A classic data structure problem is to preprocess a string T of length n so that, given a query q, we can quickly find all substrings of T with Hamming distance at most k from the query string. Variants of this problem have seen significant research both in theory and in practice. For a wide parameter range, the best worst-case bounds are achieved by the “CGL tree” (Cole, Gottlieb, Lewenstein 2004), which achieves query time roughly Õ(|q| + logk n + # occ), where # occ is the size of the output, and space O(nlogk n). The CGL Tree space was recently improved to O(n logk−1 n) (Kociumaka, Radoszewski 2026).

Approximate nearest neighbor search (ANN) data structures have widespread applications in machine learning, computational biology, and text processing. The goal of ANN is to preprocess a set S so that, given a query q, we can find a point y whose distance from q approximates the smallest distance from q to any point in S. For most distance functions, the best-known ANN bounds for high-dimensional point sets are obtained using techniques based on locality-sensitive hashing (LSH). Unfortunately, space efficiency is a major challenge for LSH-based data structures. Classic LSH techniques require a very large amount of space, oftentimes polynomial in |S|. A long line of work has developed intricate techniques to reduce this space usage, but these techniques suffer from downsides: they must be hand tailored to each specific LSH, are often complicated, and their space reduction comes at the cost of significantly increased query times. In this paper we explore a new way to improve the space efficiency of LSH using function inversion techniques, originally developed in (Fiat and Naor 2000). We begin by describing how function inversion can be used to improve LSH data structures. This gives a fairly simple, black box method to reduce LSH space usage. Then, we give a data structure that leverages function inversion to improve the query time of the best known near-linear space data structure for approximate nearest neighbor search under Euclidean distance: the ALRW data structure of (Andoni, Laarhoven, Razenshteyn, and Waingarten 2017). ALRW was previously shown to be optimal among "list-of-points" data structures for both Euclidean and Manhattan ANN; thus, in addition to giving improved bounds, our results imply that list-of-points data structures are not optimal for Euclidean or Manhattan ANN .

This paper leverages the framework of algorithms-with-predictions to design data structures for two fundamental dynamic graph problems: incremental topological ordering and cycle detection. In these problems, the input is a directed graph on $n$ nodes, and the $m$ edges arrive one by one. The data structure must maintain a topological ordering of the vertices at all times and detect if the newly inserted edge creates a cycle. The theoretically best worst-case algorithms for these problems have high update cost (polynomial in $n$ and $m$). In practice, greedy heuristics (that recompute the solution from scratch each time) perform well but can have high update cost in the worst case. In this paper, we bridge this gap by leveraging predictions to design a learned new data structure for the problems. Our data structure guarantees consistency, robustness, and smoothness with respect to predictions—that is, it has the best possible running time under perfect predictions, never performs worse than the best-known worst-case methods, and its running time degrades smoothly with the prediction error. Moreover, we demonstrate empirically that predictions, learned from a very small training dataset, are sufficient to provide significant speed-ups on real datasets.

In a large, parallel dictionary, performance is dominated by the cache efficiency of its database operations, analyzed theoretically in the DAM model. Write-optimized dictionaries (WODs) are a class of cache-efficient data structures that buffer updates and apply them in batches to optimize the amortized update cost in the DAM model.

A growing line of work shows how learned predictions can be used to break through worst-case barriers to improve the running time of an algorithm. However, incorporating predictions into data structures with strong theoretical guarantees remains underdeveloped. This paper takes a step in this direction by showing that predictions can be leveraged in the fundamental online list labeling problem. In the problem, $n$ items arrive over time and must be stored in sorted order in an array of size $\Theta(n)$. The array slot of an element is its label and the goal is to maintain sorted order while minimizing the total number of elements moved (i.e., relabeled). We design a new list labeling data structure and bound its performance in two models. In the worst-case learning-augmented model, we give guarantees in terms of the error in the predictions. Our data structure provides strong guarantees: it is optimal for any prediction error and guarantees the best-known worst-case bound even when the predictions are entirely erroneous. We also consider a stochastic error model and bound the performance in terms of the expectation and variance of the error. Finally, the theoretical results are demonstrated empirically. In particular, we show that our data structure has strong performance on real temporal data sets where predictions are constructed from elements that arrived in the past, as is typically done in a practical use case.

