EDBT 2026 Demo / reviewers in the wild / expert
Yuyao Zhang 0005
dblp:117/9479-5
· DBLP profile ↗
36ranked-venue papers
3as first author
33since 2021 · last 2026
0000-0001-6706-4867ORCID · conflict
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 19 · 2 first-author · 17 since 2021Graphics, computer vision, multimedia, augmented reality and games · 14 · 1 first-author · 13 since 2021Artificial intelligence and machine learning · 13 · 1 first-author · 12 since 2021Systems, architecture and hardware · 2 · 2 since 2021
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2026 | Zero-shot Implicit Neural Manifold Representation (INMR) for Ultra-high Temporal Resolution Dynamic MRIabstractCapturing accurate dynamic information of moving organs is essential for functional assessment using non-invasive imaging modalities. Achieving high temporal resolution visualization of physiological processes remains a critical challenge in dynamic magnetic resonance imaging (MRI) when reconstructing from extremely limited acquisitions. We introduce an unsupervised zero-shot reconstruction framework combining Implicit Neural Representation (INR) with manifold learning, capable of reconstructing dynamic MRI data at unprecedented temporal resolutions (less than 10 ms per frame for 2D imaging, less than 400 ms per frame for 3D imaging). The framework employs learnable low-dimensional manifold vectors to autonomously capture motion in real time directly from undersampled data, and dynamically condition coordinate-based spatial representations to generate high-fidelity image sequences. Through a novel spatiotemporal coarse-to-fine (C2F) optimization strategy, our method outperforms current state-of-the-art (SOTA) techniques across multiple imaging scenarios, including cardiac, speech and dynamic-contrast-enhanced (DCE) abdominal MRI, demonstrating robust performance under challenging motion patterns and contrast dynamics. The learned manifolds additionally provide intuitive visualization of motion and contrast evolution during imaging. These advances indicate strong clinical potential for applications requiring extreme temporal resolution while maintaining both anatomical and temporal fidelity. Jie Feng 0013, Tian Zeng, Haikun Qi, Yuyao Zhang 0005, Hongjiang Wei |
AAAI | 6 |
| 2026 | Unsupervised Motion-Compensated Decomposition for Cardiac MRI Reconstruction via Neural RepresentationabstractCardiac magnetic resonance (CMR) imaging is widely used to characterize cardiac morphology and function. To accelerate CMR imaging, various methods have been proposed to recover high-quality spatiotemporal CMR images from highly undersampled k-t space data. However, current CMR reconstruction techniques either fail to achieve satisfactory image quality or are restricted by the scarcity of ground truth data, leading to limited applicability in clinical scenarios. In this work, we proposed MoCo‑INR, a new unsupervised method that integrates implicit neural representations (INR) with the conventional motion‑compensated (MoCo) framework. Using the explicit motion modeling and the continuous prior of INRs, our MoCo-INR can produce accurate cardiac motion decomposition and high-quality CMR reconstruction. Moreover, we present a new INR network architecture tailored to the CMR problem, which can greatly stabilize model optimization. Experiments on retrospective (i.e., simulated) datasets demonstrate the superiority of MoCo‑INR over state‑of‑the‑art methods, achieving fast convergence and fine‑detailed reconstructions at ultra‑high acceleration factors (e.g., 20x in VISTA sampling). In addition, evaluations on prospective (i.e., real-acquired) free‑breathing CMR scans highlight its clinical practicality for real‑time imaging. Several ablation studies also confirm the effectiveness of critical components of MoCo-INR. Xuanyu Tian, Lixuan Chen, Qing Wu 0001, Jie Feng 0013, Yuyao Zhang 0005, Hongjiang Wei |
AAAI | 6 |
| 2026 | Unsupervised Multi-Parameter Inverse Solving for Reducing Ring Artifacts in 3D X-Ray CBCTabstractRing artifacts are prevalent in 3D cone-beam computed tomography (CBCT) due to non-ideal responses of X-ray detectors, substantially affecting image quality and diagnostic reliability. Existing state-of-the-art (SOTA) ring artifact reduction (RAR) methods rely on supervised learning with large-scale paired CT datasets. While effective in-domain, supervised methods tend to struggle to fully capture the physical characteristics of ring artifacts, leading to pronounced performance drops in complex real-world acquisitions. Moreover, their scalability to 3D CBCT is limited by high memory demands. In this work, we propose Riner, a new unsupervised RAR method. Based on a theoretical analysis of ring artifact formation, we reformulate RAR as a multi-parameter inverse problem, where the non-ideal responses of X-ray detectors are parameterized as solvable physical variables. Using a new differentiable forward model, Riner can jointly learn the implicit neural representation of artifact-free images and estimate the physical parameters directly from CT measurements, without external training data. Additionally, Riner is memory-friendly due to its ray-based optimization, enhancing its usability in large-scale 3D CBCT. Experiments on both simulated and real-world datasets show Riner outperforms existing SOTA supervised methods. Qing Wu 0001, Hongjiang Wei, Jingyi Yu 0001, Yuyao Zhang 0005 |
AAAI | 4 |
