Shengli Li 0001

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41ranked-venue papers
0as first author
27since 2021 · last 2026
—ORCID · conflict

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 21 · 11 since 2021Artificial intelligence and machine learning · 14 · 12 since 2021Graphics, computer vision, multimedia, augmented reality and games · 11 · 7 since 2021Systems, architecture and hardware · 4 · 2 since 2021
YearPublicationVenuePosition
2026 Organ-Aware Routing Mixture-of-Retrieval Augmented Generation for Fetal Ultrasound Reporting
abstract
Fetal ultrasound screening is a uniquely complex diagnostic task involving the simultaneous assessment of multiple fetal organs—each with its own anatomical and clinical context—within a single examination. Automating report generation for such cases poses a significant challenge: unlike existing methods that focus on single-organ radiology tasks (e.g., chest X-rays), fetal ultrasound requires reasoning over a structured, multiple-to-multiple setting, i.e., multi-organ images corresponding to a multi-section report. In this paper, we introduce FetusR, the first large-scale dataset for multi-organ fetal ultrasound reporting, containing 15,594 real-world cases with rich organ-wise annotations. To address the intrinsic image-report alignment, we propose Organ-Aware Routing Mixture-of-Retrieval Augmented Generation (ORM-RAG) inspired by the Mixture-of-Experts paradigm. Our method decomposes the complex alignment problem into multiple one-to-one sub-retrieval tasks. Specifically, ORM-RAG integrates (1) an organ-aware mixture-of-retrieval module that partitions the retrieval space into organ-specific corpora for independent retrieval, and (2) a dynamic routing mechanism that selectively aggregates high-confidence organ-specific reports while filtering uncertain ones. Extensive experiments demonstrate that our method significantly outperforms state-of-the-art baselines across both textual similarity and clinical accuracy metrics. Our work opens a new direction for long-form, structured report generation in real-world, multi-organ medical imaging scenarios.
Bin Pu, Rongbin Li, Xinpeng Ding, Lei Zhao 0013, Chaoqi Chen, Shengli Li 0001, Kenli Li 0001
AAAI7
2026 Simple is what you need for efficient and accurate medical image segmentation
abstract
While modern segmentation models often prioritize performance over practicality, we advocate for a design philosophy that prioritizes simplicity and efficiency, and strive to design high-performance segmentation models. This paper presents SimpleUNet, a scalable, lightweight medical image segmentation framework. The key is that we proposed a simple yet effective partial feature selection mechanism for reducing information redundancy and thus facilitating compact model design. Additionally, we found that adjusting the model width is a straightforward yet easily overlooked tactic for lightweight model design, thereby preventing exponential parameter growth across network stages. By integrating an almost parameter-free channel attention module, the performance of the developed models can be improved with minimal overhead. Leveraging these techniques, our record-breaking model SimpleUNet with only 16 KB parameters surpasses LBUNet and other lightweight benchmarks across multiple public datasets. Impressively, the 0.67 MB variant achieves superior efficiency and accuracy, attaining a mean DSC/IoU of 85.76%/75.60% on a curated multi-center breast lesion dataset, surpassing both U-Net and TransUNet. Evaluations on skin lesion datasets (ISIC 2017/2018: mDice 84.86%/88.77%) and endoscopic polyp segmentation (KVASIR-SEG: 86.46%/76.48% mDice/mIoU) confirm consistent dominance over state-of-the-art models. Although our current SimpleUNet architecture does not rely on exotic or custom operators, it is fundamentally designed to embrace future innovations. The framework remains fully compatible with emerging operator-level advancements, allowing effortless integration and seamless upgrades without structural modifications. Codes can be found at https://github.com/Frankyu5666666/SimpleUNet .
Yayan Chen, Guannan He, Qing Zeng 0005, Meiling Liang, Dandan Luo, Yimei Liao, Cheng Kang, Delong Yang, Bocheng Liang, Bin Pu, Shengli Li 0001
Expert Syst. Appl.14
2026 ToMo-UDA++: Unsupervised Domain Adaptation for Anatomical Structure Detection Using Enhanced Topology and Morphology Knowledge
Bin Pu, Jiewen Yang, Xingguo Lv, Xingbo Dong, Lei Zhao 0013, Shengli Li 0001, Kenli Li 0001, Xiaomeng Li 0001
Int. J. Comput. Vis.6
2026 Structure-aware fine-grained instance segmentation for fetal brain ultrasound images
Laifa Ma, Kenli Li 0001, Guanghua Tan, Huaxuan Wen, Shengli Li 0001
Neurocomputing6
2026 Automated Screening Network for Fetal Closed Spina Bifida With Semantic Enhancement and Projected Attention
abstract
Closed spina bifida is a high-incidence developmental disorder among rare fetal diseases. Its signs in ultrasound imaging are subtle, making it prone to misdiagnosis and heavily reliant on sonographers' experience. Therefore, we propose a novel semantic enhancement framework incorporating projected attention for the automated screening of closed spina bifida through precise landmark detection. In this method, we utilize a multi-granularity deep supervision and voting mechanism to generate point-specific features and reconstruct saliency maps for each landmark, effectively reducing interference from homogeneous high-echogenic noise in ultrasound images while preserving rich semantic information. Additionally, a coordinate attention projection module is designed to convert the 2D landmark probability maps into one-dimensional vectors, ensuring low computational complexity along with precise coordinate regression. The clinical application potential of this intelligent system is significant, as it facilitates automated fetal spine counting and anatomical measurement, enabling early warnings of diseases based on identified anomalies. Extensive experiments comparing our method with advanced baselines on an in-house dataset and two public datasets demonstrate its clear advantage in computational complexity and accuracy.
