Andrew S. Kanter

dblp:10/7355 · DBLP profile ↗
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15ranked-venue papers
2as first author
7since 2021 · last 2026
0000-0002-4019-7894ORCID · verified

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Applied, interdisciplinary, general and emerging computing · 15 · 2 first-author · 7 since 2021
YearPublicationVenuePosition
2026 Automated Logical Observation Identifiers Names and Codes mapping with biomedical natural language processing models: enabling scalable health information exchange via the Open Concept Lab
abstract
OBJECTIVES: Efficient exchange of health information requires consistent representation of clinical concepts across laboratories, hospitals, and public health systems. LOINC supports this interoperability by standardizing laboratory test codes, but mapping remains difficult when datasets are incomplete, inconsistently formatted, or structurally diverse. These challenges often create a mismatch between algorithmic performance in controlled settings and real-world deployment. This study aimed to develop a biomedical natural language processing (NLP) approach for mapping heterogeneous laboratory test strings to LOINC v2.81 and to compare its performance with established algorithms in the Open Concept Lab (OCL) Mapper. MATERIALS AND METHODS: We implemented a ScispaCy-based pipeline (ScispaCy-LOINC) that identifies clinical entities, links them to UMLS Concept Unique Identifiers, assembles LOINC codes from LOINC parts, and ranks candidates using a weighted scoring system. Overall and ranked performance was evaluated against 2 OCL algorithms, Elasticsearch Keyword Retrieval (OCL-Keyword) and MiniLM Semantic Search (OCL-Semantic), on 2 datasets: MIMIC-IV lab_d_items and a LOINC-mapped subset of the CIEL interface terminology v2025-07-15. RESULTS: In MIMIC-IV, the ScispaCy-LOINC achieved the highest coverage, correctly identifying the LOINC code in 42.3% of cases, outperforming OCL-Keyword (19.5%) and OCL-Semantic (21.4%). In the CIEL dataset, OCL-Semantic achieved the highest coverage (54.4%), followed by OCL-Keyword (46.9%) and ScispaCy-LOINC (28.4%). DISCUSSION: These results indicate that ScispaCy-LOINC is particularly effective for noisier or structurally sparse inputs, whereas OCL-based approaches perform better for more standardized terminologies, highlighting complementary algorithmic strengths. CONCLUSION: ScispaCy-LOINC offers a flexible approach to LOINC mapping and demonstrates complementary strengths relative to existing OCL algorithms. These findings support the development of an integrated framework that combines algorithmic strategies to improve robustness across diverse clinical datasets.
Parvati Naliyatthaliyazchayil, Venkat Ramana Sangam, Joseph Amlung, Andrew S. Kanter, Saptarshi Purkayastha, Jonathan Payne
J. Am. Medical Informatics Assoc.4
2026 Opportunities for informatics to improve patient experiences: observations and reflections of ACMI fellows
abstract
OBJECTIVES: We report on findings from a meeting convened by the American College of Medical Informatics (ACMI) to characterize aspects of the patient experience that could be improved using informatics. MATERIALS AND METHODS: The American College of Medical Informatics fellows were invited to share their experiences as patients and suggest informatics approaches that may improve the patient experience. RESULTS: We identified 4 themes: (1) getting the right care, (2) data sharing and data interoperability, (3) guiding low-cost evaluations, and (4) predictive analytics. DISCUSSION: Despite widespread adoption of health IT, patient experiences remain far from optimal. CONCLUSION: The American College of Medical Informatics fellows identified informatics approaches, applications, and research areas that have the potential to improve patient experiences with health care systems.
Howard R. Strasberg, Edward P. Hoffer, Ross Koppel, Kevin B. Johnson, William M. Tierney, Geoffrey W. Rutledge, Elmer V. Bernstam, Jos Aarts, Marion J. Ball, Douglas S. Bell, Bernd Blobel, Suzanne Boren, Iain E. Buchan, James J. Cimino, Lawrence M. Fagan, James Geller, María Adela Grando, David A. Hanauer, William R. Hogan, Andrew S. Kanter, Bonnie Kaplan, Casimir A. Kulikowski, Albert Lai, David McCallie, Vimla Patel, Wanda Pratt, Sarah Collins Rossetti, Edward H. Shortliffe, Hardeep Singh 0005, Dean F. Sittig, William W. Stead, Kim M. Unertl, Mark G. Weiner, Kai Zheng 0002
J. Am. Medical Informatics Assoc.20
2025 Principles and implementation strategies for equitable and representative academic partnerships in global health informatics research
abstract
OBJECTIVE: Developing equitable, sustainable informatics solutions is key to scalability and long-term success for projects in the global health informatics (GHI) domain. This paper presents key strategies for incorporating principles of health equity in the GHI project lifecycle. MATERIALS AND METHODS: The American Medical Informatics Association (AMIA) GHI Working Group organized a collaborative workshop at the 2023 AMIA Annual Symposium that included the presentation of five case studies of how principles of health equity have been incorporated into projects situated in low-and-middle-income countries and with Indigenous communities in the U.S. and best practices for operationalizing these principles into other informatics projects. RESULTS: We present five principles: (1) Inclusion and Participation in Ethical, Sustainable Collaborations; (2) Engaging Community-Based Participatory Research Approaches; (3) Stakeholder Engagement; (4) Scalability and Sustainability; (5) Representation in Knowledge Creation, along with strategies that informatics researchers may use to incorporate these principles into their work. DISCUSSION: Presented case studies and subsequent focus groups yielded key concepts and strategies to promote health equity that may be operationalized across GHI projects. CONCLUSION: Equitable, sustainable, and scalable GHI projects require intentional integration of community and stakeholder perspectives in project development, implementation, and knowledge creation processes.
