Fangzhou Yao

dblp:123/5999 · DBLP profile ↗
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19ranked-venue papers
5as first author
16since 2021 · last 2026
0000-0002-5085-7841ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 9 · 3 first-author · 9 since 2021Databases, data management, data science and information retrieval · 8 · 1 first-author · 8 since 2021Applied, interdisciplinary, general and emerging computing · 7 · 2 first-author · 5 since 2021Graphics, computer vision, multimedia, augmented reality and games · 4 · 2 first-author · 4 since 2021
YearPublicationVenuePosition
2026 Conversational Learning Diagnosis via Reasoning Multi-Turn Interactive Learning
abstract
Learning diagnosis is a critical task that monitors students' cognitive state during educational activities, with the goal of enhancing learning outcomes. With advancements in language models (LMs), many AI-driven educational studies have shifted towards conversational learning scenarios, where students engage in multi-turn interactive dialogues with tutors. However, conversational learning diagnosis remains underdeveloped, and most existing techniques acquire students' cognitive state through intuitive instructional prompts on LMs to analyze the dialogue text. This direct prompting approach lacks a solid psychological foundation and fails to ensure the reliability of the generated analytical text. In this study, we introduce ParLD, a preview-analyze-reason framework for conversational learning diagnosis, which leverages multi-agent collaboration to diagnose students' cognitive state over multiple dialogue turns. Specifically, ParLD comprises main components: (1) Behavior Previewer, which generates a student behavior schema based on previous states and learning content; (2) State Analyzer, which diagnose the tutor-student dialogue and behavior schema to update the cognitive state; and (3) Performance Reasoner, which predicts the student's future responses and provides verifiable feedback to support ParLD's self-reflection with the Chain Reflector. They operate sequentially and iteratively during each interaction turn to diagnose the student’s cognitive state. We conduct experiments to evaluate both performance prediction and tutoring support, emphasizing the effectiveness of ParLD in providing reliable and insightful learning diagnosis.
Fangzhou Yao, Weibo Gao, Qi Liu 0003
AAAI1
2025 Agent4Edu: Generating Learner Response Data by Generative Agents for Intelligent Education Systems
abstract
Personalized learning represents a promising educational strategy within intelligent educational systems, aiming to enhance learners' practice efficiency. However, the scarcity of offline practice response data (e.g., answer correctness) and potential biases in human online practice create a significant gap between offline metrics and the actual online performance of personalized learning services. To address this challenge, we introduce Agent4Edu, a novel personalized learning simulator leveraging recent advancements in human intelligence through large language models (LLMs). Agent4Edu features LLM-powered generative agents equipped with learner profile, memory, and action modules tailored to personalized learning algorithms. The learner profiles are initialized using real-world response data, capturing practice styles and cognitive factors. Inspired by psychology theory, the memory module records practice facts and high-level summaries, integrating reflection mechanisms. The action module supports various behaviors, including exercise understanding, analysis, and response generation. Each agent can interact with personalized learning algorithms, such as computerized adaptive testing, enabling a multifaceted evaluation and enhancement of customized services. Through a comprehensive assessment, we explore the strengths and weaknesses of Agent4Edu, emphasizing the consistency and discrepancies in responses between agents and human learners.
Weibo Gao, Qi Liu 0003, Linan Yue, Fangzhou Yao, Rui Lv, Zheng Zhang 0048, Hao Wang 0076, Zhenya Huang
AAAI4
2025 GraphPrompter: Multi-Stage Adaptive Prompt Optimization for Graph In-Context Learning
abstract
Graph In-Context Learning, with the ability to adapt pre-trained graph models to novel and diverse downstream graphs without updating any parameters, has gained much attention in the community. The key to graph in-context learning is to perform downstream graphs conditioned on chosen prompt examples. Existing methods randomly select subgraphs or edges as prompts, leading to noisy graph prompts and inferior model performance. Additionally, due to the gap between pre-training and testing graphs, when the number of classes in the testing graphs is much greater than that in the training, the in-context learning ability will also significantly deteriorate. To tackle the aforementioned challenges, we develop a multi-stage adaptive prompt optimization method GraphPrompter, which optimizes the entire process of generating, selecting, and using graph prompts for better in-context learning capabilities. Firstly, Prompt Generator introduces a reconstruction layer to highlight the most informative edges and reduce irrelevant noise for graph prompt construction. Furthermore, in the selection stage, Prompt Selector employs the k-nearest neighbors algorithm and pre-trained selection layers to dynamically choose appropriate sam-ples and minimize the influence of irrelevant prompts. Finally, we leverage a Prompt Augmenter with a cache replacement strategy to enhance the generalization capability of the pre-trained model on new datasets. Extensive experiments show that GraphPrompter effectively enhances the in-context learning ability of graph models. On average across all the settings, our approach surpasses the state-of-the-art baselines by over 8 %. Our code is released at https://ithub.com/karin0018/GraphPrompter.