Yan Ding 0004, Ningbo Zhu, Chunlian Wang, Shengli Li 0001, Kenli Li 0001
IEEE J. Biomed. Health Informatics6
2025 Leveraging Anatomical Consistency for Multi-Object Detection in Ultrasound Images via Source-free Unsupervised Domain Adaptation
abstract
Source-free unsupervised domain adaptation aims to eliminate domain shifts when data from the source domain and annotation from the target domain are not available. The multi-object detection tasks in medical image analysis are constrained by patient privacy and extremely huge annotation consumption. Hence, Source-free UDA is considered a more practical approach for eliminating the domain gap. However, relevant research that explores this topic is a dearth. In this paper, we design an Anatomy-aware Alignment Teacher-Student learning method using topological consistency based on a mean-teacher framework for Source-free UDA in multiple medical object detection named AATS, including Unsupervised Structure Refinement (USR) and Graph-aware Morphology Alignment (GMA). To match the student and teacher at the low-level and visual features, we propose the USR via an unsupervised clustering algorithm to group organs in ultrasound images. Based on USR, we obtain a graph with organ relations on the teacher branch. While in the student branch, we acquire visual features to construct graphical space and optimize the model with graph propagation. Finally, to match the student and teacher, GMA is designed to align the teacher and student based on both topology and morphology information that is derived from prior medical knowledge. Four groups of adaptation experiments were conducted on available medical datasets, and the outcomes demonstrate that our approach not only achieves state-of-the-art performance but also provides substantial advantages over existing methods.
Bin Pu, Xingguo Lv, Jiewen Yang, Xingbo Dong, Yiqun Lin, Shengli Li 0001, Kenli Li 0001, Xiaomeng Li 0001
AAAI6
2025 Anatomical Knowledge Mining and Matching for Semi-supervised Medical Multi-structure Detection
abstract
In medical image analysis, detecting multiple structures is crucial for evaluations and diagnosis but is often limited by the lack of high-quality annotations. Semi-supervised object detection emerges as a potent methodology to enhance model performance and generalization by leveraging a vast pool of unlabeled data alongside a minimal set of labeled data. A striking observation is that both unlabelled and labeled medical images contain a priori anatomical knowledge from human screening. In this work, we introduce a novel semi-supervised approach named Semi-akmm for mining and matching anatomical knowledge in ultrasound images. We develop an Adaptive Prior Knowledge Transfer (APKT) module to mine and explore the distribution and knowledge of potential proposal boxes by proposal proportion constraint. Furthermore, within a teacher-student learning framework, we put forward an Anatomical Structure Matching (ASM) module to facilitate co-learning consistent topological prior knowledge between the student and teacher models. To our knowledge, this marks the inception of an efficient semi-supervised medical multi-structure detection model. Our experiments across five publicly available ultrasound datasets demonstrate that Semi-akmm sets a new benchmark in performance with solid results that outperform existing methods.
Bin Pu, Liwen Wang 0002, Jiewen Yang, Xingbo Dong, Benteng Ma, Zhuangzhuang Chen, Lei Zhao 0013, Shengli Li 0001, Kenli Li 0001
AAAI8
2025 Anatomical structures detection using topological constraint knowledge in fetal ultrasound
Juncheng Guo, Guanghua Tan, Bin Pu, Chunlian Wang, Shengli Li 0001, Kenli Li 0001
Neurocomputing7
2025 TKR-FSOD: Fetal Anatomical Structure Few-Shot Detection Utilizing Topological Knowledge Reasoning
abstract
Fetal multi-anatomical structure detection in ultrasound (US) images can clearly present the relationship and influence between anatomical structures, providing more comprehensive information about fetal organ structures and assisting sonographers in making more accurate diagnoses, widely used in structure evaluation. Recently, deep learning methods have shown superior performance in detecting various anatomical structures in ultrasound images, but still have the potential for performance improvement in categories where it is difficult to obtain samples, such as rare diseases. Few-shot learning has attracted a lot of attention in medical image analysis due to its ability to solve the problem of data scarcity. However, existing few-shot learning research in medical image analysis focuses on classification and segmentation, and the research on object detection has been neglected. In this paper, we propose a novel fetal anatomical structure few-shot detection method in ultrasound images, TKR-FSOD, which learns topological knowledge through a Topological Knowledge Reasoning Module to help the model reason about and detect anatomical structures. Furthermore, we propose a Discriminate Ability Enhanced Feature Learning Module that extracts abundant discriminative features to enhance the model's discriminative ability. Experimental results demonstrate that our method outperforms the state-of-the-art baseline methods, exceeding the second-best method with a maximum margin of 4.8% on 5-shot of split 1 under four-chamber cardiac view.
