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Amnon Amir

dblp:53/7412 · DBLP profile ↗
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4ranked-venue papers
1as first author
0since 2021 · last 2017
0000-0002-0903-6056ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2 · 1 first-authorDatabases, data management, data science and information retrieval · 1Human-computer interaction and ubiquitous computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Computing education · 58% Environmental and earth informatics · 29% Bioinformatics and computational biology · 13%
Theoretical computer science
1 paper
Information theory · 100%
Human-computer interaction and pervasive computing
1 paper
Human-AI interaction · 100%

Topics — the 5 heaviest of 6, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Environmental and earth informatics
citizen science
0.312017
Gut Instinct: Creating Scientific Theories with Online Learners · CHI 2017
Computing education
collaborative learning
0.312017
Gut Instinct: Creating Scientific Theories with Online Learners · CHI 2017
Computing education
e-learning
0.312017
Gut Instinct: Creating Scientific Theories with Online Learners · CHI 2017
Bioinformatics and computational biology
metagenomics
0.112011
Bacterial Community Reconstruction Using Compressed Sensing · RECOMB 2011
Information theory › signal processing
compressed sensing
0.112011
Bacterial Community Reconstruction Using Compressed Sensing · RECOMB 2011

Methods — techniques the papers use, named apart from their topics

between-subjects experiment · 0.6compressed sensing · 0.2
YearPublicationVenuePosition
2017 Gut Instinct: Creating Scientific Theories with Online Learners
abstract
Learners worldwide collectively spend millions of hours per week testing their skills on assignments with known answers. Might some of this time fruitfully be spent posing and exploring novel questions? This paper investigates an approach for learners to contribute scientific ideas. The Gut Instinct system embodies this approach, hosting online learning materials and invites learners to collaboratively brainstorm potential influences on people's microbiome. A between-subjects experiment compared the performance of participants who engaged in just learning, just contributing, or a combination. Participants in the learning condition scored highest on a summative test. Participants in both the contribution and combined conditions generated novel, useful questions; there was not a significant difference between the two. Though participants in the combined condition both learned and contributed, this setting did not exhibit an additive benefit, such as better learning in the combined condition. These results highlight the promise and difficulty of double-bottom-line learning experiences.
Vineet Pandey, Amnon Amir, Justine W. Debelius, Embriette R. Hyde, Rob Knight 0001, Scott R. Klemmer
CHI2
2013 Accurate Profiling of Microbial Communities from Massively Parallel Sequencing Using Convex Optimization
Or Zuk, Amnon Amir, Amit Zeisel, Ohad Shamir, Noam Shental
SPIRE2
2011 Bacterial Community Reconstruction Using Compressed Sensing
Amnon Amir, Or Zuk
RECOMB1
2010 Intensity dependent estimation of noise in microarrays improves detection of differentially expressed genes
abstract
BACKGROUND: In many microarray experiments, analysis is severely hindered by a major difficulty: the small number of samples for which expression data has been measured. When one searches for differentially expressed genes, the small number of samples gives rise to an inaccurate estimation of the experimental noise. This, in turn, leads to loss of statistical power. RESULTS: We show that the measurement noise of genes with similar expression levels (intensity) is identically and independently distributed, and that this (intensity dependent) distribution is approximately normal. Our method can be easily adapted and used to test whether these statement hold for data from any particular microarray experiment. We propose a method that provides an accurate estimation of the intensity-dependent variance of the noise distribution, and demonstrate that using this estimation we can detect differential expression with much better statistical power than that of standard t-test, and can compare the noise levels of different experiments and platforms. CONCLUSIONS: When the number of samples is small, the simple method we propose improves significantly the statistical power in identifying differentially expressed genes.
Amit Zeisel, Amnon Amir, Wolfgang J. Köstler, Eytan Domany
BMC Bioinform.2