Joann G. Elmore

dblp:127/5682 · DBLP profile ↗
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18ranked-venue papers
0as first author
8since 2021 · last 2026
0000-0002-7311-6835ORCID · verified

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 10 · 6 since 2021Graphics, computer vision, multimedia, augmented reality and games · 9 · 3 since 2021Artificial intelligence and machine learning · 4 · 1 since 2021
YearPublicationVenuePosition
2026 Artificial intelligence and computer-aided diagnosis in diagnostic decisions: 5 questions for medical informatics and human-computer interface research
abstract
OBJECTIVES: Artificial intelligence (AI) has the potential to transform medical informatics by supporting clinical decision-making, reducing diagnostic errors, and improving workflows and efficiency. However, successful integration of AI-based decision support systems depends on careful consideration of human-AI collaboration, trust, skill maintenance, and automation bias. This work proposes five central questions to guide future research in medical informatics and human-computer interface (HCI). MATERIALS AND METHODS: We focus on AI-based clinical decision support systems, including computer vision algorithms for medical imaging (radiology, pathology), natural language processing for structured and unstructured electronic health record (EHR) data, and rule-based systems. Relevant data modalities include clinician-acquired images, EHR text, and increasingly, patient-generated content in telehealth contexts. We review existing evidence regarding diagnostic errors across specialties, the effectiveness and risks of AI tools in reducing perceptual and interpretive errors, and the human factors influencing diagnostic decision-making in AI-enabled contexts. We synthesize insights from medicine, cognitive science, and HCI to identify gaps in knowledge and propose five key questions for continued research. RESULTS: Diagnostic errors remain common across medicine, with AI offering potential to reduce both perceptual and interpretive errors. However, the impact of AI depends critically on how and when information is presented. Studies indicate that delayed or toggleable cues may outperform immediate ones, but attentional capture, overreliance, and bias remain significant risks. Explainable AI provides transparency but can also bias decisions. Long-term reliance on AI may erode clinician skills, particularly for trainees and in low-prevalence contexts. Historical failures of computer-aided diagnosis in mammography highlight these challenges. DISCUSSION AND CONCLUSION: Effective AI integration requires human-centered and adaptive design. Five central research questions address: (1) what type and format of information AI should provide; (2) when information should be presented; (3) how explainable AI affects diagnostic decisions; (4) how AI influences automation bias and complacency; and (5) the risks of skill decay due to reliance on AI. Each question underscores the importance of balancing efficiency, accuracy, and clinician expertise while mitigating bias and skill degradation. AI holds promise for improving diagnostic accuracy and efficiency, but realizing its potential requires post-deployment evaluation, equitable access, clinician oversight, and targeted training. AI must complement, rather than replace, human expertise, ensuring safe, effective, and sustainable integration into diagnostic decision-making. Addressing these challenges proactively can maximize AI's potential across healthcare and other high-stakes domains.
Tad T. Brunyé, Stephen R. Mitroff, Joann G. Elmore
J. Am. Medical Informatics Assoc.3
2025 PathFinder: A Multi-Modal Multi-Agent System for Medical Diagnostic Decision-Making Applied to Histopathology
abstract
