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Brian M. Belgodere

dblp:139/2237 · also Brian Belgodere · DBLP profile ↗
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5ranked-venue papers
1as first author
5since 2021 · last 2026
0000-0003-3294-2118ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Artificial intelligence and machine learning · 5 · 1 first-author · 5 since 2021Databases, data management, data science and information retrieval · 1 · 1 first-author · 1 since 2021Graphics, computer vision, multimedia, augmented reality and games · 1 · 1 since 2021

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Artificial intelligence
3 papers
Generative modeling · 57% Language models and text generation · 29% Trustworthy machine learning · 14%
Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%
Theoretical computer science
1 paper
Mathematical optimization · 100%

Topics — the 8 heaviest of 10, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Machine learning › Generative modeling
molecular generation
1.012026
GP-MoLFormer-Sim: Test Time Molecular Optimization Through Contextual Similarity Guidance · AAAI 2026
Machine learning › Generative modeling › molecular generation
molecular optimization
1.012026
GP-MoLFormer-Sim: Test Time Molecular Optimization Through Contextual Similarity Guidance · AAAI 2026
Natural language and speech › Language models and text generation
alignment
0.812024
Distributional Preference Alignment of LLMs via Optimal Transport · NeurIPS 2024
Natural language and speech › Language models and text generation
large language model evaluation
0.812024
Risk Aware Benchmarking of Large Language Models · ICML 2024
Bioinformatics and computational biology
drug discovery
0.312026
GP-MoLFormer-Sim: Test Time Molecular Optimization Through Contextual Similarity Guidance · AAAI 2026
Bioinformatics and computational biology › drug discovery › drug design
structure-based drug design
0.312026
GP-MoLFormer-Sim: Test Time Molecular Optimization Through Contextual Similarity Guidance · AAAI 2026
Mathematical optimization › optimal transport
entropic optimal transport
0.212024
Distributional Preference Alignment of LLMs via Optimal Transport · NeurIPS 2024
Mathematical optimization
optimal transport
0.212024
Distributional Preference Alignment of LLMs via Optimal Transport · NeurIPS 2024

