policies.
Naoki Abe, Edwin P. D. Pednault, Haixun Wang, Bianca Zadrozny, Wei Fan 0001, Chidanand Apté
ICDM1
2002 Sequential cost-sensitive decision making with reinforcement learning
abstract
Recently, there has been increasing interest in the issues of cost-sensitive learning and decision making in a variety of applications of data mining. A number of approaches have been developed that are effective at optimizing cost-sensitive decisions when each decision is considered in isolation. However, the issue of sequential decision making, with the goal of maximizing total benefits accrued over a period of time instead of immediate benefits, has rarely been addressed. In the present paper, we propose a novel approach to sequential decision making based on the reinforcement learning framework. Our approach attempts to learn decision rules that optimize a sequence of cost-sensitive decisions so as to maximize the total benefits accrued over time. We use the domain of targeted' marketing as a testbed for empirical evaluation of the proposed method. We conducted experiments using approximately two years of monthly promotion data derived from the well-known KDD Cup 1998 donation data set. The experimental results show that the proposed method for optimizing total accrued benefits out performs the usual targeted-marketing methodology of optimizing each promotion in isolation. We also analyze the behavior of the targeting rules that were obtained and discuss their appropriateness to the application domain.
Edwin P. D. Pednault, Naoki Abe, Bianca Zadrozny
KDD2
2002 Online Learning of Binary and n-ary Relations over Clustered Domains
Atsuyoshi Nakamura, Naoki Abe
J. Comput. Syst. Sci.2
2001 Editors' Introduction
Naoki Abe, Roni Khardon, Thomas Zeugmann
ALT1
2000 Efficient Mining from Large Databases by Query Learning
Hiroshi Mamitsuka, Naoki Abe
ICML2
2000 Automatic recording agent for digital video server
abstract
We propose and evaluate the performance of a number of methods for automatic recording of TV programs for digital video servers, which estimate the user's preference over TV programs based on her/his past viewing behavior and automatically record a selected number of TV programs believed to be of interest to the user. Our methods combine the so-called content-based filtering and social (or collaborative) filtering methods and are based on a certain class of on-line learning algorithms known as the `specialist' algorithms, recently developed in the field of computational learning theory. We empirically evaluated the performance of content-based part of the proposed methods using preference data on TV programs consisting of scores given by people on actual TV programs. The results are largely encouraging and indicate in particular that our methods are practical in terms of both the precision in predicting the user's preference and computational complexity.
Atsuyoshi Nakamura, Naoki Abe, Hiroshi Matoba, Katsuhiro Ochiai
ACM Multimedia2
2000 A Web marketing system with automatic pricing
Naoki Abe, Tomonari Kamba
Comput. Networks1
2000 The Lob-Pass Problem
Jun'ichi Takeuchi, Naoki Abe, Shun-ichi Amari
J. Comput. Syst. Sci.2
1999 Associative Reinforcement Learning using Linear Probabilistic Concepts
Naoki Abe, Philip M. Long
ICML1
1999 Learning to Optimally Schedule Internet Banner Advertisements
Naoki Abe, Atsuyoshi Nakamura
ICML1
1999 Unintrusive Customization Techniques for Web Advertising
Marc Langheinrich, Atsuyoshi Nakamura, Naoki Abe, Tomonari Kamba, Yoshiyuki Koseki
Comput. Networks3
1999 Learning Dependencies between Case Frame Slots
Hang Li 0011, Naoki Abe
Comput. Linguistics2
1998 Empirical Comparison of Competing Query Learning Methods
Naoki Abe, Hiroshi Mamitsuka, Atsuyoshi Nakamura
Discovery Science1
1998 Query Learning Strategies Using Boosting and Bagging
Naoki Abe, Hiroshi Mamitsuka
ICML1
1998 Collaborative Filtering Using Weighted Majority Prediction Algorithms
Atsuyoshi Nakamura, Naoki Abe
ICML2
1998 Generalizing Case Frames Using a Thesaurus and the MDL Principle
Hang Li 0011, Naoki Abe
Comput. Linguistics2
1997 Predicting Protein Secondary Structure Using Stochastic Tree Grammars
Naoki Abe, Hiroshi Mamitsuka
Mach. Learn.1
1996 Clustering Words with the MDL Principle
Hang Li 0011, Naoki Abe
COLING2
1996 Learning Dependencies between Case Frame Slots
Hang Li 0011, Naoki Abe
COLING2
1996 Learning Word Association Norms Using Tree Cut Pair Models
Naoki Abe, Hang Li 0011
ICML1
1995 On-line Learning of Binary and n-ary Relations over Multi-dimensional Clusters
abstract
We consider the on-line learning problem for
Atsuyoshi Nakamura, Naoki Abe
COLT2
1995 On-line Learning of Binary Lexical Relations Using Two-dimensional Weighted Majority Algorithms
Naoki Abe, Hang Li 0011, Atsuyoshi Nakamura
ICML1
1995 Characterizing PAC-Learnability of Semilinear Sets
Naoki Abe
Inf. Comput.1
1995 Exact Learning of Linear Combinations of Monotone Terms from Function Value Queries
Atsuyoshi Nakamura, Naoki Abe
Theor. Comput. Sci.2
1994 A New Method for Predicting Protein Secondary Structures Based on Stochastic Tree Grammars
Naoki Abe, Hiroshi Mamitsuka
ICML1
1994 Predicting Location and Structure Of beta-Sheet Regions Using Stochastic Tree Grammars
Hiroshi Mamitsuka, Naoki Abe
ISMB2
1993 The "lob-pass" Problem and an On-line Learning Model of Rational Choice
abstract
We consider an on-line learning model of rational choice, in which the goal of an agent is to choose its actions so as to maximize the number of successes, while learning about its reacting environment through th$e very sctions.In particular, we consider a model of tennis play, in which the only actions that the player can take are a 'pass' and a 'lob,' and the opponent is modeled by two linear (probabilistic) functions ~'(r) = alr + bl and jp(r) = a2r + ~, specifying the probabllit y that a 10b (and a pass, respectively) will win a point when the proportion of lobs in the put trials is r.We measure the performance of a player in this model by its expected regret, namely how many less points it expects to win as compared to the ideal player (one that knows the two probabilistic functions) ss a function oft, the total number of trials.which is unknown to the player a priori.A&urning that the probabilistic functions satisfy the matching shoulder condition, i.e. f~(0) = ~P (l), we obtain a variety of upper bounds for sssmuptions and restrictions of varying degrees, ranging from o(logt),'o(t*), O(t+), O(t:), O(tf) to O(t$) as well as a matching lower bound of order $l(log t) for the most restrictive case.When the total number of trials t is given to the player in advance, the upper bo~nds can be improved sigrdkantly.
Naoki Abe, Jun'ichi Takeuchi
COLT1
1992 On the Computational Complexity of Approximating Distributions by Probabilistic Automata
Naoki Abe, Manfred K. Warmuth
Mach. Learn.1
1988 Polynominal Learnability and Locality of Formal Grammars
abstract
We apply a complexity theoretic notion of feasible learnability called "polynomial learnability" to the evaluation of grammatical formalisms for linguistic description. We show that a novel, nontrivial constraint on the degree of "locality" of grammars allows not only context free languages but also a rich class of mildy context sensitive languages to be polynomially learnable. We discuss possible implications of this result to the theory of natural language acquisition.
Naoki Abe
ACL1
1988 Feasible learnability of formal grammars and the theory of natural language acquisition
Naoki Abe
COLING1