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Brendan Lee

dblp:14/8322 · DBLP profile ↗
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7ranked-venue papers
0as first author
3since 2021 · last 2025
0000-0001-8573-4211ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 4 · 3 since 2021Systems, architecture and hardware · 1Databases, data management, data science and information retrieval · 1Human-computer interaction and ubiquitous computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Computer architecture, parallel and distributed computing, and storage systems
2 papers
Cloud and datacenter computing · 100%
Human-computer interaction and pervasive computing
1 paper
Interaction techniques and input · 87% Wearable and physiological sensing · 13%
Theoretical computer science
1 paper
Computational geometry · 50% Graph algorithms and graph theory · 50%
Interdisciplinary, comprehensive, and emerging computing
1 paper
Medical and health informatics · 100%

Topics — the 9 heaviest of 10, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Cloud and datacenter computing
cluster resource management and scheduling
0.312018
SLAOrchestrator: Reducing the Cost of Performance SLAs for Cloud Data Analytics · USENIX ATC 2018
Cloud and datacenter computing › cluster resource management and scheduling
cluster resource management
0.212016
PerfEnforce Demonstration: Data Analytics with Performance Guarantees · SIGMOD Conference 2016
Interaction techniques and input
cross-device interaction
0.212014
SurfaceLink: using inertial and acoustic sensing to enable multi-device interaction on a surface · CHI 2014
Interaction techniques and input
gesture input
0.212014
SurfaceLink: using inertial and acoustic sensing to enable multi-device interaction on a surface · CHI 2014
Medical and health informatics
medical imaging
0.112010
A soft kinetic data structure for lesion border detection · Bioinform. 2010
Graph algorithms and graph theory
graph spanners
0.112010
A soft kinetic data structure for lesion border detection · Bioinform. 2010
Computational geometry › geometric graph
proximity graphs
0.112010
A soft kinetic data structure for lesion border detection · Bioinform. 2010
Cloud and datacenter computing
cloud data analytics
0.112018
SLAOrchestrator: Reducing the Cost of Performance SLAs for Cloud Data Analytics · USENIX ATC 2018
Wearable and physiological sensing
inertial sensing
0.112014
SurfaceLink: using inertial and acoustic sensing to enable multi-device interaction on a surface · CHI 2014