Methods — techniques the papers use, named apart from their topics

genetic algorithm · 2.0contextual similarity guidance · 2.0autoregressive sampling · 2.0stochastic dominance · 1.5optimal transport · 1.5convex relaxation · 1.5portfolio optimization · 0.8central limit theorem · 0.8bootstrap variance estimation · 0.8
YearPublicationVenuePosition
2026 GP-MoLFormer-Sim: Test Time Molecular Optimization Through Contextual Similarity Guidance
abstract
The ability to design molecules while preserving similarity to a target molecule and/or property is crucial for various applications in drug discovery, chemical design, and biology. We introduce in this paper an efficient training-free method for navigating and sampling from the molecular space with a generative Chemical Language Model (CLM), while using the molecular similarity to the target as a guide. Our method leverages the contextual representations learned from the CLM itself to estimate the molecular similarity, which is then used to adjust the autoregressive sampling strategy of the CLM. At each step of the decoding process, the method tracks the distance of the current generations from the target and updates the logits to encourage the preservation of similarity in generations. We implement the method using a recently proposed ~47M parameter SMILES-based CLM, GP-MoLFormer, and therefore refer to the method as GP-MoLFormer-Sim, which enables a test-time update of the deep generative policy to reflect the contextual similarity to a set of guide molecules. The method is further integrated into a genetic algorithm (GA) and tested on a set of standard molecular optimization benchmarks involving property optimization, molecular rediscovery, and structure-based drug design. Results show that, GP-MoLFormer-Sim, combined with GA (GP-MoLFormer-Sim+GA) outperforms existing training-free baseline methods, when the oracle remains black-box. The findings in this work are a step forward in understanding and guiding the generative mechanisms of CLMs.
Jirí Navrátil 0001, Jarret Ross, Youssef Mroueh, Samuel C. Hoffman, Vijil Chenthamarakshan, Brian M. Belgodere
AAAI7
2024 Risk Aware Benchmarking of Large Language Models
abstract
We propose a distributional framework for benchmarking socio-technical risks of foundation models with quantified statistical significance. Our approach hinges on a new statistical relative testing based on first and second order stochastic dominance of real random variables. We show that the second order statistics in this test are linked to mean-risk models commonly used in econometrics and mathematical finance to balance risk and utility when choosing between alternatives. Using this framework, we formally develop a risk-aware approach for foundation model selection given guardrails quantified by specified metrics. Inspired by portfolio optimization and selection theory in mathematical finance, we define a metrics portfolio for each model as a means to aggregate a collection of metrics, and perform model selection based on the stochastic dominance of these portfolios. The statistical significance of our tests is backed theoretically by an asymptotic analysis via central limit theorems instantiated in practice via a bootstrap variance estimate. We use our framework to compare various large language models regarding risks related to drifting from instructions and outputting toxic content.
Apoorva Nitsure, Youssef Mroueh, Mattia Rigotti, Kristjan Greenewald, Brian M. Belgodere, Mikhail Yurochkin, Jirí Navrátil 0001, Igor Melnyk, Jarret Ross
ICML5
2024 Distributional Preference Alignment of LLMs via Optimal Transport
abstract
Current LLM alignment techniques use pairwise human preferences at a sample level, and as such, they do not imply an alignment on the distributional level. We propose in this paper Alignment via Optimal Transport (AOT), a novel method for distributional preference alignment of LLMs. AOT aligns LLMs on unpaired preference data by making the reward distribution of the positive samples stochastically dominant in the first order on the distribution of negative samples. We introduce a convex relaxation of this first-order stochastic dominance and cast it as an optimal transport problem with a smooth and convex cost. Thanks to the one-dimensional nature of the resulting optimal transport problem and the convexity of the cost, it has a closed-form solution via sorting on empirical measures. We fine-tune LLMs with this AOT objective, which enables alignment by penalizing the violation of the stochastic dominance of the reward distribution of the positive samples on the reward distribution of the negative samples. We analyze the sample complexity of AOT by considering the dual of the OT problem and show that it converges at the parametric rate. Empirically, we show on a diverse set of alignment datasets and LLMs that AOT leads to state-of-the-art models in the 7B family of models when evaluated with Open LLM Benchmarks and AlpacaEval. Code for $\mathsf{AOT}$ is available in the Hugging Face TRL library \url{https://ibm.biz/AOT_TRL}.
Igor Melnyk, Youssef Mroueh, Brian M. Belgodere, Mattia Rigotti, Apoorva Nitsure, Mikhail Yurochkin, Kristjan Greenewald, Jirí Navrátil 0001, Jarret Ross
NeurIPS3
2022 Cloud-Based Real-Time Molecular Screening Platform with MolFormer
Brian M. Belgodere, Vijil Chenthamarakshan, Pierre L. Dognin, Toby Kurien, Igor Melnyk, Youssef Mroueh, Inkit Padhi, Mattia Rigotti, Jarret Ross, Yair Schiff, Richard A. Young
ECML/PKDD (6)1
2022 Image Captioning as an Assistive Technology: Lessons Learned from VizWiz 2020 Challenge
abstract
Image captioning has recently demonstrated impressive progress largely owing to the introduction of neural network algorithms trained on curated dataset like MS-COCO. Often work in this field is motivated by the promise of deployment of captioning systems in practical applications. However, the scarcity of data and contexts in many competition datasets renders the utility of systems trained on these datasets limited as an assistive technology in real-world settings, such as helping visually impaired people navigate and accomplish everyday tasks. This gap motivated the introduction of the novel VizWiz dataset, which consists of images taken by the visually impaired and captions that have useful, task-oriented information. In an attempt to help the machine learning computer vision field realize its promise of producing technologies that have positive social impact, the curators of the VizWiz dataset host several competitions, including one for image captioning. This work details the theory and engineering from our winning submission to the 2020 captioning competition. Our work provides a step towards improved assistive image captioning systems. This article appears in the special track on AI & Society.
Pierre L. Dognin, Igor Melnyk, Youssef Mroueh, Inkit Padhi, Mattia Rigotti, Jarret Ross, Yair Schiff, Richard A. Young, Brian M. Belgodere
J. Artif. Intell. Res.9