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Erika J. Thompson

dblp:124/9465 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2013
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
cancer genomics		 0.212013
VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue · Bioinform. 2013
Bioinformatics and computational biology › genomics › viral genomics
viral integration detection		 0.212013
VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue · Bioinform. 2013

Methods — techniques the papers use, named apart from their topics

next-generation sequencing analysis · 0.2
YearPublicationVenuePosition
2013 VirusSeq: software to identify viruses and their integration sites using next-generation sequencing of human cancer tissue
abstract
SUMMARY: We developed a new algorithmic method, VirusSeq, for detecting known viruses and their integration sites in the human genome using next-generation sequencing data. We evaluated VirusSeq on whole-transcriptome sequencing (RNA-Seq) data of 256 human cancer samples from The Cancer Genome Atlas. Using these data, we showed that VirusSeq accurately detects the known viruses and their integration sites with high sensitivity and specificity. VirusSeq can also perform this function using whole-genome sequencing data of human tissue. AVAILABILITY: VirusSeq has been implemented in PERL and is available at http://odin.mdacc.tmc.edu/∼xsu1/VirusSeq.html. CONTACT: [email protected] SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Yunxin Chen, Erika J. Thompson, Nizar M. Tannir, John N. Weinstein, Xiaoping Su
 Bioinform.3