Bocheng Liang, Bin Pu, Jiewen Yang, Lei Zhao 0013, Yanqing Kong, Lixian Yang, Rentie Zhang, Hao Li 0021, Shengli Li 0001
IEEE J. Biomed. Health Informatics11
2025 Optical Flow-Enhanced Mamba U-Net for Cardiac Phase Detection in Ultrasound Videos
abstract
The detection of cardiac phase in ultrasound videos, identifying end-systolic (ES) and end-diastolic (ED) frames, is a critical step in assessing cardiac function, monitoring structural changes, and diagnosing congenital heart disease. Current popular methods use recurrent neural networks to track dependencies over long sequences for cardiac phase detection, but often overlook the short-term motion of cardiac valves that sonographers rely on. In this paper, we propose a novel optical flow-enhanced Mamba U-net framework, designed to utilize both short-term motion and long-term dependencies to detect the cardiac phase in ultrasound videos. We utilize optical flow to capture the short-term motion of cardiac muscles and valves between adjacent frames, enhancing the input video. The Mamba layer is employed to track long-term dependencies across cardiac cycles. We then develop regression branches using the U-Net architecture, which integrates short-term and long-term information while extracting multi-scale features. Using this method, we can generate regression scores for each frame and identify keyframes (i.e., ES and ED frames). Additionally, we design a keyframe weighted loss function to guide the network to focus more on keyframes rather than intermediate period frames. Our method demonstrates superior performance compared to advanced baseline methods, achieving frame mismatches of 1.465 frames for ES and 0.842 frames for ED in the Fetal Echocardiogram dataset, where heart rates are higher and phase changes occur rapidly, and 2.444 frames and 2.072 frames in the publicly available adult Echonet-Dynamic dataset. Its accuracy and robustness in both fetal and adult datasets highlight its potential for clinical application.
Yuhuan Lu 0002, Guanghua Tan, Bin Pu, Pak-Hei Yeung, Shengli Li 0001, Jagath C. Rajapakse, Kenli Li 0001
IEEE Trans. Medical Imaging6
2024 Advancing Ultrasound Medical Continuous Learning with Task-Specific Generalization and Adaptability
abstract
As artificial intelligence progresses in the field of medical ultrasound image analysis, mitigating catastrophic forgetting during continuous learning processes in disease diagnosis and fetal ultrasound assistance is crucial. Inspired by the significant performance improvements achieved in various downstream visual tasks through advanced visual representations, we introduce a novel approach called Masked Ultrasound Image Modeling (MUIM) to prevent forgetting of new disease diagnosis tasks. In this approach, MUIM initially pre-trains on ultrasound images specific to the current task. By utilizing a masked autoencoder to train on unlabeled ultrasound images, it learns highly abstract representations of task-relevant information. To ensure the model’s adaptability to new tasks, we propose contrastive Historical-Current Learning strategy, which enhances the model’s ability to retain and integrate knowledge from previous tasks while learning new ones. By incorporating knowledge distillation loss and the exponential moving average (EMA) technique for joint inference and continuously updating new knowledge into the historical expert model, our approach enables the model to adaptively learn new tasks while preventing forgetting of old ones. We conducted extensive experiments on three datasets: the Breast Ultrasound Image dataset (BUSI), the Algeria Thyroid Ultrasound Image dataset (AUITD), and our designed Obstetrics and Gynecology Ultrasound Dataset (USOGD). The results demonstrate that our method significantly reduces the forgetting of old task knowledge while outperforming state-of-the-art methods in classification accuracy.
Chunzheng Zhu, Guanghua Tan, Ningbo Zhu, Kenli Li 0001, Chunlian Wang, Shengli Li 0001
BIBM7
2024 M3-UDA: A New Benchmark for Unsupervised Domain Adaptive Fetal Cardiac Structure Detection
abstract
The anatomical structure detection of fetal cardiac views is crucial for diagnosing fetal congenital heart disease. In practice, there is a large domain gap between different hospitals' data, such as the variable data quality due to differences in acquisition equipment. In addition, accurate annotation information provided by obstetrician experts is always very costly or even unavailable. This study explores the unsupervised domain adaptive fetal cardiac structure detection issue. Existing unsupervised domain adaptive object detection (UDAOD) approaches mainly focus on detecting objects in natural scenes, such as Foggy Cityscapes, where the structural relationships of natural scenes are uncertain. Unlike all previous UDAOD scenarios, we first collected a Fetal Cardiac Structure dataset from two hospital centers, called FCS, and proposed a multi-matching UDA approach (M3-UDA), including Histogram Matching (HM), Sub-structure Matching (SM), and Global-structure Matching (GM), to better transfer the topological knowledge of anatomical structure for UDA detection in medical scenarios. HM mitigates the domain gap between the source and target caused by pixel transformation. SM fuses the different angle information of the sub-structure to obtain the local topological knowledge for bridging the domain gap of the internal sub-structure. GM is designed to align the global topological knowledge of the whole organ from the source and target domain. Extensive experiments on our collected FCS and CardiacUDA, and experimental results show that M3-UDA outperforms existing UDAOD studies significantly. Datasets and source code are available at https://github.com/xmed-lab/M3-UDA.