Rui Lv, Zaixi Zhang, Kai Zhang 0038, Qi Liu 0003, Weibo Gao, Jiaxia Yan, Linan Yue, Fangzhou Yao
ICDE9
2025 Denoising Programming Knowledge Tracing with a Code Graph-based Tuning Adaptor
abstract
Programming Knowledge Tracking (PKT) aims to dynamically diagnose learners' mastery levels of programming knowledge based on their coding activities, facilitating more effective and personalized programming education. However, current PKT studies primarily focus on the implicit relationship between code content and knowledge assessment, often overlooking two types of noise signals in long-term programming activities: unwanted signals from unrelated submissions and weak signals from minor modifications. This practical challenge significantly limits model performance and application. To address this issue, we propose Coda, a Code graph-based tuning adaptor designed to enhance existing PKT models by identifying and mitigating the impact of noise. Specifically, Coda first transforms the loose code sequences submitted by each learner into a compact code graph. By leveraging this code graph, unwanted signals can be identified from a semantic similarity perspective. We then apply a cluster-aware GCN to the code graph, which improves the discrimination of weak signals and enables their clustering for identification. Finally, a lightweight yet effective adaptor is incorporated into the PKT task through optimization with two noise feature-based constraints and a navigational regularization term, to correct knowledge states affected by noise. It is worth mentioning that the Coda framework is model-agnostic and can be adapted to most existing PKT solutions. Extensive experimental results on four real-world datasets demonstrate that Coda effectively performs the PKT task in the presence of noisy programming records, outperforming typical baselines.
Weibo Gao, Qi Liu 0003, Rui Li 0093, Yuze Zhao, Hao Wang 0076, Linan Yue, Fangzhou Yao, Zheng Zhang 0048
KDD (1)7
2025 BoxCD: Leveraging Contrastive Probabilistic Box Embedding for Effective and Efficient Learner Modeling
abstract
In digital education, Cognitive Diagnosis (CD) is essential for modeling learners' cognitive states, such as problem-solving ability and knowledge proficiency, by analyzing their response data, like answer correctness. However, traditional CD methods struggle with effectiveness and efficiency. They fail to capture the diversity and uncertainty of learners' cognitive states. Additionally, response prediction can be time-consuming. To address these issues, we propose BoxCD, a contrastive probabilistic box embedding model for cognitive diagnosis. BoxCD utilizes high-dimensional axis-aligned hyper-rectangles (boxes) to represent learners and exercises, with the volume of intersecting boxes used to predict learners' responses. This approach effectively captures semantic diversity and uncertainty while enhancing diagnostic effectiveness. To stabilize box embeddings, we integrate contrastive learning objectives with response prediction goals, optimizing the distance between positive and negative samples of learner and exercise boxes to improve uniformity. Additionally, we develop a rank-based response prediction method that leverages the geometric properties of box embeddings to assess learners' response correctness efficiently. Comprehensive experiments on two real-world datasets demonstrate that BoxCD outperforms traditional CD models in effectiveness and efficiency. This showcases its potential to enhance personalized learning in digital education platforms.
