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Shawn E. Yost

dblp:132/3461 · DBLP profile ↗
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1ranked-venue papers
1as first author
0since 2021 · last 2013
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › metagenomics › amplicon sequencing
amplicon sequencing analysis		 0.212013
Mutascope: sensitive detection of somatic mutations from deep amplicon sequencing · Bioinform. 2013
Bioinformatics and computational biology › sequence analysis
sequencing data analysis		 0.212013
Mutascope: sensitive detection of somatic mutations from deep amplicon sequencing · Bioinform. 2013
Bioinformatics and computational biology › cancer genomics › somatic mutation analysis
somatic mutation detection		 0.212013
Mutascope: sensitive detection of somatic mutations from deep amplicon sequencing · Bioinform. 2013

Methods — techniques the papers use, named apart from their topics

variant calling pipeline · 0.2
YearPublicationVenuePosition
2013 Mutascope: sensitive detection of somatic mutations from deep amplicon sequencing
abstract
SUMMARY: We present Mutascope, a sequencing analysis pipeline specifically developed for the identification of somatic variants present at low-allelic fraction from high-throughput sequencing of amplicons from matched tumor-normal specimen. Using datasets reproducing tumor genetic heterogeneity, we demonstrate that Mutascope has a higher sensitivity and generates fewer false-positive calls than tools designed for shotgun sequencing or diploid genomes. AVAILABILITY: Freely available on the web at http://sourceforge.net/projects/mutascope/. CONTACT: [email protected] SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Shawn E. Yost, Hakan Alakus, Hiroko Matsui, Richard B. Schwab, Kristen Jepsen, Kelly A. Frazer, Olivier Harismendy
 Bioinform.1