Estimating the latent dynamics underlying biological processes is a central problem in computational biology. State-space models with Gaussian statistics are widely used for estimation of such latent dynamics and have been successfully utilized in the analysis of biological data. Gaussian statistics, however, fail to capture several key features of the dynamics of biological processes (e.g., brain dynamics) such as abrupt state changes and exogenous processes that affect the states in a structured fashion. Although Gaussian mixture process noise models have been considered as an alternative to capture such effects, data-driven inference of their parameters is not well-established in the literature. The objective of this paper is to develop efficient algorithms for inferring the parameters of a general class of Gaussian mixture process noise models from noisy and limited observations, and to utilize them in extracting the neural dynamics that underlie auditory processing from magnetoencephalography (MEG) data in a cocktail party setting. We develop an algorithm based on Expectation-Maximization to estimate the process noise parameters from state-space observations. We apply our algorithm to simulated and experimentally-recorded MEG data from auditory experiments in the cocktail party paradigm to estimate the underlying dynamic Temporal Response Functions (TRFs). Our simulation results show that the richer representation of the process noise as a Gaussian mixture significantly improves state estimation and capturing the heterogeneity of the TRF dynamics. Application to MEG data reveals improvements over existing TRF estimation techniques, and provides a reliable alternative to current approaches for probing neural dynamics in a cocktail party scenario, as well as attention decoding in emerging applications such as smart hearing aids. Our proposed methodology provides a framework for efficient inference of Gaussian mixture process noise models, with application to a wide range of biological data with underlying heterogeneous and latent dynamics.

Wireless sensor nodes capable of acquiring and transmitting biosignals are increasingly important to address future needs in healthcare monitoring. One of the main issues in designing these systems is the unavoidable energy constraint due to the limited battery lifetime, which strictly limits the amount of data that may be transmitted. Compressed Sensing (CS) is an emerging technique for introducing low-power, real-time compression of the acquired signals before transmission. The recently developed rakeness approach is capable of further increasing CS performance. In this paper we apply the rakeness-CS technique to enhance compression capabilities for electroencephalographic (EEG) signals, and particularly for Evoked Potentials (EP), which are recordings of the neural activity evoked by the presentation of a stimulus. Simulation results demonstrate that EPs are correctly reconstructed using rakeness-CS with a compression factor of 16. Additionally, some interesting denoising capabilities are identified: the high-frequency noise components are rejected and the 60 Hz power line noise is decreased by more than 20dB with respect to the state-of-the-art filtering when rakeness-CS techniques are applied to the EEG data stream.

We report a low cost mobile EEG system for characterizing cortical auditory responses. The system is built using commercial off-the-shelf components and each unit costs less than $200. It measures seven EEG channels plus one audio channel (envelope only), and communicates the data to external devices via Bluetooth. A novel implementation was pursued in order to support local signal compression using compressed sensing. At the same time, it provides a low cost solution that is useful for recording cortical auditory responses and extracting clinically relevant features of the waveform. This system has been designed with the eventual goal of long term monitoring of the brain activity of schizophrenic patients outside a clinical setting, in order to better understand auditory hallucinations and manage their ongoing treatment. In this preliminary study we obtained simultaneous audio and cortical recordings of evoked auditory responses from normal healthy subjects wearing the EEG for several hours in duration. We report evoked auditory responses for 2 Hz and 40 Hz click trains. We also report alpha wave responses, demonstrating stable and high quality recordings over a five hour period.

Sound localization is known to be a complex phenomenon, combining multisensory information processing, experience-dependent plasticity, and movement. Here we present a sensorimotor model that addresses the question of how an organism could learn to localize sound sources without any a priori neural representation of its head-related transfer function or prior experience with auditory spatial information. We demonstrate quantitatively that the experience of the sensory consequences of its voluntary motor actions allows an organism to learn the spatial location of any sound source. Using examples from humans and echolocating bats, our model shows that a naive organism can learn the auditory space based solely on acoustic inputs and their relation to motor states.

We present a method for removing environmental noise from physiological recordings such as magnetoencephalography (MEG) for which noise-sensitive reference channels are available. Sensor signals are projected on a subspace spanned by the reference channels augmented by time-shifted and/or nonlinearly transformed versions of the same, and the projections are removed to obtain "clean" sensor signals. The method compensates for scalar, convolutional or non-linear mismatches between sensor and reference channels by synthesizing, for each reference/sensor pair, a filter that is optimal in a least-squares sense for removal of the artifact. The method was tested with synthetic and real MEG data, typically removing up to 98% of noise variance. It offers an alternative to bulky and costly magnetic shielding (multiple layers of aluminium and mu-metal) for present scientific and medical applications and future developments such as brain-machine interfaces (BMI).

Neurons in primary auditory cortex (AI) in the ferret (Mustela putorius) that are well described by their spectrotemporal response field (STRF) are found also to have a distinctive property that we call temporal symmetry. For temporally symmetric neurons, every temporal cross-section of the STRF (impulse response) is given by the same function of time, except for a scaling and a Hilbert rotation. This property held in 85% of neurons (123 out of 145) recorded from awake animals and in 96% of neurons (70 out of 73) recorded from anesthetized animals. This property of temporal symmetry is highly constraining for possible models of functional neural connectivity within and into AI. We find that the simplest models of functional thalamic input, from the ventral medial geniculate body (MGB), into the entry layers of AI are ruled out because they are incompatible with the constraints of the observed temporal symmetry. This is also the case for the simplest models of functional intracortical connectivity. Plausible models that do generate temporal symmetry, from both thalamic and intracortical inputs, are presented. In particular, we propose that two specific characteristics of the thalamocortical interface may be responsible. The first is a temporal mismatch between the fast dynamics of the thalamus and the slow responses of the cortex. The second is that all thalamic inputs into a cortical module (or a cluster of cells) must be restricted to one point of entry (or one cell in the cluster). This latter property implies a lack of correlated horizontal interactions across cortical modules during the STRF measurements. The implications of these insights in the auditory system, and comparisons with similar properties in the visual system, are explored.