| 2026 | NICE: Neural Implicit Craniofacial Model for Orthognathic Surgery PredictionabstractOrthognathic surgery is a crucial intervention for correcting dentofacial skeletal deformities to enhance occlusal functionality and facial aesthetics. Accurate postoperative facial appearance prediction remains challenging due to the complex nonlinear interactions between skeletal movements and facial soft tissue. Existing biomechanical, parametric models and deep-learning approaches either lack computational efficiency or fail to fully capture these intricate interactions. To address these limitations, we propose Neural Implicit Craniofacial Model (NICE) which employs implicit neural representations for accurate anatomical reconstruction and surgical outcome prediction. NICE comprises a shape module, which employs region-specific implicit Signed Distance Function (SDF) decoders to reconstruct the facial surface, maxilla, and mandible, and a surgery module, which employs region-specific deformation decoders. These deformation decoders are driven by a shared surgical latent code to effectively model the complex, nonlinear biomechanical response of the facial surface to skeletal movements, incorporating anatomical prior knowledge. The deformation decoders output point-wise displacement fields, enabling precise modeling of surgical outcomes. Extensive experiments demonstrate that NICE outperforms current state-of-the-art methods, notably improving prediction accuracy in critical facial regions such as lips and chin, while robustly preserving anatomical integrity. This work provides a clinically viable tool for enhanced surgical planning and patient consultation in orthognathic procedures. Jiawen Yang, Yihui Cao, Xuanyu Tian, Yuyao Zhang 0005, Hongjiang Wei |
AAAI | 4 |
| 2026 | SCOPE-3D: An Energy Efficient Accelerator for Implicit Neural Representation-based Sparse-view Computed Tomography Reconstruction
Haochuan Wan, Xin Li 0245, Qing Wu 0001, Yuhan Gu, Wenyan Su, Yuyao Zhang 0005, Xin Lou 0001 |
ISCAS | 7 |
| 2026 | Free-breathing dynamic MRI reconstruction via joint time-dependent coil sensitivity estimation using implicit neural representation
Jie Feng 0013, Yuyao Zhang 0005, Hongjiang Wei |
Medical Image Anal. | 5 |
| 2026 | Unsupervised highly accelerated 3D multi-parametric MRI reconstruction via low-rank integrated implicit neural representation
Guoyan Lao, Yuyao Zhang 0005, Hongjiang Wei |
Pattern Recognit. | 3 |
| 2026 | A Real-Time Neural Representation via Algorithm-Hardware Synergy for Sparse-View CT ReconstructionabstractSparse-view computed tomography (SVCT) is an advancement in computed tomography (CT) technology that aims to reduce the radiation dose during imaging. Reconstructing high-quality images from sparse-view (SV) projections is an ill-posed inverse problem. Recently, implicit neural representations (INRs) as a self-supervised paradigm for solving underdetermined inverse problems have demonstrated excellent performance in SVCT reconstruction. However, since INR-based approaches rely on subject-specific training, they require a significant investment of time to optimize from scratch. Consequently, previous INR methods have not been able to meet the requisite timeliness of reconstruction. In our work, we propose RTSyner, an algorithm-hardware collaboration framework that facilitates the real-time efficiency of CT reconstruction. On the algorithmic side, we introduce an efficient coordinate-based feature module that exploits the local latent features as a positional external condition, leveraging the limited structural information of corrupted images derived from the sensory domain. By fusing latent features and coordinate information, the model learns a neural representation of the final tomographic image. On the hardware side, we design a dedicated hardware architecture with a customized algorithm flow to improve reconstruction speed and reduce power consumption. Furthermore, we improve the efficiency of model inference through model quantization, which also facilitates the subsequent deployment of hardware. Our extensive experimental results demonstrate that the RTSyner based on neural representation has achieved real-time SVCT reconstruction through the synergistic acceleration of the algorithm and hardware. We further explore its application potential via volume reconstructions under more complex acquisition geometries. Xin Li 0245, Haochuan Wan, Kangjie Long, Qing Wu 0001, Chenhe Du, Xin Lou 0001, Yuyao Zhang 0005 |
IEEE Trans. Neural Networks Learn. Syst. | 9 |
| 2025 | Unsupervised Self-Prior Embedding Neural Representation for Iterative Sparse-View CT ReconstructionabstractEmerging unsupervised implicit neural representation (INR) methods, such as NeRP, NeAT, and SCOPE, have shown great potential in addressing sparse-view computed tomography (SVCT) inverse problems. While these INR-based methods perform well on relatively dense SVCT reconstructions, they struggle to achieve comparable performance with supervised methods in sparser SVCT scenarios and are prone to being affected by noise, limiting their applicability in real clinical settings. Additionally, current methods have not fully explored the use of image domain priors for solving SVCT inverse problems. In this work, we demonstrate that imperfect reconstruction results can provide effective image domain priors for INRs to enhance performance. To leverage this, we introduce Self-prior embedding neural representation (Spener), a novel unsupervised method for SVCT reconstruction that integrates iterative reconstruction algorithms. During each iteration, Spener extracts local image prior features from the previous iteration and embeds them to constrain the solution space. Experimental results on multiple CT datasets show that our unsupervised Spener method achieves performance comparable to supervised state-of-the-art (SOTA) methods on in-domain data while outperforming them on out-of-domain datasets. Moreover, Spener significantly improves the performance of INR-based methods in handling SVCT with noisy sinograms. Xuanyu Tian, Lixuan Chen, Qing Wu 0001, Chenhe Du, Hongjiang Wei, Yuyao Zhang 0005 |