Diagnosing diseases through histopathology whole slide images (WSIs) is fundamental in modern pathology but is challenged by the gigapixel scale and complexity of WSIs. Trained histopathologists overcome this challenge by navigating the WSI, looking for relevant patches, taking notes, and compiling them to produce a final holistic diagnostic. Traditional AI approaches, such as multiple instance learning and transformer-based models, fail short of such a holistic, iterative, multi-scale diagnostic procedure, limiting their adoption in the real-world. We introduce PathFinder, a multi-modal, multi-agent framework that emulates the decision-making process of expert pathologists. PathFinder integrates four AI agents, the Triage Agent, Navigation Agent, Description Agent, and Diagnosis Agent, that collaboratively navigate WSIs, gather evidence, and provide comprehensive diagnoses with natural language explanations. The Triage Agent classifies the WSI as benign or risky; if risky, the Navigation and Description Agents iteratively focus on significant regions, generating importance maps and descriptive insights of sampled patches. Finally, the Diagnosis Agent synthesizes the findings to determine the patient's diagnostic classification. Our Experiments show that PathFinder outperforms state-of-the-art methods in skin melanoma diagnosis by 8% while offering inherent explainability through natural language descriptions of diagnostically relevant patches. Qualitative analysis by pathologists shows that the Description Agent's outputs are of high quality and comparable to GPT-4o. PathFinder is also the first AI-based system to surpass the average performance of pathologists in this challenging melanoma classification task by 9%, setting a new record for efficient, accurate, and interpretable AI-assisted diagnostics in pathology. Data, code and models available at https://pathfinder-dx.github.io/
Fatemeh Ghezloo, Mehmet Saygin Seyfioglu, Rustin Soraki, Wisdom Oluchi Ikezogwo, Beibin Li, Tejoram Vivekanandan, Joann G. Elmore, Ranjay Krishna, Linda G. Shapiro
ICCV7
2025 Assessment of health conditions from patient electronic health record portals vs self-reported questionnaires: an analysis of the INSPIRE study
abstract
OBJECTIVES: Direct electronic access to multiple electronic health record (EHR) systems through patient portals offers a novel avenue for decentralized research. Given the critical value of patient characterization, we sought to compare computable evaluation of health conditions from patient-portal EHR against the traditional self-report. MATERIALS AND METHODS: In the nationwide Innovative Support for Patients with SARS-CoV-2 Infections Registry (INSPIRE) study, which linked self-reported questionnaires with multiplatform patient-portal EHR data, we compared self-reported health conditions across different clinical domains against computable definitions based on diagnosis codes, medications, vital signs, and laboratory testing. We assessed their concordance using Cohen's Kappa and the prognostic significance of differentially captured features as predictors of 1-year all-cause hospitalization risk. RESULTS: Among 1683 participants (mean age 41 ± 15 years, 67% female, 63% non-Hispanic Whites), the prevalence of conditions varied substantially between EHR and self-report (-13.2% to +11.6% across definitions). Compared with comprehensive EHR phenotypes, self-report under-captured all conditions, including hypertension (27.9% vs 16.2%), diabetes (10.1% vs 6.2%), and heart disease (8.5% vs 4.3%). However, diagnosis codes alone were insufficient. The risk for 1-year hospitalization was better defined by the same features from patient-portal EHR (area under the receiver operating curve [AUROC] 0.79) than from self-report (AUROC 0.68). DISCUSSION: EHR-derived computable phenotypes identified a higher prevalence of comorbidities than self-report, with prognostic value of additionally identified features. However, definitions based solely on diagnosis codes often undercaptured self-reported conditions, suggesting a role of broader EHR elements. CONCLUSION: In this nationwide study, patient-portal-derived EHR data enabled extensive capture of patient characteristics across multiple EHR platforms, allowing better disease phenotyping compared with self-report.
Rohan Khera, Mitsuaki Sawano, Frederick Warner, Andreas Coppi, Aline F. Pedroso, Erica S. Spatz, Sharon Saydah, Kari A. Stephens, Kristin L. Rising, Joann G. Elmore, Mandy J. Hill, Ahamed H. Idris, Juan Carlos C. Montoy, Arjun Venkatesh, Robert A. Weinstein, Michelle Santangelo, Katherine Koo, Antonia Derden, Michael Gottlieb, Kristyn Gatling, Zohaib Ahmed, Chloe Gomez, Diego Guzman, Minna Hassaballa, Ryan Jerger, Amro Marshall Kaadan, Zhenqiu Lin, Shu-Xia Li, Imtiaz Ebna Mannan, Zimo Yang, Mengni Liu, Andrew Ulrich, Jeremiah Kinsman, Caitlin Malicki, Jocelyn Dorney, Senyte Pierce, Xavier Puente, Wafa Salah, Graham Nichol, Jill Anderson, Mary Schiffgens, Dana Morse, Karen Adams, Tracy Stober, Zenoura Maat, Kelli N. O'laughlin, Nikki