Demonstration venue · read-only. Every page can be browsed; the buttons that would change it are switched off. Create an account to run TaxoReview on your own data. A simulation from public publication records: the people listed were not invited and did not agree to review.
? Tutorial for this page

Fernando Seabra Chirigati

dblp:04/5404 · also Fernando Chirigati · DBLP profile ↗
← Back
14ranked-venue papers
6as first author
2since 2021 · last 2021
0000-0002-9566-5835ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Databases, data management, data science and information retrieval · 13 · 6 first-author · 2 since 2021Artificial intelligence and machine learning · 1Systems, architecture and hardware · 1Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Databases, data mining, and information retrieval
7 papers
Knowledge graphs · 19% Information retrieval · 16% Query processing and optimization · 13%
Software engineering, system software, and programming languages
2 papers
Software maintenance and evolution · 50% Program analysis · 50%
Interdisciplinary, comprehensive, and emerging computing
2 papers
Computational science and engineering · 100%
Computer graphics and multimedia
1 paper
Visualization and visual analytics · 100%

Topics — the 17 heaviest of 20, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Query processing and optimization
approximate query processing
0.512021
Correlation Sketches for Approximate Join-Correlation Queries · SIGMOD Conference 2021
Information retrieval › search engines
dataset search
0.512021
Auctus: A Dataset Search Engine for Data Discovery and Augmentation · Proc. VLDB Endow. 2021
Data stream processing
sketch
0.512021
Correlation Sketches for Approximate Join-Correlation Queries · SIGMOD Conference 2021
Computational science and engineering
computational reproducibility
0.422016
ReproZip: Computational Reproducibility With Ease · SIGMOD Conference 2016
Packing experiments for sharing and publication · SIGMOD Conference 2013
Software maintenance and evolution › software dependencies
dependency tracking
0.422016
ReproZip: Computational Reproducibility With Ease · SIGMOD Conference 2016
Packing experiments for sharing and publication · SIGMOD Conference 2013
Program analysis
provenance capture
0.422016
ReproZip: Computational Reproducibility With Ease · SIGMOD Conference 2016
Packing experiments for sharing and publication · SIGMOD Conference 2013
Visualization and visual analytics
visual analytics
0.312017
Querying and Exploring Polygamous Relationships in Urban Spatio-Temporal Data Sets · SIGMOD Conference 2017
Knowledge graphs
knowledge exploration
0.212016
Knowledge Exploration using Tables on the Web · Proc. VLDB Endow. 2016
Data models and query languages
NoSQL database
0.212016
Virtual lightweight snapshots for consistent analytics in NoSQL stores · ICDE 2016
Knowledge graphs › relation learning
relation discovery
0.212016
Data Polygamy: The Many-Many Relationships among Urban Spatio-Temporal Data Sets · SIGMOD Conference 2016
Transaction processing and concurrency control › isolation levels
snapshot isolation
0.212016
Virtual lightweight snapshots for consistent analytics in NoSQL stores · ICDE 2016
Spatial and temporal data management › trajectory analysis
spatiotemporal data analysis
0.212016
Data Polygamy: The Many-Many Relationships among Urban Spatio-Temporal Data Sets · SIGMOD Conference 2016
Graph data management › graph algorithms
graph traversal
0.212014
The More the Merrier: Efficient Multi-Source Graph Traversal · Proc. VLDB Endow. 2014
Machine learning and data management
data management for machine learning
0.112021
Auctus: A Dataset Search Engine for Data Discovery and Augmentation · Proc. VLDB Endow. 2021
Information retrieval › indexing
sketch index
0.112021
Correlation Sketches for Approximate Join-Correlation Queries · SIGMOD Conference 2021
Web and social media mining › web mining
web table mining
0.112016
Knowledge Exploration using Tables on the Web · Proc. VLDB Endow. 2016
Graph data management
graph analytics
0.112014
The More the Merrier: Efficient Multi-Source Graph Traversal · Proc. VLDB Endow. 2014

Methods — techniques the papers use, named apart from their topics

provenance tracking · 0.8dependency identification · 0.8sketching · 0.5dataset search engine architecture · 0.5correlation estimation · 0.5versioning · 0.2user study · 0.2topology-based analysis · 0.2statistical significance testing · 0.2snapshot isolation · 0.2
YearPublicationVenuePosition
2021 Correlation Sketches for Approximate Join-Correlation Queries
abstract