Bin Pu, Liwen Wang 0002, Jiewen Yang, Guannan He, Xingbo Dong, Shengli Li 0001, Zhe Jin 0001, Kenli Li 0001, Xiaomeng Li 0001
CVPR6
2024 Unsupervised Domain Adaptation for Anatomical Structure Detection in Ultrasound Images
abstract
Models trained on ultrasound images from one institution typically experience a decline in effectiveness when transferred directly to other institutions. Moreover, unlike natural images, dense and overlapped structures exist in fetus ultrasound images, making the detection of structures more challenging. Thus, to tackle this problem, we propose a new Unsupervised Domain Adaptation (UDA) method named ToMo-UDA for fetus structure detection, which consists of the Topology Knowledge Transfer (TKT) and the Morphology Knowledge Transfer (MKT) module. The TKT leverages prior knowledge of the medical anatomy of fetal as topological information, reconstructing and aligning anatomy features across source and target domains. Then, the MKT formulates a more consistent and independent morphological representation for each substructure of an organ. To evaluate the proposed ToMo-UDA for ultrasound fetal anatomical structure detection, we introduce FUSH$^2$, a new Fetal UltraSound benchmark, comprises Heart and Head images collected from Two health centers, with 16 annotated regions. Our experiments show that utilizing topological and morphological anatomy information in ToMo-UDA can greatly improve organ structure detection. This expands the potential for structure detection tasks in medical image analysis.
Bin Pu, Xingguo Lv, Jiewen Yang, Guannan He, Xingbo Dong, Yiqun Lin, Shengli Li 0001, Tan Ying, Zhe Jin 0001, Kenli Li 0001, Xiaomeng Li 0001
ICML7
2024 Unsupervised Ultrasound Image Quality Assessment with Score Consistency and Relativity Co-learning
Juncheng Guo, Guanghua Tan, Yuhuan Lu 0002, Shengli Li 0001, Kenli Li 0001
MICCAI (5)6
2024 Learning Frequency and Structure in UDA for Medical Object Detection
Liwen Wang 0002, Guannan He, Shengli Li 0001, Bin Pu, Zhe Jin 0001, Wen Sha, Xingbo Dong
PRCV (14)5
2024 Graph-enhanced ensembles of multi-scale structure perception deep architecture for fetal ultrasound plane recognition
Guanghua Tan, Chunlian Wang, Bin Pu, Shengli Li 0001, Kenli Li 0001
Eng. Appl. Artif. Intell.6
2024 An improved medical image segmentation framework with Channel-Height-Width-Spatial attention module
abstract
This paper presents an improved version of the U-Net segmentation framework for medical image segmentation, called CHWS-UNet. To build the proposed framework CHWS-UNet, we first develop a novel lightweight channel attention module called LCAM, based on which we further propose the Channel-Height-Width-Spatial (CHWS) attention module for channel, height, width, and spatial dimension-level feature refinement. Our CHWS-UNet is constructed by integrating the proposed CHWS attention modules into the shortcut paths between the encoder and the decoder stem. To justify the effectiveness of the proposed modules and networks, we then carried out extensive experiments on four public medical image datasets, including BUSI, ISIC2017, ISIC2018, PH and a proprietary uterus lesion ultrasound dataset from Shenzhen Maternity and Child Healthcare Hospital. The results show that the proposed attention module can significantly improve the performance of baseline models, even on small medical image datasets, without introducing noticeable parameters and computational costs. Further, the proposed segmentation framework can achieve promising performance compared to edge-cutting frameworks. The code can be found at CHWS-UNet.
Wenjia Guo, Yanqing Kong, Yudong Zhang 0001, Hairong Zheng, Shengli Li 0001
Eng. Appl. Artif. Intell.10
2024 Fetal cardiac ultrasound standard section detection model based on multitask learning and mixed attention mechanism
Lei Yang 0026, Bocheng Liang, Shengli Li 0001, Caixu Xu
Neurocomputing4
2024 A knowledge-interpretable multi-task learning framework for automated thyroid nodule diagnosis in ultrasound videos
Xiangqiong Wu, Guanghua Tan, Hongxia Luo, Zhilun Chen, Bin Pu, Shengli Li 0001, Kenli Li 0001
Medical Image Anal.6
2024 The End-to-End Fetal Head Circumference Detection and Estimation in Ultrasound Images
abstract
In prenatal examinations, the fetal head circumference (HC) measurement is essential for assessing fetal weight and health conditions. The sonographers obtain the fetal HC manually by fitting peripheral skull ellipse in clinical practice, which is highly subjective, time-consuming, and experience-dependent. Recently, many fetal HC automatic measurement algorithms have been proposed to improve workflow efficiency in prenatal examination. But most automatic measurement algorithms focus on using fetal head segmentation as an intermediate processing step, and HC estimation relies heavily on segmentation results, which causes the accumulation of errors in the above two stages. Independent of the segmentation method, we design a regression network to generate the oriented bounding box to detect the head contour, and directly obtain the fetal head parameters with a pixel-based ellipse regression (PER) loss. Moreover, an effective 3D attention mechanism is integrated into the network to estimate HC more precisely without adding parameters in complex ultrasound images. The extensive experimental results on the public HC18 and our clinical dataset show that the proposed network provides a feasible scheme for end-to-end estimating fetal HC, and avoids the mistake brought by the intermediary processes.