AAAI | 7 |
| 2025 | SVRMamba: Slice-to-Volume Reconstruction from Multiple MRI Stacks with Slice Sequence Guided MambaabstractIn fetal magnetic resonance imaging (MRI), slice-to-volume reconstruction (SVR) involves the computational creation of a 3D volume from multiple stacks of 2D slices. This process is challenging due to slice misalignment and image noise. Current state-of-the-art (SOTA) SVR methods typically employ coarse-to-fine techniques that iteratively refine slice-to-volume motion correction and 3D volume reconstruction. However, both processes are inherently inefficient, making these methods time-consuming and prone to errors. This often results in less robust and accurate outcomes, primarily due to insufficient modeling of the spatial relationships between slices. Typically, 2D fetal MRI slices are acquired using the interleave sequence, which first acquires the odd slices and then the even slices in one stack. To this end, we propose a novel Mamba-based framework called SVRMamba, which integrates slice-to-volume reconstruction with slice sequence-guided state space modeling. Specifically, our approach reformulates Mamba’s unidirectional scanning into a slice sequence-guided odd-even directional scanning method and marks the slice positions using sequence embedding tokens. This enables the network to learn the slice relationships and spatial sequences, enhancing fetal MRI SVR motion correction performance. We further integrate a convolutional neural network (CNN)-based interpolation network that generates a noise-suppressed 3D reconstruction by leveraging the predicted motion for each slice. This framework notably enhances 3D fetal brain SVR, delivering substantial improvements in both reconstruction speed and overall performance. Extensive experiments conducted on various benchmark and clinical datasets demonstrate that SVRMamba significantly outperforms existing SOTA methods, delivering comparable results with a remarkable sixtyfold increase in reconstruction speed. Jiangjie Wu, Hongjiang Wei, Yuyao Zhang 0005 |
AAAI | 3 |
| 2025 | Moner: Motion Correction in Undersampled Radial MRI with Unsupervised Neural RepresentationabstractMotion correction (MoCo) in radial MRI is a particularly challenging problem due to the unpredictability of subject movement. Current state-of-the-art (SOTA) MoCo algorithms often rely on extensive high-quality MR images to pre-train neural networks, which constrains the solution space and leads to outstanding image reconstruction results. However, the need for large-scale datasets significantly increases costs and limits model generalization. In this work, we propose Moner, an unsupervised MoCo method that jointly reconstructs artifact-free MR images and estimates accurate motion from undersampled, rigid motion-corrupted k-space data, without requiring any training data. Our core idea is to leverage the continuous prior of implicit neural representation (INR) to constrain this ill-posed inverse problem, facilitating optimal solutions. Specifically, we integrate a quasi-static motion model into the INR, granting its ability to correct subject's motion. To stabilize model optimization, we reformulate radial MRI reconstruction as a back-projection problem using the Fourier-slice theorem. Additionally, we propose a novel coarse-to-fine hash encoding strategy, significantly enhancing MoCo accuracy. Experiments on multiple MRI datasets show our Moner achieves performance comparable to SOTA MoCo techniques on in-domain data, while demonstrating significant improvements on out-of-domain data. The code is available at: https://github.com/iwuqing/Moner Qing Wu 0001, Chenhe Du, Xuanyu Tian, Jingyi Yu 0001, Yuyao Zhang 0005, Hongjiang Wei |
ICLR | 5 |
| 2025 | Joint coil sensitivity and motion correction in parallel MRI with a self-calibrating score-based diffusion model
Lixuan Chen, Xuanyu Tian, Jiangjie Wu, Ruimin Feng, Guoyan Lao, Yuyao Zhang 0005, Hongen Liao, Hongjiang Wei |
Medical Image Anal. | 6 |
| 2025 | COLLATOR: Consistent spatial-temporal longitudinal atlas construction via implicit neural representation
Lixuan Chen, Xuanyu Tian, Jiangjie Wu, Guoyan Lao, Yuyao Zhang 0005, Hongjiang Wei |
Medical Image Anal. | 5 |
| 2025 | Highly accelerated MRI via implicit neural representation guided posterior sampling of diffusion models
Jiayue Chu, Chenhe Du, Xiyue Lin, Xiaoqun Zhang, Lihui Wang 0002, Yuyao Zhang 0005, Hongjiang Wei |
Medical Image Anal. | 6 |