Gentile, Rachel E. Geyer, Michael Willis, Gary Chang, Victoria Lyon, Robin E. Klabbers, Luis Ruiz, Kerry Malone, Jasmine Park, Kristin Rising, Efrat Kean, Anna Marie Chang, Nicole Renzi, Phillip Watts, Morgan Kelly, Kevin Schaeffer, Dylan Grau, Carly Shutty, Alex Charlton, Lindsey Shughart, Hailey Shughart, Grace Amadio, Jessica Miao, Paavali Hannikainen, Lauren E. Wisk, Michelle L'Hommedieu, Chris Chandler, Megan M. Eguchi, Kate Diaz Roldan, Raul Moreno, Robert Rodriguez, Ralph C. Wang, Juan Carlos Montoy, Robin Kemball, Virginia Chan, Cecilia Lara Chavez, Angela Wong, Mireya Arreguin, Ryan Huebinger Site, Arun Kane, Peter Nikonowicz, Sarah Sapp, Samuel McDonald, David Gallegos, Katherine Riley Martin, Ian D. Plumb, Aron J. Hall, Melissa Briggs-Hagen
J. Am. Medical Informatics Assoc.10
2024 Semantics-Aware Attention Guidance for Diagnosing Whole Slide Images
Kechun Liu, Joann G. Elmore, Linda G. Shapiro
MICCAI (5)3
2024 Machine learning classification of diagnostic accuracy in pathologists interpreting breast biopsies
abstract
OBJECTIVE: This study explores the feasibility of using machine learning to predict accurate versus inaccurate diagnoses made by pathologists based on their spatiotemporal viewing behavior when evaluating digital breast biopsy images. MATERIALS AND METHODS: The study gathered data from 140 pathologists of varying experience levels who each reviewed a set of 14 digital whole slide images of breast biopsy tissue. Pathologists' viewing behavior, including zooming and panning actions, was recorded during image evaluation. A total of 30 features were extracted from the viewing behavior data, and 4 machine learning algorithms were used to build classifiers for predicting diagnostic accuracy. RESULTS: The Random Forest classifier demonstrated the best overall performance, achieving a test accuracy of 0.81 and area under the receiver-operator characteristic curve of 0.86. Features related to attention distribution and focus on critical regions of interest were found to be important predictors of diagnostic accuracy. Further including case-level and pathologist-level information incrementally improved classifier performance. DISCUSSION: Results suggest that pathologists' viewing behavior during digital image evaluation can be leveraged to predict diagnostic accuracy, affording automated feedback and decision support systems based on viewing behavior to aid in training and, ultimately, clinical practice. They also carry implications for basic research examining the interplay between perception, thought, and action in diagnostic decision-making. CONCLUSION: The classifiers developed herein have potential applications in training and clinical settings to provide timely feedback and support to pathologists during diagnostic decision-making. Further research could explore the generalizability of these findings to other medical domains and varied levels of expertise.
Tad T. Brunyé, Kelsey Booth, Dalit D. Hendel, Kathleen F. Kerr, Hannah Shucard, Donald L. Weaver, Joann G. Elmore
J. Am. Medical Informatics Assoc.7
2023 VSGD-Net: Virtual Staining Guided Melanocyte Detection on Histopathological Images
abstract
Detection of melanocytes serves as a critical prerequisite in assessing melanocytic growth patterns when diagnosing melanoma and its precursor lesions on skin biopsy specimens. However, this detection is challenging due to the visual similarity of melanocytes to other cells in routine Hematoxylin and Eosin (H&E) stained images, leading to the failure of current nuclei detection methods. Stains such as Sox10 can mark melanocytes, but they require an additional step and expense and thus are not regularly used in clinical practice. To address these limitations, we introduce VSGD-Net, a novel detection network that learns melanocyte identification through virtual staining from H&E to Sox10. The method takes only routine H&E images during inference, resulting in a promising approach to support pathologists in the diagnosis of melanoma. To the best of our knowledge, this is the first study that investigates the detection problem using image synthesis features between two distinct pathology stainings. Extensive experimental results show that our proposed model outperforms state-of-the-art nuclei detection methods for melanocyte detection. The source code and pre-trained model are available at: https://github.com/kechunl/VSGD-Net.