Lei Zhao 0013, Ningshu Li, Guanghua Tan, Jianguo Chen 0001, Shengli Li 0001, Mingxing Duan
IEEE Trans. Comput. Biol. Bioinform.5
2024 HFSCCD: A Hybrid Neural Network for Fetal Standard Cardiac Cycle Detection in Ultrasound Videos
abstract
In the fetal cardiac ultrasound examination, standard cardiac cycle (SCC) recognition is the essential foundation for diagnosing congenital heart disease. Previous studies have mostly focused on the detection of adult CCs, which may not be applicable to the fetus. In clinical practice, localization of SCCs needs to recognize end-systole (ES) and end-diastole (ED) frames accurately, ensuring that every frame in the cycle is a standard view. Most existing methods are not based on the detection of key anatomical structures, which may not recognize irrelevant views and background frames, results containing non-standard frames, or even it does not work in clinical practice. We propose an end-to-end hybrid neural network based on an object detector to detect SCCs from fetal ultrasound videos efficiently, which consists of 3 modules, namely Anatomical Structure Detection (ASD), Cardiac Cycle Localization (CCL), and Standard Plane Recognition (SPR). Specifically, ASD uses an object detector to identify 9 key anatomical structures, 3 cardiac motion phases, and the corresponding confidence scores from fetal ultrasound videos. On this basis, we propose a joint probability method in the CCL to learn the cardiac motion cycle based on the 3 cardiac motion phases. In SPR, to reduce the impact of structure detection errors on the accuracy of the standard plane recognition, we use XGBoost algorithm to learn the relation knowledge of the detected anatomical structures. We evaluate our method on the test fetal ultrasound video datasets and clinical examination cases and achieve remarkable results. This study may pave the way for clinical practices.
Bin Pu, Kenli Li 0001, Jianguo Chen 0001, Yuhuan Lu 0002, Qing Zeng 0005, Jiewen Yang, Shengli Li 0001
IEEE J. Biomed. Health Informatics7
2024 FARN: Fetal Anatomy Reasoning Network for Detection With Global Context Semantic and Local Topology Relationship
abstract
Accurate recognition of fetal anatomical structure is a pivotal task in ultrasound (US) image analysis. Sonographers naturally apply anatomical knowledge and clinical expertise to recognizing key anatomical structures in complex US images. However, mainstream object detection approaches usually treat each structure recognition separately, overlooking anatomical correlations between different structures in fetal US planes. In this work, we propose a Fetal Anatomy Reasoning Network (FARN) that incorporates two kinds of relationship forms: a global context semantic block summarized with visual similarity and a local topology relationship block depicting structural pair constraints. Specifically, by designing the Adaptive Relation Graph Reasoning (ARGR) module, anatomical structures are treated as nodes, with two kinds of relationships between nodes modeled as edges. The flexibility of the model is enhanced by constructing the adaptive relationship graph in a data-driven way, enabling adaptation to various data samples without the need for predefined additional constraints. The feature representation is further refined by aggregating the outputs of the ARGR module. Comprehensive experimental results demonstrate that FARN achieves promising performance in detecting 37 anatomical structures across key US planes in tertiary obstetric screening. FARN effectively utilizes key relationships to improve detection performance, demonstrates robustness to small-scale, similar, and indistinct structures, and avoids some detection errors that deviate from anatomical norms. Overall, our study serves as a resource for developing efficient and concise approaches to model inter-anatomy relationships.
Lei Zhao 0013, Guanghua Tan, Qianghui Wu, Bin Pu, Hongliang Ren 0001, Shengli Li 0001, Kenli Li 0001
IEEE J. Biomed. Health Informatics6
2022 An ultrasound standard plane detection model of fetal head based on multi-task learning and hybrid knowledge graph
Lei Zhao 0013, Kenli Li 0001, Bin Pu, Jianguo Chen 0001, Shengli Li 0001, Xiangke Liao
Future Gener. Comput. Syst.5
2022 A Novel Deep Learning Framework for Automatic Recognition of Thyroid Gland and Tissues of Neck in Ultrasound Image
abstract
Recognition of thyroid glands and tissues of the neck is vital for screening related diseases in ultrasound videos. This task is subjective, challenging, and dependent on the experience of sonographer in current clinical practice. The purpose is to develop a fully automated thyroid gland and tissues of neck recognition framework to assist doctors in distinguishing the boundaries of different tissues. In this paper, we propose a novel deep learning framework that consists of a feature extraction network, region proposal network, object detection head, and spatial pyramid RoIAlign-based segmentation head. Designed spatial pyramid RoIAlign can efficiently capture local and global context features, and aggregates the multiple context information that makes the result much more reliable. A large dataset is constructed to train the proposed method. The performance is evaluated using the COCO metrics. The experimental results demonstrate that the proposed deep learning method can effectively realize the automatic recognition of the thyroid gland and tissues of neck in ultrasound videos. Considering the clinical practical application scenarios, we developed an automatic recognition system of thyroid and neck tissue based on edge computing, which can expediently assist doctors in distinguishing the boundaries between different tissues.
