Demo Data from EDBT 2026 / reviewers in the wild / expert
Perikles Simon
dblp:133/1026
· DBLP profile ↗
2ranked-venue papers
1as first author
1since 2021 · last 2022
0000-0002-7996-4034ORCID · corroborated
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 2 · 1 first-author · 1 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 100% |
Topics — the 2 heaviest of 2, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology
gene expression analysis |
0.0 | 1 | 2003 | Q-Gene: Processing Quantitative Real-time RT-PCR Data · Bioinform. 2003 |
Bioinformatics and computational biology › gene expression analysis › gene expression data preprocessing
gene expression normalization |
0.0 | 1 | 2003 | Q-Gene: Processing Quantitative Real-time RT-PCR Data · Bioinform. 2003 |
Methods — techniques the papers use, named apart from their topics
normalized expressions · 0.0mean normalized expressions · 0.0
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2022 | Towards Exercise Radiomics: Deep Neural Network-Based Automatic Analysis of Thermal Images Captured During ExerciseabstractInfrared thermography is increasingly applied in sports science due to promising observations regarding changes in skin’s surface radiation temperature ($T_{sr}$) before, during, and after exercise. The common manual thermogram analysis limits an objective and reproducible measurement of$T_{sr}$. Previous analysis approaches depend on expert knowledge and have not been applied during movement. We aimed to develop a deep neural network (DNN) capable of automatically and objectively segmenting body parts, recognizing blood vessel-associated$T_{sr}$distributions, and continuously measuring$T_{sr}$during exercise. We conducted 38 cardiopulmonary exercise tests on a treadmill. We developed two DNNs: body part network and vessel network, to perform semantic segmentation of 1 107 855 thermal images. Both DNNs were trained with 263 training and 75 validation images. Additionally, we compare the results of a common manual thermogram analysis with these of the DNNs. Performance analysis identified a mean IoU of 0.8 for body part network and 0.6 for vessel network. There is a high agreement between manual and automatic analysis (r = 0.999; p$< $0.001; T-test: p = 0.116), with a mean difference of 0.01$^\circ$C (0.08). Non-parametric Bland Altman’s analysis showed that the 95% agreement ranges between - 0.086$^\circ$C and 0.228$^\circ$C. The developed DNNs enable automatic, objective, and continuous measurement of$T_{sr}$and recognition of blood vessel-associated$T_{sr}$distributions in resting and moving legs. Hence, the DNNs surpass previous algorithms by eliminating manual region of interest selection and form the currently needed foundation to extensively investigate$T_{sr}$distributions related to non-invasive diagnostics of (patho-)physiological traits in means of exercise radiomics. Barlo Hillen, Daniel Andrés López, Elmar Schömer, Markus Nägele, Perikles Simon |
IEEE J. Biomed. Health Informatics | 5 |
| 2003 | Q-Gene: Processing Quantitative Real-time RT-PCR DataabstractSUMMARY: Q-Gene is an application for the processing of quantitative real-time RT-PCR data. It offers the user the possibility to freely choose between two principally different procedures to calculate normalized gene expressions as either means of Normalized Expressions or Mean Normalized Expressions. In this contribution it will be shown that the calculation of Mean Normalized Expressions has to be used for processing simplex PCR data, while multiplex PCR data should preferably be processed by calculating Normalized Expressions. The two procedures, which are currently in widespread use and regarded as more or less equivalent alternatives, should therefore specifically be applied according to the quantification procedure used. AVAILABILITY: Web access to this program is provided at http://www.biotechniques.com/softlib/qgene.html Perikles Simon |
Bioinform. | 1 |