Weibo Gao, Qi Liu 0003, Linan Yue, Fangzhou Yao, Zhenya Huang, Zheng Zhang 0048, Rui Lv
WWW4
2025 Empowering Federated Graph Rationale Learning with Latent Environments
abstract
The success of Graph Neural Networks (GNNs) in graph classification has heightened interest in explainable GNNs, particularly through graph rationalization. This method aims to enhance GNNs explainability by identifying subgraph structures (i.e., rationales) that support model predictions. However, existing methods often rely on centralized datasets, posing challenges in scenarios where data privacy is crucial, such as in molecular property prediction. Federated Learning (FL) offers a solution by enabling collaborative model training without sharing raw data. In this context, Federated Graph Rationalization emerges as a promising research direction. However, in each client, the rationalization methods often rely on client-specific shortcuts to compose rationales and make task predictions. Data heterogeneity, characterized by non-IID data across clients, exacerbates this problem, leading to poor prediction performance. To address these challenges, we propose the Environment-aware Data Augmentation (EaDA) method for Federated Graph Rationalization. EaDA comprises two main components: the Environment-aware Rationale Extraction (ERE) module and the Local-Global Alignment (LGA) module. The ERE module employs prototype learning to infer and share abstract environment information across clients, which are then aggregated to form a global environment. This information is used to generate counterfactual samples for local clients, enhancing the robustness of task predictions. The LGA module uses contrastive learning methods to align local and global rationale representations, mitigating performance degradation due to data heterogeneity. Comprehensive experiments on benchmark datasets demonstrate the effectiveness of our approaches. Code is available at https://github.com/yuelinan/Codes-of-EaDA.
Linan Yue, Qi Liu 0003, Yawen Li 0001, Fangzhou Yao, Weibo Gao, Junping Du 0001
WWW4
2025 Learning from shortcut: a shortcut-guided approach for explainable graph learning
Linan Yue, Qi Liu 0003, Ye Liu 0011, Weibo Gao, Fangzhou Yao
Frontiers Comput. Sci.5
2025 Semantic-Aligned Code Summarization: Bridging the Gap Between Code and Natural Language Through Data Flow Analysis
abstract
Code summarization is designed to generate descriptive natural language for code snippets, facilitating understanding and increasing productivity for developers. Previous research often overlooks the semantic connection between code and its natural language description, resulting in a noticeable gap and suboptimal solution. To address this issue, we introduce a semantic-aligned code summarization framework that leverages crucial data flow information from code for semantic analysis, ensuring alignment between code and summaries. Specifically, we utilize a semantic extraction module (SEM) to decipher the meaning of code and align it with natural language through a semantic alignment module. In the SEM, we construct a code graph that includes data flow edges using static program analysis techniques. Then, on this well-constructed code graph, we innovatively adopt a walking algorithm guided by data flow to extract the semantics of the code. This walking algorithm understands code semantics by analyzing the information transfer between variables during the program execution process. In the semantic alignment module, we integrate a contrastive learning loss mechanism for semantic alignment, which cohesively maps the semantic domains of code and natural language into a unified vector space. We further theoretically analyzed that the data-flow-guided walking algorithm can ensure capturing semantically highly related nodes in shorter paths. Extensive experiments on two benchmark datasets demonstrate the efficacy and broad applicability of the framework.
Yuze Zhao, Zhenya Huang, Kai Zhang 0038, Weibo Gao, Qi Liu 0003, Xukai Liu, Fangzhou Yao, Enhong Chen
IEEE Trans. Neural Networks Learn. Syst.7
2024 Zero-1-to-3: Domain-Level Zero-Shot Cognitive Diagnosis via One Batch of Early-Bird Students towards Three Diagnostic Objectives
abstract
Cognitive diagnosis seeks to estimate the cognitive states of students by exploring their logged practice quiz data. It plays a pivotal role in personalized learning guidance within intelligent education systems. In this paper, we focus on an important, practical, yet often underexplored task: domain-level zero-shot cognitive diagnosis (DZCD), which arises due to the absence of student practice logs in newly launched domains. Recent cross-domain diagnostic models have been demonstrated to be a promising strategy for DZCD. These methods primarily focus on how to transfer student states across domains. However, they might inadvertently incorporate non-transferable information into student representations, thereby limiting the efficacy of knowledge transfer. To tackle this, we propose Zero-1-to-3, a domain-level zero-shot cognitive diagnosis framework via one batch of early-bird students towards three diagnostic objectives. Our approach initiates with pre-training a diagnosis model with dual regularizers, which decouples student states into domain-shared and domain-specific parts. The shared cognitive signals can be transferred to the target domain, enriching the cognitive priors for the new domain, which ensures the cognitive state propagation objective. Subsequently, we devise a strategy to generate simulated practice logs for cold-start students through analyzing the behavioral patterns from early-bird students, fulfilling the domain-adaption goal. Consequently, we refine the cognitive states of cold-start students as diagnostic outcomes via virtual data, aligning with the diagnosis-oriented goal. Finally, extensive experiments on six real-world datasets highlight the efficacy of our model for DZCD and its practical application in question recommendation. The code is publicly available at https://github.com/bigdata-ustc/Zero-1-to-3.