Laifa Ma, Guanghua Tan, Hongxia Luo, Qing Liao 0001, Shengli Li 0001, Kenli Li 0001
IEEE Trans. Circuits Syst. Video Technol.5
2022 MobileUNet-FPN: A Semantic Segmentation Model for Fetal Ultrasound Four-Chamber Segmentation in Edge Computing Environments
abstract
The apical four-chamber (A4C) view in fetal echocardiography is a prenatal examination widely used for the early diagnosis of congenital heart disease (CHD). Accurate segmentation of A4C key anatomical structures is the basis for automatic measurement of growth parameters and necessary disease diagnosis. However, due to the ultrasound imaging arising from artefacts and scattered noise, the variability of anatomical structures in different gestational weeks, and the discontinuity of anatomical structure boundaries, accurately segmenting the fetal heart organ in the A4C view is a very challenging task. To this end, we propose to combine an explicit Feature Pyramid Network (FPN), MobileNet and UNet, i.e., MobileUNet-FPN, for the segmentation of 13 key heart structures. To our knowledge, this is the first AI-based method that can segment so many anatomical structures in fetal A4C view. We split the MobileNet backbone network into four stages and use the features of these four phases as the encoder and the upsampling operation as the decoder. We build an explicit FPN network to enhance multi-scale semantic information and ultimately generate segmentation masks of key anatomical structures. In addition, we design a multi-level edge computing system and deploy the distributed edge nodes in different hospitals and city servers, respectively. Then, we train the MobileUNet-FPN model in parallel at each edge node to effectively reduce the network communication overhead. Extensive experiments are conducted and the results show the superior performance of the proposed model on the fetal A4C and femoral-length images.
Bin Pu, Yuhuan Lu 0002, Jianguo Chen 0001, Shengli Li 0001, Ningbo Zhu, Wei Wei 0006, Kenli Li 0001
IEEE J. Biomed. Health Informatics4
2021 Fetal cardiac cycle detection in multi-resource echocardiograms using hybrid classification framework
Bin Pu, Ningbo Zhu, Kenli Li 0001, Shengli Li 0001
Future Gener. Comput. Syst.4
2021 Automatic Fetal Ultrasound Standard Plane Recognition Based on Deep Learning and IIoT
abstract
Intelligent ultrasound imaging based on deep learning is one of the important applications in the field of intelligent medical care. In this article, we propose an automatic fetal ultrasound standard plane recognition (FUSPR) model based on deep learning in the Industrial Internet of Things (IIoT) environment. We build a distributed ultrasound data processing and predicting platform by using the IIoT and high-performance computing (HPC) technology. The FUSPR model deployed in the HPC center consists of a convolutional neural network (CNN) component and a recurrent neural network (RNN) component, which learns the spatial and temporal features of the ultrasound video stream by using multitask learning, respectively. The CNN component identifies fetal key anatomical structures from each video frame and accurately recognizes the potential four fetal standard planes. The RNN component obtains the temporal information between adjacent frames, and it realizes precise localization and tracking of fetal organs across frames. In addition, we introduce two feature fusion strategies into the FUSPR model, i.e., CNN fusion and RNN fusion, to fit the spatial sequence and motion representation in the video stream, thereby effectively improving the accuracy and robustness of the model. Extensive experiments conducted on more than 1000 ultrasound videos show that the FUSPR model is superior to the competing baselines in terms of accuracy and performance.
Bin Pu, Kenli Li 0001, Shengli Li 0001, Ningbo Zhu
IEEE Trans. Ind. Informatics3
2020 Game theoretic interpretability for learning based preoperative gliomas grading
Laifa Ma, Kenli Li 0001, Shengli Li 0001, Xiaoping Yi
Future Gener. Comput. Syst.4
2020 Deep Parametric Active Contour Model for Neurofibromatosis Segmentation
Xiangqiong Wu, Guanghua Tan, Kenli Li 0001, Shengli Li 0001, Huaxuan Wen, Xianyi Zhu, Wenli Cai
Future Gener. Comput. Syst.4
2020 A Generic Quality Control Framework for Fetal Ultrasound Cardiac Four-Chamber Planes
abstract
Quality control/assessment of ultrasound (US) images is an essential step in clinical diagnosis. This process is usually done manually, suffering from some drawbacks, such as dependence on operator's experience and extensive labors, as well as high inter- and intra-observer variation. Automatic quality assessment of US images is therefore highly desirable. Fetal US cardiac four-chamber plane (CFP) is one of the most commonly used cardiac views, which was used in the diagnosis of heart anomalies in the early 1980s. In this paper, we propose a generic deep learning framework for automatic quality control of fetal US CFPs. The proposed framework consists of three networks: (1) a basic CNN (B-CNN), roughly classifying four-chamber views from the raw data; (2) a deeper CNN (D-CNN), determining the gain and zoom of the target images in a multi-task learning manner; and (3) the aggregated residual visual block net (ARVBNet), detecting the key anatomical structures on a plane. Based on the output of the three networks, overall quantitative score of each CFP is obtained, so as to achieve fully automatic quality control. Experiments on a fetal US dataset demonstrated our proposed method achieved a highest mean average precision (mAP) of 93.52% at a fast speed of 101 frames per second (FPS). In order to demonstrate the adaptability and generalization capacity, the proposed detection network (i.e., ARVBNet) has also been validated on the PASCAL VOC dataset, obtaining a highest mAP of 81.2% when input size is approximately 300 × 300.