Methods — techniques the papers use, named apart from their topics

reinforcement learning · 0.2online machine learning · 0.2feedback control · 0.2graph spanner · 0.2inertial sensing · 0.2acoustic sensing · 0.2
YearPublicationVenuePosition
2025 Research for all: building a diverse researcher community for the All of Us Research Program
abstract
OBJECTIVES: The NIH All of Us Research Program (All of Us) is engaging a diverse community of more than 10 000 registered researchers using a robust engagement ecosystem model. We describe strategies used to build an ecosystem that attracts and supports a diverse and inclusive researcher community to use the All of Us dataset and provide metrics on All of Us researcher usage growth. MATERIALS AND METHODS: Researcher audiences and diversity categories were defined to guide a strategy. A researcher engagement strategy was codeveloped with program partners to support a researcher engagement ecosystem. An adapted ecological model guided the ecosystem to address multiple levels of influence to support All of Us data use. Statistics from the All of Us Researcher Workbench demographic survey describe trends in researchers' and institutional use of the Workbench and publication numbers. RESULTS: From 2022 to 2024, some 13 partner organizations and their subawardees conducted outreach, built capacity, or supported researchers and institutions in using the data. Trends indicate that Workbench registrations and use have increased over time, including among researchers underrepresented in the biomedical workforce. Data Use and Registration Agreements from minority-serving institutions also increased. DISCUSSION: All of Us built a diverse, inclusive, and growing research community via intentional engagement with researchers and via partnerships to address systemic data access issues. Future programs will provide additional support to researchers and institutions to ameliorate All of Us data use challenges. CONCLUSION: The approach described helps address structural inequities in the biomedical research field to advance health equity.
Rubin Baskir, Minnkyong Lee, Sydney J. McMaster, Jessica Lee, Faith Blackburne-Proctor, Romuladus Azuine, Nakia Mack, Sheri D. Schully, Martin Mendoza, Janeth Sanchez, Yong Crosby, Erica Zumba, Michael Hahn 0006, Naomi Aspaas, Ahmed Elmi, Shanté Alerté, Elizabeth Stewart, Danielle Wilfong, Meag Doherty, Margaret M. Farrell, Grace B. Hébert, Sula M. Hood, Cheryl M. Thomas, Debra D. Murray, Brendan Lee, Louisa A Stark, Megan A. Lewis, Jennifer D. Uhrig, Laura R. Bartlett, Edgar Gil Rico, Adolph Falcón, Elizabeth Cohn, Mitchell R. Lunn, Juno Obedin-Maliver, Linda Cottler, Milton Eder, Fornessa T. Randal, Jason Karnes, Kitani Lemieux, Nelson Lemieux Jr., Nelson Lemieux III, Lilanta Bradley, Ronnie Tepp, Meredith Wilson, Monica Rodriguez, Chris Lunt, Karriem Watson
J. Am. Medical Informatics Assoc.25
2024 Development and evaluation of a training curriculum to engage researchers on accessing and analyzing the All of Us data
abstract
OBJECTIVE: The All of Us Evenings with Genetics (EwG) Research Program at Baylor College of Medicine (BCM), funded to engage research scholars to work with the All of Us data, developed a training curriculum for the Researcher Workbench, the platform to access and analyze All of Us data. All of Us EwG developed the curriculum so that it could teach scholars regardless of their skills and background in programming languages and cloud computing. All of Us EwG delivered this curriculum at the first annual All of Us EwG Faculty Summit in May 2022. The curriculum was evaluated both during and after the Faculty Summit so that it could be improved for future training. MATERIALS AND METHODS: Surveys were administered to assess scholars' familiarity with the programming languages and computational tools required to use the Researcher Workbench. The curriculum was developed using backward design and was informed by the survey results, a review of available resources for training users on the Researcher Workbench, and All of Us EwG members' collective experience training students. The curriculum was evaluated using feedback surveys during the Faculty Summit as well as virtual meetings and emails following the Faculty Summit. RESULTS: The evaluation results demonstrated the success of the curriculum and identified areas for improvement. DISCUSSION AND CONCLUSION: The curriculum has been adapted and improved in response to evaluations and in response to changes to the All of Us data and infrastructure to train more researchers through this program and other scholarly programs.
Julie R. Coleman, Jasmine N. Baker, Shamika Ketkar, Ashley M. Butler, Laterrica Williams, Latanya Hammonds-Odie, Elizabeth G. Atkinson, Debra D. Murray, Brendan Lee, Kim Worley
J. Am. Medical Informatics Assoc.9
2024 Experiences in providing a community educational resource for the All of Us Researcher Workbench
abstract
OBJECTIVE: Educational offerings to fill the bioinformatics knowledge gap are a key component to enhancing access and use of health data from the All of Us Research Program. We developed a Train the Trainer-based, innovative training series including project-based learning, modular on-demand demonstrations, and unstructured tutorial time as a model for educational engagement in the All of Us community. MATERIALS AND METHODS: We highlight our training modules and content, with training survey data informing cycles of development in the creation of a 6-module training series with modular demonstrations. RESULTS: We have conducted 2 public iterations of the Train the Trainer (Tx3) Series based on survey feedback while training over 300 registered researchers to access and analyze data on the All of Us Researcher Workbench. DISCUSSION AND CONCLUSION: Future directions of the Tx3 Series include enhanced focus on project-based learning and learner requests for modularity and asynchronous materials access.
Deborah I. Ritter, Jinyoung Byun, Stephen Richards, Pamela N. Luna, Laterrica Williams, Julie R. Coleman, Jasmine N. Baker, Shamika Ketkar, Ashley M. Butler, Latanya Hammonds-Odie, Elizabeth G. Atkinson, Kim Worley, Debra D. Murray, Brendan Lee, Steven E. Scherer
J. Am. Medical Informatics Assoc.15
2018 SLAOrchestrator: Reducing the Cost of Performance SLAs for Cloud Data Analytics
Jennifer Ortiz, Brendan Lee, Magdalena Balazinska, Johannes Gehrke, Joseph L. Hellerstein
USENIX ATC2
2016 PerfEnforce Demonstration: Data Analytics with Performance Guarantees
abstract
We demonstrate PerfEnforce, a dynamic scaling engine for analytics services. PerfEnforce automatically scales a cluster of virtual machines in order to minimize costs while probabilistically meeting the query runtime guarantees offered by a performance-oriented service level agreement (SLA). The demonstration will show three families of dynamic scaling algorithms --feedback control, reinforcement learning, and online machine learning--and will enable attendees to change tuning parameters, performance thresholds, and workloads to compare and contrast the algorithms in different settings.
Jennifer Ortiz, Brendan Lee, Magdalena Balazinska
SIGMOD Conference2
2014 SurfaceLink: using inertial and acoustic sensing to enable multi-device interaction on a surface
abstract
We present SurfaceLink, a system where users can make natural surface gestures to control association and information transfer among a set of devices that are placed on a mutually shared surface (e.g., a table). SurfaceLink uses a combination of on-device accelerometers, vibration motors, speakers and microphones (and, optionally, an off-device contact microphone for greater sensitivity) to sense gestures performed on the shared surface. In a controlled evaluation with 10 participants, SurfaceLink detected the presence of devices on the same surface with 97.7% accuracy, their relative arrangement with 89.4% accuracy, and various single- and multi-touch surface gestures with an average accuracy of 90.3%. A usability analysis showed that SurfaceLink has advantages over current multi-device interaction techniques in a number of situations.
Mayank Goel, Brendan Lee, Md Tanvir Islam Aumi, Shwetak N. Patel, Gaetano Borriello, Stacie Hibino, James Begole
CHI2
2010 A soft kinetic data structure for lesion border detection
abstract
MOTIVATION: The medical imaging and image processing techniques, ranging from microscopic to macroscopic, has become one of the main components of diagnostic procedures to assist dermatologists in their medical decision-making processes. Computer-aided segmentation and border detection on dermoscopic images is one of the core components of diagnostic procedures and therapeutic interventions for skin cancer. Automated assessment tools for dermoscopic images have become an important research field mainly because of inter- and intra-observer variations in human interpretations. In this study, a novel approach-graph spanner-for automatic border detection in dermoscopic images is proposed. In this approach, a proximity graph representation of dermoscopic images in order to detect regions and borders in skin lesion is presented. RESULTS: Graph spanner approach is examined on a set of 100 dermoscopic images whose manually drawn borders by a dermatologist are used as the ground truth. Error rates, false positives and false negatives along with true positives and true negatives are quantified by digitally comparing results with manually determined borders from a dermatologist. The results show that the highest precision and recall rates obtained to determine lesion boundaries are 100%. However, accuracy of assessment averages out at 97.72% and borders errors' mean is 2.28% for whole dataset.
Sinan Kockara, Mutlu Mete, Vincent Yip, Brendan Lee, Kemal Aydin
Bioinform.4