Weibo Gao, Qi Liu 0003, Hao Wang 0076, Linan Yue, Haoyang Bi, Yin Gu, Fangzhou Yao, Zheng Zhang 0048, Xin Li 0064, Yuanjing He
AAAI7
2024 FedJudge: Federated Legal Large Language Model
Linan Yue, Qi Liu 0003, Yichao Du, Weibo Gao, Ye Liu 0011, Fangzhou Yao
DASFAA (5)6
2024 Federated Self-Explaining GNNs with Anti-shortcut Augmentations
abstract
Graph Neural Networks (GNNs) have demonstrated remarkable performance in graph classification tasks. However, ensuring the explainability of their predictions remains a challenge. To address this, graph rationalization methods have been introduced to generate concise subsets of the original graph, known as rationales, which serve to explain the predictions made by GNNs. Existing rationalizations often rely on shortcuts in data for prediction and rationale composition. In response, de-shortcut rationalization methods have been proposed, which commonly leverage counterfactual augmentation to enhance data diversity for mitigating the shortcut problem. Nevertheless, these methods have predominantly focused on centralized datasets and have not been extensively explored in the Federated Learning (FL) scenarios. To this end, in this paper, we propose a Federated Graph Rationalization (FedGR) with anti-shortcut augmentations to achieve self-explaining GNNs, which involves two data augmenters. These augmenters are employed to produce client-specific shortcut conflicted samples at each client, which contributes to mitigating the shortcut problem under the FL scenarios. Experiments on real-world benchmarks and synthetic datasets validate the effectiveness of FedGR under the FL scenarios.
Linan Yue, Qi Liu 0003, Weibo Gao, Ye Liu 0011, Kai Zhang 0038, Yichao Du, Li Wang 0014, Fangzhou Yao
ICML8
2024 AdaRD: An Adaptive Response Denoising Framework for Robust Learner Modeling
abstract
Learner modeling is a crucial task in online learning environments, where Cognitive Diagnosis Models (CDMs) are employed to assess learners' knowledge mastery levels based on recorded response logs. However, the prevalence of noise in recorded response data poses significant challenges, including various behaviors such as guess and slip, casual answers, and system-induced errors. The existence of noise degrades the accuracy of diagnosis results and learner performance predictions. In this work, we propose a general framework, Adaptive Response Denoising (AdaRD), designed to salvage CDMs from the influence of noisy learner-exercise responses. AdaRD extends existing CDMs, incorporating primary training for denoised CDMs and auxiliary training for additional denoising support. The primary training employs binary Generalized Cross Entropy (GCE) loss to slow down the large update of learner knowledge states caused by noisy responses. Simultaneously, we utilize the variance of diagnosed knowledge mastery levels between primary and auxiliary diagnosis modules as a criterion to downweight high-variance responses that are likely to be noisy. In this manner, the proposed framework can prune noisy response learning during training, thereby enhancing the accuracy and robustness of CDMs. Extensive experiments on both real-world and synthetic datasets validate AdaRD's effectiveness in mitigating the impact of noisy learner-exercise responses.
Fangzhou Yao, Qi Liu 0003, Linan Yue, Weibo Gao, Jiatong Li 0002, Xin Li 0064, Yuanjing He
KDD1
2024 Collaborative Cognitive Diagnosis with Disentangled Representation Learning for Learner Modeling
abstract
Learners sharing similar implicit cognitive states often display comparable observable problem-solving performances. Leveraging collaborative connections among such similar learners proves valuable in comprehending human learning. Motivated by the success of collaborative modeling in various domains, such as recommender systems, we aim to investigate how collaborative signals among learners contribute to the diagnosis of human cognitive states (i.e., knowledge proficiency) in the context of intelligent education. The primary challenges lie in identifying implicit collaborative connections and disentangling the entangled cognitive factors of learners for improved explainability and controllability in learner Cognitive Diagnosis (CD). However, there has been no work on CD capable of simultaneously modeling collaborative and disentangled cognitive states. To address this gap, we present Coral, a $\underline{Co}$llabo$\underline{ra}$tive cognitive diagnosis model with disentang$\underline{l}$ed representation learning. Specifically, Coral first introduces a disentangled state encoder to achieve the initial disentanglement of learners' states. Subsequently, a meticulously designed collaborative representation learning procedure captures collaborative signals. It dynamically constructs a collaborative graph of learners by iteratively searching for optimal neighbors in a context-aware manner. Using the constructed graph, collaborative information is extracted through node representation learning. Finally, a decoding process aligns the initial cognitive states and collaborative states, achieving co-disentanglement with practice performance reconstructions. Extensive experiments demonstrate the superior performance of Coral, showcasing significant improvements over state-of-the-art methods across several real-world datasets. Our code is available at https://github.com/bigdata-ustc/Coral.