The increasing availability of structured datasets, from Web tables and open-data portals to enterprise data, opens up opportunities to enrich analytics and improve machine learning models through relational data augmentation. In this paper, we introduce a new class of data augmentation queries: join-correlation queries. Given a column Q and a join column KQ from a query table TQ, retrieve tables TX in a dataset collection such that TX is joinable with TQ on KQ and there is a column C ∈ TX such that Q is correlated with C. A naïve approach to evaluate these queries, which first finds joinable tables and then explicitly joins and computes correlations between Q and all columns of the discovered tables, is prohibitively expensive. To efficiently support correlated column discovery, we 1) propose a sketching method that enables the construction of an index for a large number of tables and that provides accurate estimates for join-correlation queries, and 2) explore different scoring strategies that effectively rank the query results based on how well the columns are correlated with the query. We carry out a detailed experimental evaluation, using both synthetic and real data, which shows that our sketches attain high accuracy and the scoring strategies lead to high-quality rankings.
Aécio S. R. Santos, Aline Bessa, Fernando Seabra Chirigati, Christopher Musco, Juliana Freire
SIGMOD Conference3
2021 Auctus: A Dataset Search Engine for Data Discovery and Augmentation
abstract
The large volumes of structured data currently available, from Web tables to open-data portals and enterprise data, open up new opportunities for progress in answering many important scientific, societal, and business questions. However, finding relevant data is difficult. While search engines have addressed this problem for Web documents, there are many new challenges involved in supporting the discovery of structured data. We demonstrate how the Auctus dataset search engine addresses some of these challenges. We describe the system architecture and how users can explore datasets through a rich set of queries. We also present case studies which show how Auctus supports data augmentation to improve machine learning models as well as to enrich analytics.
Sonia Castelo Quispe, Rémi Rampin, Aécio S. R. Santos, Aline Bessa, Fernando Seabra Chirigati, Juliana Freire
Proc. VLDB Endow.5
2019 Understanding Spatio-Temporal Urban Processes
abstract
Increasingly, decisions are based on insights and conclusions derived from the results of data analysis. Thus, determining the validity of these results is of paramount importance. In this paper, we take a step towards helping users identify potential issues in spatio-temporal data and thus gain trust in the results they derived from these data. We focus on processes that are captured by relationships among datasets that serve as the data exhaust for different components of urban environments. In this scenario, debugging data involves two important challenges: the inherent complexity of spatio-temporal data, and the number of possible relationships. We propose a framework for profiling spatio-temporal relationships that automatically identifies data slices that present a significant deviation from what is expected, and thus, helps focus a user's attention on slices of the data that may have quality issues and/or that may affect the conclusions derived from the analysis' results. We describe the profiling methodology and how it derives relationships, identifies candidate deviations, assesses their statistical significance, and measures their magnitude. We also present a series of cases studies using real datasets from New York City which demonstrate the usefulness of spatio-temporal profiling to build trust on data analysis' results.
Lais M. A. Rocha, Aline Bessa, Fernando Seabra Chirigati, Eugene OFriel, Mirella M. Moro, Juliana Freire
IEEE BigData3
2017 Querying and Exploring Polygamous Relationships in Urban Spatio-Temporal Data Sets
abstract
The Data Polygamy framework allows users to uncover interesting patterns and interactions in the data exhaust from different components of an urban environment. But analyzing the plethora of relationships derived by the framework is challenging. In this demo, we show how visualization can help in the discovery of relationships that are potentially interesting by allowing users to query and explore the relationship set in an intuitive way. We will demonstrate the effectiveness of the visual interface through case studies, and demo visitors will also interact with the polygamous relationships.