Kechun Liu, Beibin Li, Caitlin J. May, Oliver Chang, Stevan Knezevich, Lisa M. Reisch, Joann G. Elmore, Linda G. Shapiro
WACV8
2022 End-to-End diagnosis of breast biopsy images with transformers
Sachin Mehta, Ximing Lu, Donald L. Weaver, Hannaneh Hajishirzi, Joann G. Elmore, Linda G. Shapiro
Medical Image Anal.6
2021 Deep Feature Representations for Variable-Sized Regions of Interest in Breast Histopathology
abstract
OBJECTIVE: Modeling variable-sized regions of interest (ROIs) in whole slide images using deep convolutional networks is a challenging task, as these networks typically require fixed-sized inputs that should contain sufficient structural and contextual information for classification. We propose a deep feature extraction framework that builds an ROI-level feature representation via weighted aggregation of the representations of variable numbers of fixed-sized patches sampled from nuclei-dense regions in breast histopathology images. METHODS: First, the initial patch-level feature representations are extracted from both fully-connected layer activations and pixel-level convolutional layer activations of a deep network, and the weights are obtained from the class predictions of the same network trained on patch samples. Then, the final patch-level feature representations are computed by concatenation of weighted instances of the extracted feature activations. Finally, the ROI-level representation is obtained by fusion of the patch-level representations by average pooling. RESULTS: Experiments using a well-characterized data set of 240 slides containing 437 ROIs marked by experienced pathologists with variable sizes and shapes result in an accuracy score of 72.65% in classifying ROIs into four diagnostic categories that cover the whole histologic spectrum. CONCLUSION: The results show that the proposed feature representations are superior to existing approaches and provide accuracies that are higher than the average accuracy of another set of pathologists. SIGNIFICANCE: The proposed generic representation that can be extracted from any type of deep convolutional architecture combines the patch appearance information captured by the network activations and the diagnostic relevance predicted by the class-specific scoring of patches for effective modeling of variable-sized ROIs.
Caner Mercan, Bulut Aygünes, Selim Aksoy, Ezgi Mercan, Linda G. Shapiro, Donald L. Weaver, Joann G. Elmore
IEEE J. Biomed. Health Informatics7
2020 Classifying Breast Histopathology Images with a Ductal Instance-Oriented Pipeline
abstract
In this study, we propose the Ductal Instance-Oriented Pipeline (DIOP) that contains a duct-level instance segmentation model, a tissue-level semantic segmentation model, and three-levels of features for diagnostic classification. Based on recent advancements in instance segmentation and the Mask RCNN model, our duct-level segmenter tries to identify each ductal individual inside a microscopic image; then, it extracts tissue-level information from the identified ductal instances. Leveraging three levels of information obtained from these ductal instances and also the histopathology image, the proposed DIOP outperforms previous approaches (both feature-based and CNN-based) in all diagnostic tasks; for the four-way classification task, the DIOP achieves comparable performance to general pathologists in this unique dataset. The proposed DIOP only takes a few seconds to run in the inference time, which could be used interactively on most modern computers. More clinical explorations are needed to study the robustness and generalizability of this system in the future.
Beibin Li, Ezgi Mercan, Sachin Mehta, Stevan Knezevich, Corey W. Arnold, Donald L. Weaver, Joann G. Elmore, Linda G. Shapiro
ICPR7
2018 Efficient and Accurate Mitosis Detection - A Lightweight RCNN Approach
Yuguang Li, Ezgi Mercan, Stevan Knezevich, Joann G. Elmore, Linda G. Shapiro
ICPRAM4
2018 Automated Diagnosis of Breast Cancer and Pre-invasive Lesions on Digital Whole Slide Images
Ezgi Mercan, Sachin Mehta, Jamen Bartlett, Donald L. Weaver, Joann G. Elmore, Linda G. Shapiro
ICPRAM5
2018 Y-Net: Joint Segmentation and Classification for Diagnosis of Breast Biopsy Images
Sachin Mehta, Ezgi Mercan, Jamen Bartlett, Donald L. Weaver, Joann G. Elmore, Linda G. Shapiro
MICCAI (2)5
2018 Learning to Segment Breast Biopsy Whole Slide Images
abstract
We trained and applied an encoder-decoder model to semantically segment breast biopsy images into biologically meaningful tissue labels. Since conventional encoderdecoder networks cannot be applied directly on large biopsy images and the different sized structures in biopsies present novel challenges, we propose four modifications: (1) an input-aware encoding block to compensate for information loss, (2) a new dense connection pattern between encoder and decoder, (3) dense and sparse decoders to combine multi-level features, (4) a multi-resolution network that fuses the results of encoder-decoders run on different resolutions. Our model outperforms a feature-based approach and conventional encoder-decoders from the literature. We use semantic segmentations produced with our model in an automated diagnosis task and obtain higher accuracies than a baseline approach that employs an SVM for featurebased segmentation, both using the same segmentationbased diagnostic features.