Weibo Gao, Qi Liu 0003, Linan Yue, Fangzhou Yao, Hao Wang 0076, Yin Gu, Zheng Zhang 0048
NeurIPS4
2024 Towards the Identifiability and Explainability for Personalized Learner Modeling: An Inductive Paradigm
abstract
Personalized learner modeling using cognitive diagnosis (CD), which aims to model learners' cognitive states by diagnosing learner traits from behavioral data, is a fundamental yet significant task in many web learning services. Existing cognitive diagnosis models (CDMs) follow theproficiency-response paradigm that views learner traits and question parameters as trainable embeddings and learns them through learner performance prediction. However, we notice that this paradigm leads to the inevitable non-identifiability and explainability overfitting problem, which is harmful to the quantification of learners' cognitive states and the quality of web learning services. To address these problems, we propose an identifiable cognitive diagnosis framework (ID-CDF) based on a novelresponse-proficiency-response paradigm inspired by encoder-decoder models. Specifically, we first devise the diagnostic module of ID-CDF, which leverages inductive learning to eliminate randomness in optimization to guarantee identifiability and captures the monotonicity between overall response data distribution and cognitive states to prevent explainability overfitting. Next, we propose a flexible predictive module for ID-CDF to ensure diagnosis preciseness. We further present an implementation of ID-CDF, i.e., ID-CDM, to illustrate its usability. Extensive experiments on four real-world datasets with different characteristics demonstrate that ID-CDF can effectively address the problems without loss of diagnosis preciseness. Our code is available at https://github.com/CSLiJT/ID-CDF.
Jiatong Li 0002, Qi Liu 0003, Fei Wang 0063, Jiayu Liu 0001, Zhenya Huang, Fangzhou Yao, Linbo Zhu, Yu Su 0002
WWW6
2024 Cooperative Classification and Rationalization for Graph Generalization
abstract
Graph Neural Networks (GNNs) have achieved impressive results in graph classification tasks, but they struggle to generalize effectively when faced with out-of-distribution (OOD) data. Several approaches have been proposed to address this problem. Among them, one solution is to diversify training distributions in vanilla classification by modifying the data environment, yet accessing the environment information is complex. Besides, another promising approach involves rationalization, extracting invariant rationales for predictions. However, extracting rationales is difficult due to limited learning signals, resulting in less accurate rationales and diminished predictions. To address these challenges, in this paper, we propose a Cooperative Classification and Rationalization (C2R) method, consisting of theclassification and therationalization module. Specifically, we first assume that multiple environments are available in theclassification module. Then, we introduce diverse training distributions using an environment-conditional generative network, enabling robust graph representations. Meanwhile, therationalization module employs a separator to identify relevant rationale subgraphs while the remaining non-rationale subgraphs are de-correlated with labels. Next, we align graph representations from theclassification module with rationale subgraph representations using the knowledge distillation methods, enhancing the learning signal for rationales. Finally, we infer multiple environments by gathering non-rationale representations and incorporate them into theclassification module for cooperative learning. Extensive experimental results on both benchmarks and synthetic datasets demonstrate the effectiveness of C2R. Code is available at https://github.com/yuelinan/Codes-of-C2R.
