Demo Data from EDBT 2026 / reviewers in the wild / expert
Ari Z. Klein
dblp:129/8217
· DBLP profile ↗
6ranked-venue papers
2as first author
2since 2021 · last 2024
0000-0002-8281-3464ORCID · reported
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 5 · 2 first-author · 2 since 2021Software engineering, systems software and programming languages · 1
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Software engineering, system software, and programming languages
1 paper |
Requirements engineering and software design · 100% |
Topics — the 1 heaviest of 1, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Requirements engineering and software design
assurance case |
0.2 | 1 | 2013 | Eliminative induction: a basis for arguing system confidence · ICSE 2013 |
Methods — techniques the papers use, named apart from their topics
eliminative induction · 0.2
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2024 | Overview of the 8th Social Media Mining for Health Applications (#SMM4H) shared tasks at the AMIA 2023 Annual SymposiumabstractOBJECTIVE: The aim of the Social Media Mining for Health Applications (#SMM4H) shared tasks is to take a community-driven approach to address the natural language processing and machine learning challenges inherent to utilizing social media data for health informatics. In this paper, we present the annotated corpora, a technical summary of participants' systems, and the performance results. METHODS: The eighth iteration of the #SMM4H shared tasks was hosted at the AMIA 2023 Annual Symposium and consisted of 5 tasks that represented various social media platforms (Twitter and Reddit), languages (English and Spanish), methods (binary classification, multi-class classification, extraction, and normalization), and topics (COVID-19, therapies, social anxiety disorder, and adverse drug events). RESULTS: In total, 29 teams registered, representing 17 countries. In general, the top-performing systems used deep neural network architectures based on pre-trained transformer models. In particular, the top-performing systems for the classification tasks were based on single models that were pre-trained on social media corpora. CONCLUSION: To facilitate future work, the datasets-a total of 61 353 posts-will remain available by request, and the CodaLab sites will remain active for a post-evaluation phase. Ari Z. Klein, Juan M. Banda, Ana Lucía Schmidt, Dongfang Xu, Ivan Flores Amaro, Raul Rodriguez-Esteban, Abeed Sarker, Graciela Gonzalez-Hernandez |
J. Am. Medical Informatics Assoc. | 1 |
| 2021 | Active neural networks to detect mentions of changes to medication treatment in social mediaabstractOBJECTIVE: We address a first step toward using social media data to supplement current efforts in monitoring population-level medication nonadherence: detecting changes to medication treatment. Medication treatment changes, like changes to dosage or to frequency of intake, that are not overseen by physicians are, by that, nonadherence to medication. Despite the consequences, including worsening health conditions or death, 50% of patients are estimated to not take medications as indicated. Current methods to identify nonadherence have major limitations. Direct observation may be intrusive or expensive, and indirect observation through patient surveys relies heavily on patients' memory and candor. Using social media data in these studies may address these limitations. METHODS: We annotated 9830 tweets mentioning medications and trained a convolutional neural network (CNN) to find mentions of medication treatment changes, regardless of whether the change was recommended by a physician. We used active and transfer learning from 12 972 reviews we annotated from WebMD to address the class imbalance of our Twitter corpus. To validate our CNN and explore future directions, we annotated 1956 positive tweets as to whether they reflect nonadherence and categorized the reasons given. RESULTS: Our CNN achieved 0.50 F1-score on this new corpus. The manual analysis of positive tweets revealed that nonadherence is evident in a subset with 9 categories of reasons for nonadherence. CONCLUSION: We showed that social media users publicly discuss medication treatment changes and may explain their reasons including when it constitutes nonadherence. This approach may be useful to supplement current efforts in adherence monitoring. Davy Weissenbacher, Suyu Ge, Ari Z. Klein, Karen O'Connor, Robert Gross, Sean Hennessy, Graciela Gonzalez-Hernandez |
J. Am. Medical Informatics Assoc. | 3 |