| 2025 | Coordinate-based neural representation enabling zero-shot learning for fast 3D multiparametric quantitative MRIabstractQuantitative magnetic resonance imaging (qMRI) offers tissue-specific physical parameters with significant potential for neuroscience research and clinical practice. However, lengthy scan times for 3D multiparametric qMRI acquisition limit its clinical utility. Here, we propose SUMMIT, an innovative imaging methodology that includes data acquisition and an unsupervised reconstruction for simultaneous multiparametric qMRI. SUMMIT first encodes multiple important quantitative properties into highly undersampled k-space. It further leverages implicit neural representation incorporated with a dedicated physics model to reconstruct the desired multiparametric maps without needing external training datasets. SUMMIT delivers co-registered T 1 , T 2 , T 2 ∗ , and subvoxel quantitative susceptibility mapping. Extensive simulations, phantom, and in vivo brain imaging demonstrate SUMMIT’s high accuracy. Notably, SUMMIT uniquely unravels microstructural alternations in patients with white matter hyperintense lesions with high sensitivity and specificity. Additionally, the proposed unsupervised approach for qMRI reconstruction also introduces a novel zero-shot learning paradigm for multiparametric imaging applicable to various medical imaging modalities . Guoyan Lao, Ruimin Feng, Haikun Qi, Zhenfeng Lv, Chunlei Liu 0004, Yuyao Zhang 0005, Hongjiang Wei |
Medical Image Anal. | 7 |
| 2025 | 3D Isotropic High-Resolution Fetal Brain MRI Reconstruction From Motion Corrupted Thick Data Based on Physical-Informed Unsupervised LearningabstractHigh-quality 3D fetal brain MRI reconstruction from motion-corrupted 2D slices is crucial for precise clinical diagnosis and advancing our understanding of fetal brain development. This necessitates reliable slice-to-volume registration (SVR) for motion correction and super-resolution reconstruction (SRR) techniques. Traditional approaches have their limitations, but deep learning (DL) offers the potential in enhancing SVR and SRR. However, most of DL methods require large-scale external 3D high-resolution (HR) training datasets, which is challenging in clinical fetal MRI. To address this issue, we propose an unsupervised iterative joint SVR and SRR DL framework for 3D isotropic HR volume reconstruction. Specifically, our method conceptualizes SVR as a function that maps a 2D slice and a 3D target volume to a rigid transformation matrix, aligning the slice to the underlying location within the target volume. This function is parameterized by a convolutional neural network, which is trained by minimizing the difference between the volume slicing at the predicted position and the actual input slice. For SRR, a decoding network embedded within a deep image prior framework, coupled with a comprehensive image degradation model, is used to produce the HR volume. The deep image prior framework offers a local consistency prior to guide the reconstruction of HR volumes. By performing a forward degradation model, the HR volume is optimized by minimizing the loss between the predicted slices and the acquired slices. Experiments on both large-magnitude motion-corrupted simulation data and clinical data have shown that our proposed method outperforms current state-of-the-art fetal brain reconstruction methods. Jiangjie Wu, Lixuan Chen, Xin Li 0245, Taotao Sun, Lihui Wang 0002, Rongpin Wang, Hongjiang Wei, Yuyao Zhang 0005 |
IEEE J. Biomed. Health Informatics | 9 |
| 2025 | Spatiotemporal Implicit Neural Representation for Unsupervised Dynamic MRI ReconstructionabstractSupervised Deep-Learning (DL)-based reconstruction algorithms have shown state-of-the-art results for highly-undersampled dynamic Magnetic Resonance Imaging (MRI) reconstruction. However, the requirement of excessive high-quality ground-truth data hinders their applications due to the generalization problem. Recently, Implicit Neural Representation (INR) has emerged as a powerful DL-based tool for solving the inverse problem by characterizing the attributes of a signal as a continuous function of corresponding coordinates in an unsupervised manner. In this work, we proposed an INR-based method to improve dynamic MRI reconstruction from highly undersampled $\boldsymbol {k}$ -space data, which only takes spatiotemporal coordinates as inputs and does not require any training on external datasets or transfer-learning from prior images. Specifically, the proposed method encodes the dynamic MRI images into neural networks as an implicit function, and the weights of the network are learned from sparsely-acquired ( $\boldsymbol {k}$ , t)-space data itself only. Benefiting from the strong implicit continuity regularization of INR together with explicit regularization for low-rankness and sparsity, our proposed method outperforms the compared state-of-the-art methods at various acceleration factors. E.g., experiments on retrospective cardiac cine datasets show an improvement of 0.6-2.0 dB in PSNR for high accelerations (up to $40.8\times $ ). The high-quality and inner continuity of the images provided by INR exhibit great potential to further improve the spatiotemporal resolution of dynamic MRI. The code is available at: https://github.com/AMRI-Lab/INR_for_DynamicMRI. Jie Feng 0013, Ruimin Feng, Qing Wu 0001, Lixuan Chen, Xin Li 0245, Jingjia Chen, Chunlei Liu 0004, Yuyao Zhang 0005, Hongjiang Wei |
IEEE Trans. Medical Imaging | 11 |
| 2024 | Zero-Shot Low-Field MRI Enhancement via Denoising Diffusion Driven Neural Representation
Xiyue Lin, Chenhe Du, Qing Wu 0001, Xuanyu Tian, Jingyi Yu 0001, Yuyao Zhang 0005, Hongjiang Wei |
MICCAI (7) | 6 |
| 2024 | Neural implicit surface reconstruction of freehand 3D ultrasound volume with geometric constraints
Logiraj Kumaralingam, Shuhang Zhang, Sheng Song, Fayi Zhang, Thanh-Tu Pham, Kumaradevan Punithakumar, Edmond Lou, Yuyao Zhang 0005, Lawrence H. Le |
Medical Image Anal. | 10 |
