Medical systematic review query formulation is a highly complex task done by trained information specialists. Complexity comes from the reliance on lengthy Boolean queries, which express a detailed research question. To aid query formulation, information specialists use a set of exemplar documents, called 'seed studies', prior to query formulation. Seed studies help verify the effectiveness of a query prior to the full assessment of retrieved studies. Beyond this use of seeds, specific IR methods can exploit seed studies for guiding both automatic query formulation and new retrieval models. One major limitation of work to date is that these methods exploit 'pseudo seed studies' through retrospective use of included studies (i.e., relevance assessments). However, we show pseudo seed studies are not representative of real seed studies used by information specialists. Hence, we provide a test collection with real world seed studies used to assist with the formulation of queries. To support our collection, we provide an analysis, previously not possible, on how seed studies impact retrieval and perform several experiments using seed study based methods to compare the effectiveness of using seed studies versus pseudo seed studies. We make our test collection and the results of all of our experiments and analysis available at http://github.com/ielab/sysrev-seed-collection.

Formulating Boolean queries for systematic review literature search is a challenging task. Commonly, queries are formulated by information specialists using the protocol specified in the review and interactions with the research team. Information specialists have in-depth experience on how to formulate queries in this domain, but may not have in-depth knowledge about the reviews’ topics. Query formulation requires a significant amount of time and effort, and is performed interactively; specialists repeatedly formulate queries, attempt to validate their results, and reformulate specific Boolean clauses. In this paper, we investigate the possibility of automatically formulating a Boolean query from the systematic review protocol. We propose a novel five-step approach to automatic query formulation, specific to Boolean queries in this domain, which approximates the process by which information specialists formulate queries. In this process, we use syntax parsing to derive the logical structure of high-level concepts in a query, automatically extract and map concepts to entities in order to perform entity expansion, and finally apply post-processing operations (such as stemming and search filters).