Filters are fast, small and approximate set membership data structures. They are often used to filter out expensive accesses to a remote set S for negative queries (that is, a query x not in S). Filters have one-sided errors: on a negative query, a filter may say "present" with a tunable false-positve probability of epsilon. Correctness is traded for space: filters only use log (1/ε) + O(1) bits per element. The false-positive guarantees of most filters, however, hold only for a single query. In particular, if x is a false positive of a filter, a subsequent query to x is a false positive with probability 1, not epsilon. With this in mind, recent work has introduced the notion of an adaptive filter. A filter is adaptive if each query has false positive epsilon, regardless of what queries were made in the past. This requires "fixing" false positives as they occur. Adaptive filters not only provide strong false positive guarantees in adversarial environments but also improve performance on query practical workloads by eliminating repeated false positives. Existing work on adaptive filters falls into two categories. First, there are practical filters based on cuckoo filters that attempt to fix false positives heuristically, without meeting the adaptivity guarantee. Meanwhile, the broom filter is a very complex adaptive filter that meets the optimal theoretical bounds. In this paper, we bridge this gap by designing a practical, provably adaptive filter: the telescoping adaptive filter. We provide theoretical false-positive and space guarantees of our filter, along with empirical results where we compare its false positive performance against state-of-the-art filters. We also test the throughput of our filters, showing that they achieve comparable performance to similar non-adaptive filters.

Edit distance similarity search, also called approximate pattern matching, is a fundamental problem with widespread database applications. The goal of the problem is to preprocess n strings of length d, to quickly answer queries q of the form: if there is a database string within edit distance r of q, return a database string within edit distance cr of q. Previous approaches to this problem either rely on very large (superconstant) approximation ratios c, or very small search radii r. Outside of a narrow parameter range, these solutions are not competitive with trivially searching through all n strings. In this work we give a simple and easy-to-implement hash function that can quickly answer queries for a wide range of parameters. Specifically, our strategy can answer queries in time Õ(d3^rn^{1/c}). The best known practical results require c ≫ r to achieve any correctness guarantee; meanwhile, the best known theoretical results are very involved and difficult to implement, and require query time that can be loosely bounded below by 24^r. Our results significantly broaden the range of parameters for which there exist nontrivial theoretical bounds, while retaining the practicality of a locality-sensitive hash function.

An approximate membership query data structure (AMQ)-such as a Bloom, quotient, or cuckoo filter-maintains a compact, probabilistic representation of a set S of keys from a universe U. It supports lookups and inserts. Some AMQs also support deletes. A query for x ∈ S returns PRESENT. A query for x ∉ S returns PRESENT with a tunable false-positive probability ε, and otherwise returns ABSENT. AMQs are widely used to speed up dictionaries that are stored remotely (e.g., on disk or across a network). The AMQ is stored locally (e.g., in memory). The remote dictionary is only accessed when the AMQ returns PRESENT. Thus, the primary performance metric of an AMQ is how often it returns ABSENT for negative queries. Existing AMQs offer weak guarantees on the number of false positives in a sequence of queries. The false-positive probability ε holds only for a single query. It is easy for an adversary to drive an AMQ's false-positive rate towards 1 by simply repeating false positives. This paper shows what it takes to get strong guarantees on the number of false positives. We say that an AMQ is adaptive if it guarantees a false-positive probability of ε for every query, regardless of answers to previous queries. We establish upper and lower bounds for adaptive AMQs. Our lower bound shows that it is impossible to build a small adaptive AMQ, even when the AMQ is immediately told whenever a query is a false positive. On the other hand, we show that it is possible to maintain an AMQ that uses the same amount of local space as a non-adaptive AMQ (up to lower order terms), performs all queries and updates in constant time, and guarantees that each negative query to the dictionary accesses remote storage with probability ε, independent of the results of past queries. Thus, we show that adaptivity can be achieved effectively for free.

Set similarity join, as well as the corresponding indexing problem set similarity search, are fundamental primitives for managing noisy or uncertain data. For example, these primitives can be used in data cleaning to identify different representations of the same object. In many cases one can represent an object as a sparse 0-1 vector, or equivalently as the set of nonzero entries in such a vector. A set similarity join can then be used to identify those pairs that have an exceptionally large dot product (or intersection, when viewed as sets). We choose to focus on identifying vectors with large Pearson correlation, but results extend to other similarity measures. In particular, we consider the indexing problem of identifying correlated vectors in a set S of vectors sampled from 0,1d. Given a query vector y and a parameter alpha in (0,1), we need to search for an alpha-correlated vector x in a data structure representing the vectors of S. This kind of similarity search has been intensely studied in worst-case (non-random data) settings. Existing theoretically well-founded methods for set similarity search are often inferior to heuristics that take advantage of skew in the data distribution, i.e., widely differing frequencies of 1s across the d dimensions. The main contribution of this paper is to analyze the set similarity problem under a random data model that reflects the kind of skewed data distributions seen in practice, allowing theoretical results much stronger than what is possible in worst-case settings. Our indexing data structure is a recursive, data-dependent partitioning of vectors inspired by recent advances in set similarity search. Previous data-dependent methods do not seem to allow us to exploit skew in item frequencies, so we believe that our work sheds further light on the power of data dependence.