| 2024 | A subject-specific unsupervised deep learning method for quantitative susceptibility mapping using implicit neural representation
Ruimin Feng, Jie Feng 0013, Qing Wu 0001, Chengxin Ma, Jinsong Wu 0001, Fuhua Yan, Chunlei Liu 0004, Yuyao Zhang 0005, Hongjiang Wei |
Medical Image Anal. | 11 |
| 2024 | Brain Age Prediction Based on Quantitative Susceptibility Mapping Using the Segmentation TransformerabstractThe process of brain aging is intricate, encompassing significant structural and functional changes, including myelination and iron deposition in the brain. Brain age could act as a quantitative marker to evaluate the degree of the individual's brain evolution. Quantitative susceptibility mapping (QSM) is sensitive to variations in magnetically responsive substances such as iron and myelin, making it a favorable tool for estimating brain age. In this study, we introduce an innovative 3D convolutional network named Segmentation-Transformer-Age-Network (STAN) to predict brain age based on QSM data. STAN employs a two-stage network architecture. The first-stage network learns to extract informative features from the QSM data through segmentation training, while the second-stage network predicts brain age by integrating the global and local features. We collected QSM images from 712 healthy participants, with 548 for training and 164 for testing. The results demonstrate that the proposed method achieved a high accuracy brain age prediction with a mean absolute error (MAE) of 4.124 years and a coefficient of determination (R2) of 0.933. Furthermore, the gaps between the predicted brain age and the chronological age of Parkinson's disease patients were significantly higher than those of healthy subjects (P<0.01). We thus believe that using QSM-based predicted brain age offers a more reliable and accurate phenotype, with the potentiality to serve as a biomarker to explore the process of advanced brain aging. Jie Feng 0013, Ruimin Feng, Xiaojun Guan, Yuyao Zhang 0005, Cheng Jin 0005, Hongjiang Wei |
IEEE J. Biomed. Health Informatics | 8 |
| 2024 | IMJENSE: Scan-Specific Implicit Representation for Joint Coil Sensitivity and Image Estimation in Parallel MRIabstractParallel imaging is a commonly used technique to accelerate magnetic resonance imaging (MRI) data acquisition. Mathematically, parallel MRI reconstruction can be formulated as an inverse problem relating the sparsely sampled k-space measurements to the desired MRI image. Despite the success of many existing reconstruction algorithms, it remains a challenge to reliably reconstruct a high-quality image from highly reduced k-space measurements. Recently, implicit neural representation has emerged as a powerful paradigm to exploit the internal information and the physics of partially acquired data to generate the desired object. In this study, we introduced IMJENSE, a scan-specific implicit neural representation-based method for improving parallel MRI reconstruction. Specifically, the underlying MRI image and coil sensitivities were modeled as continuous functions of spatial coordinates, parameterized by neural networks and polynomials, respectively. The weights in the networks and coefficients in the polynomials were simultaneously learned directly from sparsely acquired k-space measurements, without fully sampled ground truth data for training. Benefiting from the powerful continuous representation and joint estimation of the MRI image and coil sensitivities, IMJENSE outperforms conventional image or k-space domain reconstruction algorithms. With extremely limited calibration data, IMJENSE is more stable than supervised calibrationless and calibration-based deep-learning methods. Results show that IMJENSE robustly reconstructs the images acquired at 5× and 6× accelerations with only 4 or 8 calibration lines in 2D Cartesian acquisitions, corresponding to 22.0% and 19.5% undersampling rates. The high-quality results and scanning specificity make the proposed method hold the potential for further accelerating the data acquisition of parallel MRI. Ruimin Feng, Qing Wu 0001, Jie Feng 0013, Huajun She, Chunlei Liu 0004, Yuyao Zhang 0005, Hongjiang Wei |
IEEE Trans. Medical Imaging | 6 |
| 2024 | Carotid Vessel Wall Segmentation Through Domain Aligner, Topological Learning, and Segment Anything Model for Sparse Annotation in MR ImagesabstractMedical image analysis poses significant challenges due to limited availability of clinical data, which is crucial for training accurate models. This limitation is further compounded by the specialized and labor-intensive nature of the data annotation process. For example, despite the popularity of computed tomography angiography (CTA) in diagnosing atherosclerosis with an abundance of annotated datasets, magnetic resonance (MR) images stand out with better visualization for soft plaque and vessel wall characterization. However, the higher cost and limited accessibility of MR, as well as time-consuming nature of manual labeling, contribute to fewer annotated datasets. To address these issues, we formulate a multi-modal transfer learning network, named MT-Net, designed to learn from unpaired CTA and sparsely-annotated MR data. Additionally, we harness the Segment Anything Model (SAM) to synthesize additional MR annotations, enriching the training process. Specifically, our method first segments vessel lumen regions followed by precise characterization of carotid artery vessel walls, thereby ensuring both segmentation accuracy and clinical relevance. Validation of our method involved rigorous experimentation on publicly available datasets from COSMOS and CARE-II challenge, demonstrating its superior performance compared to existing state-of-the-art techniques. Xibao Li, Xi Ouyang, Zhongxiang Ding, Yuyao Zhang 0005, Zhong Xue, Feng Shi 0001, Dinggang Shen |
