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Valentina Devescovi

dblp:140/3608 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2015
—ORCID · unresolved

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 77% Computational science and engineering · 23%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
systems biology
0.212015
Mechanotransduction map: simulation model, molecular pathway, gene set · Bioinform. 2015
Computational science and engineering › numerical simulation
dynamic simulation
0.112015
Mechanotransduction map: simulation model, molecular pathway, gene set · Bioinform. 2015

Methods — techniques the papers use, named apart from their topics

signaling petri networks · 0.2celldesigner · 0.2
YearPublicationVenuePosition
2015 Mechanotransduction map: simulation model, molecular pathway, gene set
abstract
MOTIVATION: Mechanotransduction--the ability to output a biochemical signal from a mechanical input--is related to the initiation and progression of a broad spectrum of molecular events. Yet, the characterization of mechanotransduction lacks some of the most basic tools as, for instance, it can hardly be recognized by enrichment analysis tools, nor could we find any pathway representation. This greatly limits computational testing and hypothesis generation on mechanotransduction biological relevance and involvement in disease or physiological mechanisms. RESULTS: We here present a molecular map of mechanotransduction, built in CellDesigner to warrant that maximum information is embedded in a compact network format. To validate the map's necessity we tested its redundancy in comparison with existing pathways, and to estimate its sufficiency, we quantified its ability to reproduce biological events with dynamic simulations, using Signaling Petri Networks. AVAILABILITY AND IMPLEMENTATION: SMBL language map is available in the Supplementary Data: core_map.xml, basic_map.xml. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Jennifer E. Dent, Valentina Devescovi, Pietro Di Lena, Youtao Lu, Christine Nardini
Bioinform.2