Sachin Mehta, Ezgi Mercan, Jamen Bartlett, Donald L. Weaver, Joann G. Elmore, Linda G. Shapiro
WACV5
2018 Detection and classification of cancer in whole slide breast histopathology images using deep convolutional networks
Baris Gecer, Selim Aksoy, Ezgi Mercan, Linda G. Shapiro, Donald L. Weaver, Joann G. Elmore
Pattern Recognit.6
2018 Multi-Instance Multi-Label Learning for Multi-Class Classification of Whole Slide Breast Histopathology Images
abstract
Digital pathology has entered a new era with the availability of whole slide scanners that create the high-resolution images of full biopsy slides. Consequently, the uncertainty regarding the correspondence between the image areas and the diagnostic labels assigned by pathologists at the slide level, and the need for identifying regions that belong to multiple classes with different clinical significances have emerged as two new challenges. However, generalizability of the state-of-the-art algorithms, whose accuracies were reported on carefully selected regions of interest (ROIs) for the binary benign versus cancer classification, to these multi-class learning and localization problems is currently unknown. This paper presents our potential solutions to these challenges by exploiting the viewing records of pathologists and their slide-level annotations in weakly supervised learning scenarios. First, we extract candidate ROIs from the logs of pathologists' image screenings based on different behaviors, such as zooming, panning, and fixation. Then, we model each slide with a bag of instances represented by the candidate ROIs and a set of class labels extracted from the pathology forms. Finally, we use four different multi-instance multi-label learning algorithms for both slide-level and ROI-level predictions of diagnostic categories in whole slide breast histopathology images. Slide-level evaluation using 5-class and 14-class settings showed average precision values up to 81% and 69%, respectively, under different weakly labeled learning scenarios. ROI-level predictions showed that the classifier could successfully perform multi-class localization and classification within whole slide images that were selected to include the full range of challenging diagnostic categories.
Caner Mercan, Selim Aksoy, Ezgi Mercan, Linda G. Shapiro, Donald L. Weaver, Joann G. Elmore
IEEE Trans. Medical Imaging6
2017 Patient portals and personal health information online: perception, access, and use by US adults
abstract
BACKGROUND: Access to online patient portals is key to improving care, but we have limited understanding of patient perceptions of online portals and the characteristics of people who use them. METHODS: Using a national survey of 3677 respondents, we describe perceptions and utilization of online personal health information (PHI) portals. RESULTS: Most respondents (92%) considered online PHI access important, yet only 34% were offered access to online PHI by a health care provider, and just 28% accessed online PHI in the past year. While there were no differences across race or ethnicity in importance of access, black and Hispanic respondents were significantly less likely to be offered access ( P = .006 and <.001, respectively) and less likely to access their online PHI ( P = .041 and <.001, respectively) compared to white and non-Hispanic respondents. CONCLUSION: Health care providers are crucial to the adoption and use of online patient portals and should be encouraged to offer consistent access regardless of patient race and ethnicity.
Sue Peacock, Ashok Reddy, Suzanne G. Leveille, Jan Walker, Thomas H. Payne, Natalia Oster, Joann G. Elmore
J. Am. Medical Informatics Assoc.7
2017 Accuracy is in the eyes of the pathologist: The visual interpretive process and diagnostic accuracy with digital whole slide images
Tad T. Brunyé, Ezgi Mercan, Donald L. Weaver, Joann G. Elmore
J. Biomed. Informatics4
2014 Localization of Diagnostically Relevant Regions of Interest in Whole Slide Images
abstract
Whole slide imaging technology enables pathologists to screen biopsy images and make a diagnosis in a digital form. This creates an opportunity to understand the screening patterns of expert pathologists and extract the patterns that lead to accurate and efficient diagnoses. For this purpose, we are taking the first step to interpret the recorded actions of world-class expert pathologists on a set of digitized breast biopsy images. We propose an algorithm to extract regions of interest from the logs of image screenings using zoom levels, time and the magnitude of panning motion. Using diagnostically relevant regions marked by experts, we use the visual bag-of-words model with texture and color features to describe these regions and train probabilistic classifiers to predict similar regions of interest in new whole slide images. The proposed algorithm gives promising results for detecting diagnostically relevant regions. We hope this attempt to predict the regions that attract pathologists' attention will provide the first step in a more comprehensive study to understand the diagnostic patterns in histopathology.
Ezgi Mercan, Selim Aksoy, Linda G. Shapiro, Donald L. Weaver, Tad T. Brunyé, Joann G. Elmore
ICPR6