Jinbao Dong, Shengfeng Liu, Yimei Liao, Huaxuan Wen, Bai Ying Lei, Shengli Li 0001, Tianfu Wang 0001
IEEE J. Biomed. Health Informatics6
2019 FetusMap: Fetal Pose Estimation in 3D Ultrasound
Xin Yang 0009, Wenlong Shi, Haoran Dou, Jikuan Qian, Yi Wang 0031, Wufeng Xue, Shengli Li 0001, Dong Ni 0001, Pheng-Ann Heng
MICCAI (5)7
2019 Multi-task learning for quality assessment of fetal head ultrasound images
Shengli Li 0001, Dong Ni 0001, Yimei Liao, Huaxuan Wen, Jie Du 0001, Siping Chen, Tianfu Wang 0001, Bai Ying Lei
Medical Image Anal.2
2019 Towards Automated Semantic Segmentation in Prenatal Volumetric Ultrasound
abstract
Volumetric ultrasound is rapidly emerging as a viable imaging modality for routine prenatal examinations. Biometrics obtained from the volumetric segmentation shed light on the reformation of precise maternal and fetal health monitoring. However, the poor image quality, low contrast, boundary ambiguity, and complex anatomy shapes conspire toward a great lack of efficient tools for the segmentation. It makes 3-D ultrasound difficult to interpret and hinders the widespread of 3-D ultrasound in obstetrics. In this paper, we are looking at the problem of semantic segmentation in prenatal ultrasound volumes. Our contribution is threefold: 1) we propose the first and fully automatic framework to simultaneously segment multiple anatomical structures with intensive clinical interest, including fetus, gestational sac, and placenta, which remains a rarely studied and arduous challenge; 2) we propose a composite architecture for dense labeling, in which a customized 3-D fully convolutional network explores spatial intensity concurrency for initial labeling, while a multi-directional recurrent neural network (RNN) encodes spatial sequentiality to combat boundary ambiguity for significant refinement; and 3) we introduce a hierarchical deep supervision mechanism to boost the information flow within RNN and fit the latent sequence hierarchy in fine scales, and further improve the segmentation results. Extensively verified on in-house large data sets, our method illustrates a superior segmentation performance, decent agreements with expert measurements and high reproducibilities against scanning variations, and thus is promising in advancing the prenatal ultrasound examinations.
Xin Yang 0009, Lequan Yu, Shengli Li 0001, Huaxuan Wen, Dandan Luo, Cheng Bian, Harry Qin, Dong Ni 0001, Pheng-Ann Heng
IEEE Trans. Medical Imaging3
2018 Generalizing Deep Models for Ultrasound Image Segmentation
Xin Yang 0009, Haoran Dou, Xu Wang 0017, Cheng Bian, Shengli Li 0001, Dong Ni 0001, Pheng-Ann Heng
MICCAI (4)6
2018 Automatic Fetal Head Circumference Measurement in Ultrasound Using Random Forest and Fast Ellipse Fitting
abstract
Head circumference (HC) is one of the most important biometrics in assessing fetal growth during prenatal ultrasound examinations. However, the manual measurement of this biometric by doctors often requires substantial experience. We developed a learning-based framework that used prior knowledge and employed a fast ellipse fitting method (ElliFit) to measure HC automatically. We first integrated the prior knowledge about the gestational age and ultrasound scanning depth into a random forest classifier to localize the fetal head. We further used phase symmetry to detect the center line of the fetal skull and employed ElliFit to fit the HC ellipse for measurement. The experimental results from 145 HC images showed that our method had an average measurement error of 1.7 mm and outperformed traditional methods. The experimental results demonstrated that our method shows great promise for applications in clinical practice.
Yi Wang 0031, Bai Ying Lei, Jie-Zhi Cheng, Harry Qin, Tianfu Wang 0001, Shengli Li 0001, Dong Ni 0001
IEEE J. Biomed. Health Informatics7
2018 A Deep Convolutional Neural Network-Based Framework for Automatic Fetal Facial Standard Plane Recognition
abstract
Ultrasound imaging has become a prevalent examination method in prenatal diagnosis. Accurate acquisition of fetal facial standard plane (FFSP) is the most important precondition for subsequent diagnosis and measurement. In the past few years, considerable effort has been devoted to FFSP recognition using various hand-crafted features, but the recognition performance is still unsatisfactory due to the high intraclass variation of FFSPs and the high degree of visual similarity between FFSPs and other non-FFSPs. To improve the recognition performance, we propose a method to automatically recognize FFSP via a deep convolutional neural network (DCNN) architecture. The proposed DCNN consists of 16 convolutional layers with small 3 × 3 size kernels and three fully connected layers. A global average pooling is adopted in the last pooling layer to significantly reduce network parameters, which alleviates the overfitting problems and improves the performance under limited training data. Both the transfer learning strategy and a data augmentation technique tailored for FFSP are implemented to further boost the recognition performance. Extensive experiments demonstrate the advantage of our proposed method over traditional approaches and the effectiveness of DCNN to recognize FFSP for clinical diagnosis.