IEEE Trans. Medical Imaging | 5 |
| 2023 | Unsupervised Polychromatic Neural Representation for CT Metal Artifact ReductionabstractEmerging neural reconstruction techniques based on tomography (e.g., NeRF, NeAT, and NeRP) have started showing unique capabilities in medical imaging. In this work, we present a novel Polychromatic neural representation (Polyner) to tackle the challenging problem of CT imaging when metallic implants exist within the human body. CT metal artifacts arise from the drastic variation of metal's attenuation coefficients at various energy levels of the X-ray spectrum, leading to a nonlinear metal effect in CT measurements. Recovering CT images from metal-affected measurements hence poses a complicated nonlinear inverse problem where empirical models adopted in previous metal artifact reduction (MAR) approaches lead to signal loss and strongly aliased reconstructions. Polyner instead models the MAR problem from a nonlinear inverse problem perspective. Specifically, we first derive a polychromatic forward model to accurately simulate the nonlinear CT acquisition process. Then, we incorporate our forward model into the implicit neural representation to accomplish reconstruction. Lastly, we adopt a regularizer to preserve the physical properties of the CT images across different energy levels while effectively constraining the solution space. Our Polyner is an unsupervised method and does not require any external training data. Experimenting with multiple datasets shows that our Polyner achieves comparable or better performance than supervised methods on in-domain datasets while demonstrating significant performance improvements on out-of-domain datasets. To the best of our knowledge, our Polyner is the first unsupervised MAR method that outperforms its supervised counterparts. The code for this work is available at: https://github.com/iwuqing/Polyner. Qing Wu 0001, Lixuan Chen, Ce Wang 0001, Hongjiang Wei, Shaohua Kevin Zhou, Jingyi Yu 0001, Yuyao Zhang 0005 |
NeurIPS | 7 |
| 2023 | An Energy-Efficient Accelerator for Medical Image Reconstruction From Implicit Neural RepresentationabstractThis work presents an energy-efficient accelerator for medical image reconstruction from implicit neural representation (INR). The accelerator implements an INR-based algorithm to deliver high-quality medical image reconstruction with arbitrary resolution from a compact implicit format. In particular, we propose a dedicated hardware architecture based on an optimized computation flow for the INR-based reconstruction algorithm, which co-designs data reuse and computation load. The proposed architecture takes in the coordinate of the intersection of three scans and outputs all the voxel intensities, minimizing the data movement between on-chip and off-chip. To validate the proposed accelerator, we build a proof-of-concept prototype demonstration system using field programmable gate array (FPGA). We also map our design to 40nm CMOS technology to measure the performance of the proposed accelerator. The implementation results show that, running at 400MHz, the proposed accelerator is capable of processing medical images with$256\times 256$resolution in real-time at 26.3 frames per second (FPS), with a power consumption of only 795 mW. Comparison results show that the performance, as well as the energy efficiency of the proposed accelerator, outperforms the central processing unit (CPU)-based and graphic processing unit (GPU)-based implementations. Chaolin Rao, Qing Wu 0001, Pingqiang Zhou, Jingyi Yu 0001, Yuyao Zhang 0005, Xin Lou 0001 |
IEEE Trans. Circuits Syst. I Regul. Pap. | 5 |
| 2023 | An Arbitrary Scale Super-Resolution Approach for 3D MR Images via Implicit Neural RepresentationabstractHigh Resolution (HR) medical images provide rich anatomical structure details to facilitate early and accurate diagnosis. In magnetic resonance imaging (MRI), restricted by hardware capacity, scan time, and patient cooperation ability, isotropic 3-dimensional (3D) HR image acquisition typically requests long scan time and, results in small spatial coverage and low signal-to-noise ratio (SNR). Recent studies showed that, with deep convolutional neural networks, isotropic HR MR images could be recovered from low-resolution (LR) input via single image super-resolution (SISR) algorithms. However, most existing SISR methods tend to approach scale-specific projection between LR and HR images, thus these methods can only deal with fixed up-sampling rates. In this paper, we propose ArSSR, an Arbitrary Scale Super-Resolution approach for recovering 3D HR MR images. In the ArSSR model, the LR image and the HR image are represented using the same implicit neural voxel function with different sampling rates. Due to the continuity of the learned implicit function, a single ArSSR model is able to achieve arbitrary and infinite up-sampling rate reconstructions of HR images from any input LR image. Then the SR task is converted to approach the implicit voxel function via deep neural networks from a set of paired HR and LR training examples. The ArSSR model consists of an encoder network and a decoder network. Specifically, the convolutional encoder network is to extract feature maps from the LR input images and the fully-connected decoder network is to approximate the implicit voxel function. Experimental results on three datasets show that the ArSSR model can achieve state-of-the-art SR performance for 3D HR MR image reconstruction while using a single trained model to achieve arbitrary up-sampling scales. Qing Wu 0001, Yawen Sun, Hongjiang Wei, Jingyi Yu 0001, Yuyao Zhang 0005 |
