Demo Data from EDBT 2026 / reviewers in the wild / expert
Quentin Geissmann
dblp:120/7668
· DBLP profile ↗
1ranked-venue papers
0as first author
0since 2021 · last 2016
0000-0001-6546-4306ORCID · reported
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 1
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 2 heaviest of 2, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology
moment closure approximation |
0.2 | 1 | 2016 | MEANS: python package for Moment Expansion Approximation, iNference and Simulation · Bioinform. 2016 |
Bioinformatics and computational biology › systems biology › biochemical reaction network modeling
biochemical network simulation |
0.1 | 1 | 2016 | MEANS: python package for Moment Expansion Approximation, iNference and Simulation · Bioinform. 2016 |
Methods — techniques the papers use, named apart from their topics
parametric moment closure · 0.2moment expansion approximation · 0.2
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2016 | MEANS: python package for Moment Expansion Approximation, iNference and SimulationabstractMOTIVATION: Many biochemical systems require stochastic descriptions. Unfortunately these can only be solved for the simplest cases and their direct simulation can become prohibitively expensive, precluding thorough analysis. As an alternative, moment closure approximation methods generate equations for the time-evolution of the system's moments and apply a closure ansatz to obtain a closed set of differential equations; that can become the basis for the deterministic analysis of the moments of the outputs of stochastic systems. RESULTS: We present a free, user-friendly tool implementing an efficient moment expansion approximation with parametric closures that integrates well with the IPython interactive environment. Our package enables the analysis of complex stochastic systems without any constraints on the number of species and moments studied and the type of rate laws in the system. In addition to the approximation method our package provides numerous tools to help non-expert users in stochastic analysis. AVAILABILITY AND IMPLEMENTATION: https://github.com/theosysbio/means CONTACTS: [email protected] or [email protected] SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online. Sisi Fan, Quentin Geissmann, Eszter Lakatos, Saulius Lukauskas, Angelique Ale, Ann C. Babtie, Paul D. W. Kirk, Michael P. H. Stumpf |
Bioinform. | 2 |