Linan Yue, Qi Liu 0003, Ye Liu 0011, Weibo Gao, Fangzhou Yao
WWW5
2023 Exploiting Non-Interactive Exercises in Cognitive Diagnosis
abstract
Cognitive Diagnosis aims to quantify the proficiency level of students on specific knowledge concepts. Existing studies merely leverage observed historical students-exercise interaction logs to access proficiency levels. Despite effectiveness, observed interactions usually exhibit a power-law distribution, where the long tail consisting of students with few records lacks supervision signals. This phenomenon leads to inferior diagnosis among few records students. In this paper, we propose the Exercise-aware Informative Response Sampling (EIRS) framework to address the long-tail problem. EIRS is a general framework that explores the partial order between observed and unobserved responses as auxiliary ranking-based training signals to supplement cognitive diagnosis. Considering the abundance and complexity of unobserved responses, we first design an Exercise-aware Candidates Selection module, which helps our framework produce reliable potential responses for effective supplementary training. Then, we develop an Expected Ability Change-weighted Informative Sampling strategy to adaptively sample informative potential responses that contribute greatly to model training. Experiments on real-world datasets demonstrate the supremacy of our framework in long-tailed data.
Fangzhou Yao, Qi Liu 0003, Min Hou 0004, Shiwei Tong, Zhenya Huang, Enhong Chen, Jing Sha, Shijin Wang 0001
IJCAI1
2014 CryptVMI: Encrypted Virtual Machine Introspection in the Cloud
abstract
Virtualization techniques are the key in both public and private cloud computing environments. In such environments, multiple virtual instances are running on the same physical machine. The logical isolation between systems makes security assurance weaker than physically isolated systems. Thus, Virtual Machine Introspection techniques become essential to prevent the virtual system from being vulnerable to attacks. However, this technique breaks down the borders of the segregation between multiple tenants, which should be avoided in a public cloud computing environment. In this paper, we focus on building an encrypted Virtual Machine Introspection system, CryptVMI, to address the above concern, especially in a public cloud system. Our approach maintains a query handler on the management node to handle encrypted queries from user clients. We pass the query to the corresponding compute node that holds the virtual instance queried. The introspection application deployed on the compute node processes the query and acquires the encrypted results from the virtual instance for the user. This work shows our design and preliminary implementation of this system.
Fangzhou Yao, Roy H. Campbell
IEEE CLOUD1
2014 VMDedup: Memory De-duplication in Hypervisor
abstract
Virtualization techniques are widely used in cloud computing environments today. Such environments are installed with a large number of similar virtual instances sharing the same physical infrastructure. In this paper, we focus on the memory usage optimization across virtual machines by automatically de-duplicating the memory on per-page basis. Our approach maintains a single copy of the duplicated pages in physical memory using copy-on-write mechanism. Unlike some existing strategies, which are intended only for applications and need user configuration, VMDedup provides an automatic memory de-duplication support within the hypervisor to achieve benefits across operating system code, data as well as application binaries. We have implemented a prototype of this system within the Xen hypervisor to support both para-virtualized and fully-virtualized instances of operating systems.
Furquan Shaikh, Fangzhou Yao, Indranil Gupta, Roy H. Campbell
IC2E2
2012 Independent Principal Component Analysis for biologically meaningful dimension reduction of large biological data sets
abstract
BACKGROUND: A key question when analyzing high throughput data is whether the information provided by the measured biological entities (gene, metabolite expression for example) is related to the experimental conditions, or, rather, to some interfering signals, such as experimental bias or artefacts. Visualization tools are therefore useful to better understand the underlying structure of the data in a 'blind' (unsupervised) way. A well-established technique to do so is Principal Component Analysis (PCA). PCA is particularly powerful if the biological question is related to the highest variance. Independent Component Analysis (ICA) has been proposed as an alternative to PCA as it optimizes an independence condition to give more meaningful components. However, neither PCA nor ICA can overcome both the high dimensionality and noisy characteristics of biological data. RESULTS: We propose Independent Principal Component Analysis (IPCA) that combines the advantages of both PCA and ICA. It uses ICA as a denoising process of the loading vectors produced by PCA to better highlight the important biological entities and reveal insightful patterns in the data. The result is a better clustering of the biological samples on graphical representations. In addition, a sparse version is proposed that performs an internal variable selection to identify biologically relevant features (sIPCA). CONCLUSIONS: On simulation studies and real data sets, we showed that IPCA offers a better visualization of the data than ICA and with a smaller number of components than PCA. Furthermore, a preliminary investigation of the list of genes selected with sIPCA demonstrate that the approach is well able to highlight relevant genes in the data with respect to the biological experiment.IPCA and sIPCA are both implemented in the R package mixomics dedicated to the analysis and exploration of high dimensional biological data sets, and on mixomics' web-interface.
Fangzhou Yao, Jeff Coquery, Kim-Anh Lê Cao
BMC Bioinform.1