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C. J. Walsh

dblp:02/366 · DBLP profile ↗
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2ranked-venue papers
0as first author
0since 2021 · last 2020
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Human-computer interaction and ubiquitous computing · 1Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › protein function prediction
protein subcellular localization prediction
0.112005
PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis · Bioinform. 2005
Bioinformatics and computational biology › proteomics
proteome comparison
0.012005
PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis · Bioinform. 2005

Methods — techniques the papers use, named apart from their topics

support vector machine · 0.1frequent subsequence · 0.1
YearPublicationVenuePosition
2020 Sleep Ecologies: Tools for Snoozy Autoethnography
abstract
Autoethnographic and other first-person research methods are a topic of increasing interest in design and HCI. This focus parallels the boom in self-tracking and personal informatics, perhaps most intriguingly in the intersection of quantitative and qualitative data and the noticing of patterns in one's own life and everyday wellbeing. But how can design support this? One opportunity is for research probes, or tools, which enable forms of self-inquiry, by design researchers themselves, or others. In this paper-with the broad scope of healthier student sleep as a domain-we present a series of artifacts designed by undergraduates as tools to enable autoethnographic exploration, and detail how they have been used to investigate bedtime routines, personal scheduling of time, focus, sleep data, and sleeping in non-traditional places. We also reflect on the notion of combination autoethnographic 'kits' as a way forward for forms of self-inquiry.
Dan Lockton, Tammar Zea-Wolfson, Jackie Chou, Yuhan (Antonio) Song, Erin Ryan, C. J. Walsh
Conference on Designing Interactive Systems6
2005 PSORTb v.2.0: Expanded prediction of bacterial protein subcellular localization and insights gained from comparative proteome analysis
abstract
MOTIVATION: PSORTb v.1.1 is the most precise bacterial localization prediction tool available. However, the program's predictive coverage and recall are low and the method is only applicable to Gram-negative bacteria. The goals of the present work are as follows: increase PSORTb's coverage while maintaining the existing precision level, expand it to include Gram-positive bacteria and then carry out a comparative analysis of localization. RESULTS: An expanded database of proteins of known localization and new modules using frequent subsequence-based support vector machines was introduced into PSORTb v.2.0. The program attains a precision of 96% for Gram-positive and Gram-negative bacteria and predictive coverage comparable to other tools for whole proteome analysis. We show that the proportion of proteins at each localization is remarkably consistent across species, even in species with varying proteome size. AVAILABILITY: Web-based version: http://www.psort.org/psortb. Standalone version: Available through the website under GNU General Public License. CONTACT: [email protected], [email protected] SUPPLEMENTARY INFORMATION: http://www.psort.org/psortb/supplementaryinfo.html.
Jennifer L. Gardy, Matthew R. Laird, Fei Chen 0002, Sébastien Rey, C. J. Walsh, Martin Ester, Fiona S. L. Brinkman
Bioinform.5