IEEE J. Biomed. Health Informatics | 7 |
| 2022 | Node-aligned Graph Convolutional Network for Whole-slide Image Representation and ClassificationabstractThe large-scale whole-slide images (WSIs) facilitate the learning-based computational pathology methods. However, the gigapixel size of WSIs makes it hard to train a conventional model directly. Current approaches typically adopt multiple-instance learning (MIL) to tackle this problem. Among them, MIL combined with graph convolutional network (GCN) is a significant branch, where the sampled patches are regarded as the graph nodes to further discover their correlations. However, it is difficult to build correspondence across patches from different WSIs. Therefore, most methods have to perform non-ordered node pooling to generate the bag-level representation. Direct non-ordered pooling will lose much structural and contextual information, such as patch distribution and heterogeneous patterns, which is critical for WSI representation. In this paper, we propose a hierarchical global-to-local clustering strategy to build a Node-Aligned GCN (NAGCN) to represent WSI with rich local structural information as well as global distribution. We first deploy a global clustering operation based on the instance features in the dataset to build the correspondence across different WSIs. Then, we perform a local clustering-based sampling strategy to select typical instances belonging to each cluster within the WSI. Finally, we employ the graph convolution to obtain the representation. Since our graph construction strategy ensures the alignment among different WSIs, WSI-level representation can be easily generated and used for the subsequent classification. The experiment results on two cancer subtype classification datasets demonstrate our method achieves better performance compared with the state-of-the-art methods. Yonghang Guan, Jun Zhang 0018, Kuan Tian, Sen Yang 0006, Pei Dong, Jinxi Xiang, Wei Yang 0032, Junzhou Huang, Yuyao Zhang 0005, Xiao Han 0011 |
CVPR | 9 |
| 2022 | Noise2SR: Learning to Denoise from Super-Resolved Single Noisy Fluorescence Image
Xuanyu Tian, Qing Wu 0001, Hongjiang Wei, Yuyao Zhang 0005 |
MICCAI (6) | 4 |
| 2022 | Regularized Asymmetric Susceptibility Tensor Imaging in the Human Brain in VivoabstractSusceptibility tensor imaging (STI) is a promising tool for studying orientation-dependent tissue magnetic susceptibility and for mapping white matter fiber orientations complementary to diffusion tensor imaging (DTI). However, the limited head rotation range within modern head coils for data acquisition makes in vivo STI reconstruction ill-conditioned. Conventional STI reconstruction method is usually vulnerable to noise and requires sufficiently large head rotations to solve this ill-conditioned inverse problem. In this study, based on the recently proposed asymmetric STI (aSTI) model, a new method termed aSTI+ was proposed to improve in vivo STI reconstruction by enforcing isotropic susceptibility tensor inside cerebrospinal fluid (CSF) and applying morphology constraint in white matter. Experimental results showed superior performance of the proposed method with reduced noise, improved tissue contrast and better fiber orientation estimation over previous methods. Thus aSTI+ may promote in vivo human brain STI studies on white matter and myelin-related brain diseases. Steven Cao, Xu Li 0003, Ruimin Feng, Yuyao Zhang 0005, Chunlei Liu 0004, Hongjiang Wei |
IEEE J. Biomed. Health Informatics | 6 |
| 2022 | NIMBLE: a non-rigid hand model with bones and musclesabstractEmerging Metaverse applications demand reliable, accurate, and photorealistic reproductions of human hands to perform sophisticated operations as if in the physical world. While real human hand represents one of the most intricate coordination between bones, muscle, tendon, and skin, state-of-the-art techniques unanimously focus on modeling only the skeleton of the hand. In this paper, we present NIMBLE, a novel parametric hand model that includes the missing key components, bringing 3D hand model to a new level of realism. We first annotate muscles, bones and skins on the recent Magnetic Resonance Imaging hand (MRI-Hand) dataset [Li et al. 2021] and then register a volumetric template hand onto individual poses and subjects within the dataset. NIMBLE consists of 20 bones as triangular meshes, 7 muscle groups as tetrahedral meshes, and a skin mesh. Via iterative shape registration and parameter learning, it further produces shape blend shapes, pose blend shapes, and a joint regressor. We demonstrate applying NIMBLE to modeling, rendering, and visual inference tasks. By enforcing the inner bones and muscles to match anatomic and kinematic rules, NIMBLE can animate 3D hands to new poses at unprecedented realism. To model the appearance of skin, we further construct a photometric HandStage to acquire high-quality textures and normal maps to model wrinkles and palm print. Finally, NIMBLE also benefits learning-based hand pose and shape estimation by either synthesizing rich data or acting directly as a differentiable layer in the inference network. Longwen Zhang, Zesong Qiu, Yingwenqi Jiang, Nianyi Li, Yuexin Ma, Yuyao Zhang 0005, Lan Xu 0003, Jingyi Yu 0001 |