Elizabeth A. Campbell, Oliver J. Bear Don't Walk IV, Hamish S. F. Fraser, Judy Gichoya, Kavishwar B. Wagholikar, Andrew S. Kanter, Felix Holl, Sansanee Craig
J. Am. Medical Informatics Assoc.6
2023 Reproducible variability: assessing investigator discordance across 9 research teams attempting to reproduce the same observational study
abstract
OBJECTIVE: Observational studies can impact patient care but must be robust and reproducible. Nonreproducibility is primarily caused by unclear reporting of design choices and analytic procedures. This study aimed to: (1) assess how the study logic described in an observational study could be interpreted by independent researchers and (2) quantify the impact of interpretations' variability on patient characteristics. MATERIALS AND METHODS: Nine teams of highly qualified researchers reproduced a cohort from a study by Albogami et al. The teams were provided the clinical codes and access to the tools to create cohort definitions such that the only variable part was their logic choices. We executed teams' cohort definitions against the database and compared the number of subjects, patient overlap, and patient characteristics. RESULTS: On average, the teams' interpretations fully aligned with the master implementation in 4 out of 10 inclusion criteria with at least 4 deviations per team. Cohorts' size varied from one-third of the master cohort size to 10 times the cohort size (2159-63 619 subjects compared to 6196 subjects). Median agreement was 9.4% (interquartile range 15.3-16.2%). The teams' cohorts significantly differed from the master implementation by at least 2 baseline characteristics, and most of the teams differed by at least 5. CONCLUSIONS: Independent research teams attempting to reproduce the study based on its free-text description alone produce different implementations that vary in the population size and composition. Sharing analytical code supported by a common data model and open-source tools allows reproducing a study unambiguously thereby preserving initial design choices.
Anna Ostropolets, Yasser Albogami, Mitchell Conover, Juan M. Banda, William A. Baumgartner Jr., Clair Blacketer, Priyamvada Desai, Scott L. DuVall, Stephen P. Fortin, James P. Gilbert, Asieh Golozar, Joshua Ide, Andrew S. Kanter, David M. Kern, Chungsoo Kim, Lana Y. H. Lai, Kristine E. Lynch, Evan P. Minty, Maria Inês Neves, Ding Quan Ng, Tontel Obene, Victor Pera, Nicole Pratt, Gowtham Rao, Nadav Rappoport, Ines Reinecke, Paola Saroufim, Azza Shoaibi, Katherine Simon, Marc A. Suchard, Joel N. Swerdel, Erica A. Voss, James Weaver, Linying Zhang, George Hripcsak, Patrick B. Ryan
J. Am. Medical Informatics Assoc.13
2022 Pandemic Planning using Text Analytics on Hospital Outpatient Letters: a Case Study on Covid-19 Shielding for Rheumatology Patients
Meghna Jani, Ghada Alfattni, Maksim Belousov, Michael Cheng, Andrew S. Kanter, William G. Dixon, Goran Nenadic
AMIA6
2022 Normalization of free-text annotated entries increases accuracy of diagnoses coding for quality reporting
Amy L. Loriaux, Ann Phillips, Greg Aldin, Andrew S. Kanter
AMIA4
2022 Exploring the use of a terminology-driven normalization engine as a value-added service provided by a regional health information exchange
Naresh Sundar Rajan, Avery Wallace, Andrew S. Kanter
AMIA3
2020 Low-to-Middle-Income Country (LMIC) National and Regional Responses during Epidemic Situations and COVID-19: The Role of Informatics in Prevention, Preparation, Control, and Management
Theresa A. Cullen, Felix Holl, Mengchun Gong, Andrew S. Kanter, Polun Chang
AMIA4
2018 Validation of the Behavior of a Knowledge Base Implementing Clinical Guidelines for Point-of-Care Antiretroviral Toxicity Monitoring
William Ogallo, Carol Friedman, Andrew S. Kanter
AMIA3
2018 Implementation Science for Global Health Informatics Projects
Yuri Quintana, Paul G. Biondich, Hamish S. F. Fraser, Andrew S. Kanter, John H. Holmes
AMIA4
2016 Using Natural Language Processing and Network Analysis to Develop a Conceptual Framework for Medication Therapy Management Research
William Ogallo, Andrew S. Kanter
AMIA2
2012 A Communicative Landscape of Health Information Needs for Malaria Management in the Millennium Villages Project in Bonsaaso, Ghana
Lorena Carlo, Nadi Kaonga, Richmond Kodie, Olivia Velez, Andrew S. Kanter
AMIA5
2012 The OASIS II Research Project: Evaluating an Sub-Saharan Africa eHealth Architecture
Andrew S. Kanter, Nadi Kaonga, Patricia Mechael, Seth Ohemeng-Dapaah, Olivia Velez, Roxana Cosmaciuc, Eric Akosah, Nicholas Addofoh, Joseph Baah, Muhadili Shemsanga, Killian Mahembe, Patricia Namakula, Julius Ssempiira, Emmanuel Toko, Benjamin Rukundo
AMIA1
2000 Right information, right patient, right time: intelligent content searching supporting point-of-care applications
Andrew S. Kanter, Frank Naeymi-Rad, Iain E. Buchan
AMIA1
2000 The Follow-up note: Format and Requirements, Specifications for the Computerized Medical Record
Kimberly Meyers, Andrew S. Kanter, Régis Charlot, Frank Naeymi-Rad
AMIA2