Gromit Yeuk-Yin Chan, Fernando Seabra Chirigati, Harish Doraiswamy, Cláudio T. Silva, Juliana Freire
SIGMOD Conference2
2017 HESML: A scalable ontology-based semantic similarity measures library with a set of reproducible experiments and a replication dataset
abstract
• This work is a detailed companion reproducibility paper of the methods and experiments proposed in three previous works by Lastra-Díaz and García-Serrano, which introduce a set of reproducible experiments on word similarity based on HESML and ReproZip with the aim of exactly reproducing the experimental surveys in the aforementioned works. • This work introduces a new representation model for taxonomies called PosetHERep, and a Java software library called Half-Edge Semantic Measures Library (HESML) based on it, which implements most ontology-based semantic similarity measures and Information Content (IC) models based on WordNet reported in the literature. • PosetHERep proposes a memory-efficient representation for taxonomies which linearly scales with the size of the taxonomy and provides an efficient implementation of a large set of topological queries and graph-based algorithms, which is an adaptation of the half-edge data structure commonly used to represent discrete manifolds and planar graphs in computational geometry. • This work also introduces a replication framework and dataset, called WNSimRep v1, which is provided as supplementary material and whose aim is to assist the exact replication of most similarity measures and IC models reported in the literature. • Finally, this work introduces an experimental survey on the performance and scalability of the most recent state-of-the-art semantic measures libraries. This latter experimental survey confirms the statistically significant outperformance of HESML on the state-of-the-art libraries in terms of performance and scalability, as well as the possibility to improve significantly the performance and scalability of the semantic measures libraries without caching using PosetHERep. This work is a detailed companion reproducibility paper of the methods and experiments proposed by Lastra-Díaz and García-Serrano in (2015, 2016) [56–58], which introduces the following contributions: (1) a new and efficient representation model for taxonomies, called PosetHERep , which is an adaptation of the half-edge data structure commonly used to represent discrete manifolds and planar graphs; (2) a new Java software library called the Half-Edge Semantic Measures Library ( HESML) based on PosetHERep , which implements most ontology-based semantic similarity measures and Information Content (IC) models reported in the literature; (3) a set of reproducible experiments on word similarity based on HESML and ReproZip with the aim of exactly reproducing the experimental surveys in the three aforementioned works; (4) a replication framework and dataset, called WNSimRep v1 , whose aim is to assist the exact replication of most methods reported in the literature; and finally, (5) a set of scalability and performance benchmarks for semantic measures libraries. PosetHERep and HESML are motivated by several drawbacks in the current semantic measures libraries, especially the performance and scalability, as well as the evaluation of new methods and the replication of most previous methods. The reproducible experiments introduced herein are encouraged by the lack of a set of large, self-contained and easily reproducible experiments with the aim of replicating and confirming previously reported results. Likewise, the WNSimRep v1 dataset is motivated by the discovery of several contradictory results and difficulties in reproducing previously reported methods and experiments. PosetHERep proposes a memory-efficient representation for taxonomies which linearly scales with the size of the taxonomy and provides an efficient implementation of most taxonomy-based algorithms used by the semantic measures and IC models, whilst HESML provides an open framework to aid research into the area by providing a simpler and more efficient software architecture than the current software libraries. Finally, we prove the outperformance of HESML on the state-of-the-art libraries, as well as the possibility of significantly improving their performance and scalability without caching using PosetHERep .
