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Nicolò Alagna

dblp:426/5630 · DBLP profile ↗
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1ranked-venue papers
0as first author
1since 2021 · last 2024
0009-0006-0804-5774ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%
Human-computer interaction and pervasive computing
1 paper
User interface design and tools · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › sequence analysis
nanopore sequencing
0.812024
Pod5Viewer: a GUI for inspecting raw nanopore sequencing data · Bioinform. 2024
Bioinformatics and computational biology
sequence analysis
0.812024
Pod5Viewer: a GUI for inspecting raw nanopore sequencing data · Bioinform. 2024
User interface design and tools
graphical user interface
0.212024
Pod5Viewer: a GUI for inspecting raw nanopore sequencing data · Bioinform. 2024

Methods — techniques the papers use, named apart from their topics

visualization · 1.5
YearPublicationVenuePosition
2024 Pod5Viewer: a GUI for inspecting raw nanopore sequencing data
abstract
MOTIVATION: Oxford Nanopore Technologies recently adopted the POD5 file format for storing raw nanopore sequencing data. The information stored in these files provides detailed insights into the sequencing features and enhances the understanding of raw nanopore data. However, the process of visualizing the data can be cumbersome, especially for users without programming skills. To address this issue, we developed the pod5Viewer, a GUI application for inspecting POD5 files. RESULTS: The pod5Viewer offers straightforward access to raw sequencing data and associated metadata in POD5 files. It includes functionalities for viewing, plotting, and exporting individual reads. Designed with user-friendliness in mind, the pod5Viewer is easy to install and use, making it suitable for users with all technical backgrounds. AVAILABILITY AND IMPLEMENTATION: The pod5Viewer is available as open source from the pod5Viewer Github repository (https://github.com/dietvin/pod5Viewer).
Vincent Dietrich, Nicolò Alagna, Mark Helm, Susanne Gerber, Tamer Butto
Bioinform.2