ACM Trans. Graph. | 7 |
| 2022 | SCULPTOR: Skeleton-Consistent Face Creation Using a Learned Parametric GeneratorabstractRecent years have seen growing interest in 3D human face modeling due to its wide applications in digital human, character generation and animation. Existing approaches overwhelmingly emphasized on modeling the exterior shapes, textures and skin properties of faces, ignoring the inherent correlation between inner skeletal structures and appearance. In this paper, we present SCULPTOR, 3D face creations with Skeleton Consistency Using a Learned Parametric facial generaTOR , aiming to facilitate the easy creation of both anatomically correct and visually convincing face models via a hybrid parametric-physical representation. At the core of SCULPTOR is LUCY, the first large-scale shape-skeleton face dataset in collaboration with plastic surgeons. Named after the fossils of one of the oldest known human ancestors, our LUCY dataset contains high-quality Computed Tomography (CT) scans of the complete human head before and after orthognathic surgeries, which are critical for evaluating surgery results. LUCY consists of 144 scans of 72 subjects (31 male and 41 female), where each subject has two CT scans taken pre- and post-orthognathic operations. Based on our LUCY dataset, we learned a novel skeleton consistent parametric facial generator, SCULPTOR, which can create unique and nuanced facial features that help define a character and at the same time maintain physiological soundness. Our SCULPTOR jointly models the skull, face geometry and face appearance under a unified data-driven framework by separating the depiction of a 3D face into shape blend shape, pose blend shape and facial expression blend shape. SCULPTOR preserves both anatomic correctness and visual realism in facial generation tasks compared with existing methods. Finally, we showcase the robustness and effectiveness of SCULPTOR in various fancy applications unseen before, like archaeological skeletal facial completion, bone-aware character fusion, skull inference from images, face generation with lipo-Level change and facial animations, etc. Zesong Qiu, Dongming He, Qixuan Zhang, Longwen Zhang, Jingya Wang 0001, Lan Xu 0003, Yuyao Zhang 0005, Jingyi Yu 0001 |
ACM Trans. Graph. | 10 |
| 2021 | PIANO: A Parametric Hand Bone Model from Magnetic Resonance ImagingabstractHand modeling is critical for immersive VR/AR, action understanding, or human healthcare. Existing parametric models account only for hand shape, pose, or texture, without modeling the anatomical attributes like bone, which is essential for realistic hand biomechanics analysis. In this paper, we present PIANO, the first parametric bone model of human hands from MRI data. Our PIANO model is biologically correct, simple to animate, and differentiable, achieving more anatomically precise modeling of the inner hand kinematic structure in a data-driven manner than the traditional hand models based on the outer surface only. Furthermore, our PIANO model can be applied in neural network layers to enable training with a fine-grained semantic loss, which opens up the new task of data-driven fine-grained hand bone anatomic and semantic understanding from MRI or even RGB images. We make our model publicly available. Minye Wu, Yuyao Zhang 0005, Lan Xu 0003, Jingyi Yu 0001 |
IJCAI | 3 |
| 2021 | IREM: High-Resolution Magnetic Resonance Image Reconstruction via Implicit Neural Representation
Qing Wu 0001, Lan Xu 0003, Ruiming Feng, Hongjiang Wei, Qing Yang 0028, Boliang Yu, Xiaozhao Liu, Jingyi Yu 0001, Yuyao Zhang 0005 |
MICCAI (6) | 10 |
| 2017 | Atlas construction of cardiac fiber architecture using a multimodal registration approach
Yuyao Zhang 0005, Hongjiang Wei |
Neurocomputing | 1 |
| 2016 | Consistent Spatial-Temporal Longitudinal Atlas Construction for Developing Infant BrainsabstractBrain atlases are an essential component in understanding the dynamic cerebral development, especially for the early postnatal period. However, longitudinal atlases are rare for infants, and the existing ones are generally limited by their fuzzy appearance. Moreover, since longitudinal atlas construction is typically performed independently over time, the constructed atlases often fail to preserve temporal consistency. This problem is further aggravated for infant images since they typically have low spatial resolution and insufficient tissue contrast. In this paper, we propose a novel framework for consistent spatial-temporal construction of longitudinal atlases for developing infant brain MR images. Specifically, for preserving structural details, the atlas construction is performed in spatial-temporal wavelet domain simultaneously. This is achieved by a patch-based combination of results from each frequency subband. Compared with the existing infant longitudinal atlases, our experimental results indicate that our approach is able to produce longitudinal atlases with richer structural details and also better longitudinal consistency, thus leading to higher performance when used for spatial normalization of a group of infant brain images. Yuyao Zhang 0005, Feng Shi 0001, Guorong Wu 0001, Li Wang 0026, Pew-Thian Yap, Dinggang Shen |
IEEE Trans. Medical Imaging | 1 |
| 2015 | Space-Frequency Detail-Preserving Construction of Neonatal Brain Atlases
Yuyao Zhang 0005, Feng Shi 0001, Pew-Thian Yap, Dinggang Shen |
MICCAI (2) | 1 |