While structured by social and institutional networks, disease outbreaks are modulated by physical, economical, technological, communication, health, and governmental infrastructures. To systematically reason about the nature of outbreaks, the potential outcomes of media, prophylaxis, and vaccination campaigns, and the relative value of various early warning devices, social context, and infrastructure, must be considered. Numerical models provide a cost-effective ethical system for reasoning about such events. BioWar, a scalable citywide multiagent network numerical model, is described in this paper. BioWar simulates individuals as agents who are embedded in social, health, and professional networks and tracks the incidence of background and maliciously introduced diseases. In addition to epidemiology, BioWar simulates health-care-seeking behaviors, absenteeism patterns, and pharmaceutical purchases, information useful for syndromic and behavioral surveillance algorithms.

We describe a distributed memory parallel Delaunay refinement algorithm for polyhedral domains which can generate meshes containing tetrahedra with circumradius to shortest edge ratio less than 2, as long as the angle separating any two incident segments and/or facets is between 90° and 270° degrees. Input to our implementation is an element--wise partitioned, conforming Delaunay mesh of a restricted polyhedral domain which has been distributed to the processors of a parallel system. The submeshes of the distributed mesh are then independently refined by concurrently inserting new mesh vertices.Our algorithm allows a new mesh vertex to affect both the submesh tetrahedralizations and the submesh interfaces induced by the partitioning. This flexibility is crucial to ensure mesh quality, but it introduces unpredictable and variable latencies due to long delays in gathering remote data required for updating mesh data structures. In our experiments, more than 80% of this latency was masked with computation due to the fine--grained concurrency of our algorithm.Our experiments also show that the algorithm is efficient in practice, even for certain domains whose boundaries do not conform to the theoretical limits imposed by the algorithm. The algorithm we describe is the first step in the development of much more sophisticated guaranteed--quality parallel mesh generation algorithms.

Abstract In this paper, we present the Data Movement and Control Substrate (DMCS), a library which implements low‐latency one‐sided communication primitives for use in parallel adaptive and irregular applications. DMCS is built on top of low‐level, vendor‐specific communication subsystems such as LAPI (Low‐level Application Programme Interface) for IBM SP machines, as well as on widely available message‐passing libraries like MPI for clusters of workstations and PCs. DMCS adds a small overhead to the communication operations provided by the lower communication system. In return, DMCS provides a flexible and easy to understand application program interface for one‐sided communication operations. Furthermore, DMCS is designed so that it can be easily ported and maintained by non‐experts. Copyright © 2002 John Wiley & Sons, Ltd.