Juan J. Lastra-Díaz, Ana García-Serrano, Montserrat Batet, Miriam Fernández, Fernando Seabra Chirigati
Inf. Syst.5
2016 Virtual lightweight snapshots for consistent analytics in NoSQL stores
abstract
Increasingly, applications that deal with big data need to run analytics concurrently with updates. But bridging the gap between big and fast data is challenging: most of these applications require analytics' results that are fresh and consistent, but without impacting system latency and throughput. We propose virtual lightweight snapshots (VLS), a mechanism that enables consistent analytics without blocking incoming updates in NoSQL stores. VLS requires neither native support for database versioning nor a transaction manager. Besides, it is storage-efficient, keeping additional versions of records only when needed to guarantee consistency, and sharing versions across multiple concurrent snapshots. We describe an implementation of VLS in MongoDB and present a detailed experimental evaluation which shows that it supports consistency for analytics with small impact on query evaluation time, update throughput, and latency.
Fernando Seabra Chirigati, Jérôme Siméon, Martin Hirzel, Juliana Freire
ICDE1
2016 Data Polygamy: The Many-Many Relationships among Urban Spatio-Temporal Data Sets
abstract
The increasing ability to collect data from urban environments, coupled with a push towards openness by governments, has resulted in the availability of numerous spatio-temporal data sets covering diverse aspects of a city. Discovering relationships between these data sets can produce new insights by enabling domain experts to not only test but also generate hypotheses. However, discovering these relationships is difficult. First, a relationship between two data sets may occur only at certain locations and/or time periods. Second, the sheer number and size of the data sets, coupled with the diverse spatial and temporal scales at which the data is available, presents computational challenges on all fronts, from indexing and querying to analyzing them. Finally, it is non-trivial to differentiate between meaningful and spurious relationships. To address these challenges, we propose Data Polygamy, a scalable topology-based framework that allows users to query for statistically significant relationships between spatio-temporal data sets. We have performed an experimental evaluation using over 300 spatial-temporal urban data sets which shows that our approach is scalable and effective at identifying interesting relationships.
Fernando Seabra Chirigati, Harish Doraiswamy, Theodoros Damoulas, Juliana Freire
SIGMOD Conference1
2016 ReproZip: Computational Reproducibility With Ease
abstract
We present ReproZip, the recommended packaging tool for the SIGMOD Reproducibility Review. ReproZip was designed to simplify the process of making an existing computational experiment reproducible across platforms, even when the experiment was put together without reproducibility in mind. The tool creates a self-contained package for an experiment by automatically tracking and identifying all its required dependencies. The researcher can share the package with others, who can then use ReproZip to unpack the experiment, reproduce the findings on their favorite operating system, as well as modify the original experiment for reuse in new research, all with little effort. The demo will consist of examples of non-trivial experiments, showing how these can be packed in a Linux machine and reproduced on different machines and operating systems. Demo visitors will also be able to pack and reproduce their own experiments.
Fernando Seabra Chirigati, Rémi Rampin, Dennis E. Shasha, Juliana Freire
SIGMOD Conference1
2016 A collaborative approach to computational reproducibility
Fernando Seabra Chirigati, Rebecca Capone, Rémi Rampin, Juliana Freire, Dennis E. Shasha
Inf. Syst.1
2016 Reproducible experiments on dynamic resource allocation in cloud data centers
Andreas Wolke, Martin Bichler, Fernando Seabra Chirigati, Vicky Rampin
Inf. Syst.3
2016 Knowledge Exploration using Tables on the Web
abstract
The increasing popularity of mobile device usage has ushered in many features in modern search engines that help users with various information needs. One of those needs is Knowledge Exploration, where related documents are returned in response to a user query, either directly through right-hand side knowledge panels or indirectly through navigable sections underneath individual search results. Existing knowledge exploration features have relied on a combination of Knowledge Bases and query logs. In this paper, we propose Knowledge Carousels of two modalities, namely sideways and downwards, that facilitate exploration of IS-A and HAS-A relationships, respectively, with regard to an entity-seeking query, based on leveraging the large corpus of tables on the Web. This brings many technical challenges, including associating correct carousels with the search entity, selecting the best carousel from the candidates, and finding titles that best describe the carousel. We describe how we address these challenges and also experimentally demonstrate through user studies that our approach produces better result sets than baseline approaches.