In sensitive applications, machines need to be periodically calibrated to ensure that they run to high standards. Creating an efficient schedule on these machines requires attention to two metrics: ensuring good throughput of the jobs, and ensuring that not too much cost is spent on machine calibration. In this paper we examine flow time as a metric for scheduling with calibrations. While previous papers guaranteed that jobs would meet a certain deadline, we relax that constraint to a tradeoff: we want to balance how long the average job waits with how many costly calibrations we need to perform.

Interactive proofs model a world where a verifier delegates computation to an untrustworthy prover, verifying the prover's claims before accepting them. These proofs have applications to delegation of computation, probabilistically checkable proofs, crowdsourcing, and more.

We present history-independent alternatives to a B-tree, the primary indexing data structure used in databases. A data structure is history independent (HI) if it is impossible to deduce any information by examining the bit representation of the data structure that is not already available through the API. We show how to build a history-independent cache-oblivious B-tree and a history-independent external-memory skip list. One of the main contributions is a data structure we build on the way---a history-independent packed-memory array (PMA). The PMA supports efficient range queries, one of the most important operations for answering database queries.

Memory efficiency and locality have substantial impact on the performance of programs, particularly when operating on large data sets. Thus, memory- or I/O-efficient algorithms have received significant attention both in theory and practice. The widespread deployment of multicore machines, however, brings new challenges. Specifically, since the memory (RAM) is shared across multiple processes, the effective memory-size allocated to each process fluctuates over time. This paper presents techniques for designing and analyzing algorithms in a cache-adaptive setting, where the RAM available to the algorithm changes over time. These techniques make analyzing algorithms in the cache-adaptive model almost as easy as in the external memory, or DAM model. Our techniques enable us to analyze a wide variety of algorithms --- Master-Method-style algorithms, Akra-Bazzi-style algorithms, collections of mutually recursive algorithms, and algorithms, such as FFT, that break problems of size N into subproblems of size Theta(Nc).

A fundamental challenge for supercomputer architecture is that processors cannot be fed data from DRAM as fast as CPUs can consume it. Therefore, many applications are memory-bandwidth bound. As the number of cores per chip increases, and traditional DDR DRAM speeds stagnate, the problem is only getting worse. A variety of non-DDR 3D memory technologies (Wide I/O 2, HBM) offer higher bandwidth and lower power by stacking DRAM chips on the processor or nearby on a silicon interposer. However, such a packaging scheme cannot contain sufficient memory capacity for a node. It seems likely that future systems will require at least two levels of main memory: high-bandwidth, low-power memory near the processor and low-bandwidth high-capacity memory further away. This near memory will probably not have significantly faster latency than the far memory. This, combined with the large size of the near memory (multiple GB) and power constraints, may make it difficult to treat it as a standard cache. In this paper, we explore some of the design space for a user-controlled multi-level main memory. We present algorithms designed for the heterogeneous bandwidth, using streaming to exploit data locality. We consider algorithms for the fundamental application of sorting. Our algorithms asymptotically reduce memory-block transfers under certain architectural parameter settings. We use and extend Sandia National Laboratories' SST simulation capability to demonstrate the relationship between increased bandwidth and improved algorithmic performance. Memory access counts from simulations corroborate predicted performance. This co-design effort suggests implementing two-level main memory systems may improve memory performance in fundamental applications.

We introduce the cache-adaptive model, which generalizes the external-memory model to apply to environments in which the amount of memory available to an algorithm can fluctuate. The cache-adaptive model applies to operating systems, databases, and other systems where the allocation of memory to processes changes over time. We prove that if an optimal cache-oblivious algorithm has a particular recursive structure, then it is also an optimal cache-adaptive algorithm. Cache-oblivious algorithms having this form include Floyd-Warshall all pairs shortest paths, naïve recursive matrix multiplication, matrix transpose, and Gaussian elimination. While the cache-oblivious sorting algorithm Lazy Funnel Sort does not have this recursive structure, we prove that it is nonetheless optimally cache-adaptive. We also establish that if a cache-oblivious algorithm is optimal on “square”” (well-behaved) memory profiles then, given resource augmentation it is optimal on all memory profiles. We give paging algorithms for the case where the cache size changes dynamically. We prove that LRU with 4-memory and 4-speed augmentation is competitive with optimal. Moreover, Belady's algorithm remains optimal even when the cache size changes. Cache-obliviousness is distinct from cache-adaptivity. We exhibit a cache-oblivious algorithm that is not cache-adaptive and a cache-adaptive algorithm for a problem having no optimal cache-oblivious solution.

Integrated Stockpile Evaluation (ISE) is a program to test nuclear weapons periodically. Tests are performed by machines that may require occasional calibration. These calibrations are expensive, so finding a schedule that minimizes calibrations allows more testing to be done for a given amount of money.