| 2019 | Deep neural networks ensemble for detecting medication mentions in tweetsabstractOBJECTIVE: Twitter posts are now recognized as an important source of patient-generated data, providing unique insights into population health. A fundamental step toward incorporating Twitter data in pharmacoepidemiologic research is to automatically recognize medication mentions in tweets. Given that lexical searches for medication names suffer from low recall due to misspellings or ambiguity with common words, we propose a more advanced method to recognize them. MATERIALS AND METHODS: We present Kusuri, an Ensemble Learning classifier able to identify tweets mentioning drug products and dietary supplements. Kusuri (, "medication" in Japanese) is composed of 2 modules: first, 4 different classifiers (lexicon based, spelling variant based, pattern based, and a weakly trained neural network) are applied in parallel to discover tweets potentially containing medication names; second, an ensemble of deep neural networks encoding morphological, semantic, and long-range dependencies of important words in the tweets makes the final decision. RESULTS: On a class-balanced (50-50) corpus of 15 005 tweets, Kusuri demonstrated performances close to human annotators with an F1 score of 93.7%, the best score achieved thus far on this corpus. On a corpus made of all tweets posted by 112 Twitter users (98 959 tweets, with only 0.26% mentioning medications), Kusuri obtained an F1 score of 78.8%. To the best of our knowledge, Kusuri is the first system to achieve this score on such an extremely imbalanced dataset. CONCLUSIONS: The system identifies tweets mentioning drug names with performance high enough to ensure its usefulness, and is ready to be integrated in pharmacovigilance, toxicovigilance, or more generally, public health pipelines that depend on medication name mentions. Davy Weissenbacher, Abeed Sarker, Ari Z. Klein, Karen O'Connor, Arjun Magge, Graciela Gonzalez-Hernandez |
J. Am. Medical Informatics Assoc. | 3 |
| 2019 | An interpretable natural language processing system for written medical examination assessment
Abeed Sarker, Ari Z. Klein, Janet Mee, Polina Harik, Graciela Gonzalez-Hernandez |
J. Biomed. Informatics | 2 |
| 2018 | Social media mining for birth defects research: A rule-based, bootstrapping approach to collecting data for rare health-related events on TwitterabstractBACKGROUND: Although birth defects are the leading cause of infant mortality in the United States, methods for observing human pregnancies with birth defect outcomes are limited. OBJECTIVE: The primary objectives of this study were (i) to assess whether rare health-related events-in this case, birth defects-are reported on social media, (ii) to design and deploy a natural language processing (NLP) approach for collecting such sparse data from social media, and (iii) to utilize the collected data to discover a cohort of women whose pregnancies with birth defect outcomes could be observed on social media for epidemiological analysis. METHODS: To assess whether birth defects are mentioned on social media, we mined 432 million tweets posted by 112,647 users who were automatically identified via their public announcements of pregnancy on Twitter. To retrieve tweets that mention birth defects, we developed a rule-based, bootstrapping approach, which relies on a lexicon, lexical variants generated from the lexicon entries, regular expressions, post-processing, and manual analysis guided by distributional properties. To identify users whose pregnancies with birth defect outcomes could be observed for epidemiological analysis, inclusion criteria were (i) tweets indicating that the user's child has a birth defect, and (ii) accessibility to the user's tweets during pregnancy. We conducted a semi-automatic evaluation to estimate the recall of the tweet-collection approach, and performed a preliminary assessment of the prevalence of selected birth defects among the pregnancy cohort derived from Twitter. RESULTS: We manually annotated 16,822 retrieved tweets, distinguishing tweets indicating that the user's child has a birth defect (true positives) from tweets that merely mention birth defects (false positives). Inter-annotator agreement was substantial: κ = 0.79 (Cohen's kappa). Analyzing the timelines of the 646 users whose tweets were true positives resulted in the discovery of 195 users that met the inclusion criteria. Congenital heart defects are the most common type of birth defect reported on Twitter, consistent with findings in the general population. Based on an evaluation of 4169 tweets retrieved using alternative text mining methods, the recall of the tweet-collection approach was 0.95. CONCLUSIONS: Our contributions include (i) evidence that rare health-related events are indeed reported on Twitter, (ii) a generalizable, systematic NLP approach for collecting sparse tweets, (iii) a semi-automatic method to identify undetected tweets (false negatives), and (iv) a collection of publicly available tweets by pregnant users with birth defect outcomes, which could be used for future epidemiological analysis. In future work, the annotated tweets could be used to train machine learning algorithms to automatically identify users reporting birth defect outcomes, enabling the large-scale use of social media mining as a complementary method for such epidemiological research. Ari Z. Klein, Abeed Sarker, Haitao Cai, Davy Weissenbacher, Graciela Gonzalez-Hernandez |
J. Biomed. Informatics | 1 |
| 2013 | Eliminative induction: a basis for arguing system confidenceabstractAssurance cases provide a structured method of explaining why a system has some desired property, e.g., that the system is safe. But there is no agreed approach for explaining what degree of confidence one should have in the conclusions of such a case. In this paper, we use the principle of eliminative induction to provide a justified basis for assessing how much confidence one should have in an assurance case argument. John B. Goodenough 0002, Charles B. Weinstock, Ari Z. Klein |
ICSE | 3 |