Ee-Leng Tan, Dong Ni 0001, Harry Qin, Siping Chen, Shengli Li 0001, Bai Ying Lei, Tianfu Wang 0001
IEEE J. Biomed. Health Informatics6
2017 Towards Automatic Semantic Segmentation in Volumetric Ultrasound
Xin Yang 0009, Lequan Yu, Shengli Li 0001, Xu Wang 0017, Harry Qin, Dong Ni 0001, Pheng-Ann Heng
MICCAI (1)3
2017 Ultrasound Standard Plane Detection Using a Composite Neural Network Framework
abstract
Ultrasound (US) imaging is a widely used screening tool for obstetric examination and diagnosis. Accurate acquisition of fetal standard planes with key anatomical structures is very crucial for substantial biometric measurement and diagnosis. However, the standard plane acquisition is a labor-intensive task and requires operator equipped with a thorough knowledge of fetal anatomy. Therefore, automatic approaches are highly demanded in clinical practice to alleviate the workload and boost the examination efficiency. The automatic detection of standard planes from US videos remains a challenging problem due to the high intraclass and low interclass variations of standard planes, and the relatively low image quality. Unlike previous studies which were specifically designed for individual anatomical standard planes, respectively, we present a general framework for the automatic identification of different standard planes from US videos. Distinct from conventional way that devises hand-crafted visual features for detection, our framework explores in- and between-plane feature learning with a novel composite framework of the convolutional and recurrent neural networks. To further address the issue of limited training data, a multitask learning framework is implemented to exploit common knowledge across detection tasks of distinctive standard planes for the augmentation of feature learning. Extensive experiments have been conducted on hundreds of US fetus videos to corroborate the better efficacy of the proposed framework on the difficult standard plane detection problem.
Hao Chen 0011, Lingyun Wu, Qi Dou 0001, Harry Qin, Shengli Li 0001, Jie-Zhi Cheng, Dong Ni 0001, Pheng-Ann Heng
IEEE Trans. Cybern.5
2017 FUIQA: Fetal Ultrasound Image Quality Assessment With Deep Convolutional Networks
abstract
The quality of ultrasound (US) images for the obstetric examination is crucial for accurate biometric measurement. However, manual quality control is a labor intensive process and often impractical in a clinical setting. To improve the efficiency of examination and alleviate the measurement error caused by improper US scanning operation and slice selection, a computerized fetal US image quality assessment (FUIQA) scheme is proposed to assist the implementation of US image quality control in the clinical obstetric examination. The proposed FUIQA is realized with two deep convolutional neural network models, which are denoted as L-CNN and C-CNN, respectively. The L-CNN aims to find the region of interest (ROI) of the fetal abdominal region in the US image. Based on the ROI found by the L-CNN, the C-CNN evaluates the image quality by assessing the goodness of depiction for the key structures of stomach bubble and umbilical vein. To further boost the performance of the L-CNN, we augment the input sources of the neural network with the local phase features along with the original US data. It will be shown that the heterogeneous input sources will help to improve the performance of the L-CNN. The performance of the proposed FUIQA is compared with the subjective image quality evaluation results from three medical doctors. With comprehensive experiments, it will be illustrated that the computerized assessment with our FUIQA scheme can be comparable to the subjective ratings from medical doctors.
Lingyun Wu, Jie-Zhi Cheng, Shengli Li 0001, Bai Ying Lei, Tianfu Wang 0001, Dong Ni 0001
IEEE Trans. Cybern.3
2015 Automatic Fetal Ultrasound Standard Plane Detection Using Knowledge Transferred Recurrent Neural Networks
Hao Chen 0011, Qi Dou 0001, Dong Ni 0001, Jie-Zhi Cheng, Harry Qin, Shengli Li 0001, Pheng-Ann Heng
MICCAI (1)6
2015 Standard Plane Localization in Fetal Ultrasound via Domain Transferred Deep Neural Networks
abstract
Automatic localization of the standard plane containing complicated anatomical structures in ultrasound (US) videos remains a challenging problem. In this paper, we present a learning-based approach to locate the fetal abdominal standard plane (FASP) in US videos by constructing a domain transferred deep convolutional neural network (CNN). Compared with previous works based on low-level features, our approach is able to represent the complicated appearance of the FASP and hence achieve better classification performance. More importantly, in order to reduce the overfitting problem caused by the small amount of training samples, we propose a transfer learning strategy, which transfers the knowledge in the low layers of a base CNN trained from a large database of natural images to our task-specific CNN. Extensive experiments demonstrate that our approach outperforms the state-of-the-art method for the FASP localization as well as the CNN only trained on the limited US training samples. The proposed approach can be easily extended to other similar medical image computing problems, which often suffer from the insufficient training samples when exploiting the deep CNN to represent high-level features.
Hao Chen 0011, Dong Ni 0001, Harry Qin, Shengli Li 0001, Xin Yang 0009, Tianfu Wang 0001, Pheng-Ann Heng
IEEE J. Biomed. Health Informatics4