Fernando Seabra Chirigati, Flip Korn, You Wu 0001, Cong Yu 0001, Hao Zhang 0010
Proc. VLDB Endow.1
2014 The More the Merrier: Efficient Multi-Source Graph Traversal
abstract
Graph analytics on social networks, Web data, and communication networks has been widely used in a plethora of applications. Many graph analytics algorithms are based on breadth-first search (BFS) graph traversal, which is not only time-consuming for large datasets but also involves much redundant computation when executed multiple times from different start vertices. In this paper, we propose Multi-Source BFS (MS-BFS), an algorithm that is designed to run multiple concurrent BFSs over the same graph on a single CPU core while scaling up as the number of cores increases. MS-BFS leverages the properties of small-world networks , which apply to many real-world graphs, and enables efficient graph traversal that: (i) shares common computation across concurrent BFSs; (ii) greatly reduces the number of random memory accesses; and (iii) does not incur synchronization costs. We demonstrate how a real graph analytics application---all-vertices closeness centrality---can be efficiently solved with MS-BFS. Furthermore, we present an extensive experimental evaluation with both synthetic and real datasets, including Twitter and Wikipedia, showing that MS-BFS provides almost linear scalability with respect to the number of cores and excellent scalability for increasing graph sizes, outperforming state-of-the-art BFS algorithms by more than one order of magnitude when running a large number of BFSs.
Manuel Then, Moritz Kaufmann, Fernando Seabra Chirigati, Tuan-Anh Hoang-Vu, Alfons Kemper, Thomas Neumann 0001, Huy T. Vo
Proc. VLDB Endow.3
2013 Packing experiments for sharing and publication
abstract
Reproducibility is a core component of the scientific process. Revisiting and reusing past results allow science to move forward - "standing on the shoulders of giants", as Newton once said. An impediment to the adoption of computational reproducibility is that authors find it difficult to generate a compendium that encompasses all the required components to correctly reproduce their experiments. Even when a compendium is available, reviewers and readers may have difficulties in verifying the results on platforms different from the ones where the experiments were originally run. As a step towards simplifying the process of creating reproducible experiments, we have developed ReproZip, a tool that automatically captures the provenance of experiments and packs all the necessary files, library dependencies and variables to reproduce the results. Reviewers can then unpack and run the experiments without having to install any additional software. We will demonstrate real use cases for ReproZip, how packages are created, and how reviewers can validate and explore experiments.
Fernando Seabra Chirigati, Dennis E. Shasha, Juliana Freire
SIGMOD Conference1
2013 Chiron: a parallel engine for algebraic scientific workflows
abstract
SUMMARY Large‐scale scientific experiments based on computer simulations are typically modeled as scientific workflows, which eases the chaining of different programs. These scientific workflows are defined, executed, and monitored by scientific workflow management systems (SWfMS). As these experiments manage large amounts of data, it becomes critical to execute them in high‐performance computing environments, such as clusters, grids, and clouds. However, few SWfMS provide parallel support. The ones that do so are usually labor‐intensive for workflow developers and have limited primitives to optimize workflow execution. To address these issues, we developed workflow algebra to specify and enable the optimization of parallel execution of scientific workflows. In this paper, we show how the workflow algebra is efficiently implemented in Chiron, an algebraic based parallel scientific workflow engine. Chiron has a unique native distributed provenance mechanism that enables runtime queries in a relational database. We developed two studies to evaluate the performance of our algebraic approach implemented in Chiron; the first study compares Chiron with different approaches, whereas the second one evaluates the scalability of Chiron. By analyzing the results, we conclude that Chiron is efficient in executing scientific workflows, with the benefits of declarative specification and runtime provenance support. Copyright © 2013 John Wiley & Sons, Ltd.
Eduardo S. Ogasawara, Jonas Dias, Vítor Silva 0003, Fernando Seabra Chirigati, Daniel de Oliveira 0001, Fábio Porto 0001, Patrick Valduriez, Marta Mattoso
Concurr. Comput. Pract. Exp.4