Recent advances in biological technologies, such as multi-way chromosome conformation capture (3C), require development of methods for analysis of multi-way interactions. Hypergraphs are mathematically tractable objects that can be utilized to precisely represent and analyze multi-way interactions. Here we present the Hypergraph Analysis Toolbox (HAT), a software package for visualization and analysis of multi-way interactions in complex systems.

This paper develops a new mathematical framework that enables nonparametric joint semantic and geometric representation of continuous functions using data. The joint embedding is modeled by representing the processes in a reproducing kernel Hilbert space. The functions can be defined on arbitrary smooth manifolds where the action of a Lie group aligns them. The continuous functions allow the registration to be independent of a specific signal resolution. The framework is fully analytical with a closed-form derivation of the Riemannian gradient and Hessian. We study a more specialized but widely used case where the Lie group acts on functions isometrically. We solve the problem by maximizing the inner product between two functions defined over data, while the continuous action of the rigid body motion Lie group is captured through the integration of the flow in the corresponding Lie algebra. Low-dimensional cases are derived with numerical examples to show the generality of the proposed framework. The high-dimensional derivation for the special Euclidean group acting on the Euclidean space showcases the point cloud registration and bird's-eye view map registration abilities. An implementation of this framework for RGB-D cameras outperforms the state-of-the-art robust visual odometry and performs well in texture and structure-scarce environments.

Obtains feedback stabilization of an inverted pendulum on a rotor arm by the "method of controlled Lagrangians". This approach involves modifying the Lagrangian for the uncontrolled system so that the Euler-Lagrange equations derived from the modified or "controlled" Lagrangian describe the closed-loop system. For the closed-loop equations to be consistent with available control inputs, the modifications to the Lagrangian must satisfy "matching" conditions. The pendulum on a rotor arm requires an interesting generalization of our earlier approach which was used for systems such as a pendulum on a cart.