Demo Data from EDBT 2026 / reviewers in the wild / expert
Ren Sun
dblp:140/5221
· DBLP profile ↗
5ranked-venue papers
1as first author
2since 2021 · last 2024
—ORCID · conflict
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 3Software engineering, systems software and programming languages · 1 · 1 since 2021Databases, data management, data science and information retrieval · 1 · 1 first-author · 1 since 2021
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
2 papers |
Bioinformatics and computational biology · 100% |
Topics — the 5 heaviest of 5, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology
genomics |
0.2 | 1 | 2016 | Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants · RECOMB 2016 |
Bioinformatics and computational biology
sequence analysis |
0.2 | 1 | 2016 | Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants · RECOMB 2016 |
Bioinformatics and computational biology › genomics
viral genomics |
0.2 | 1 | 2016 | Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants · RECOMB 2016 |
Bioinformatics and computational biology › statistical genetics › rare variant analysis
rare variant detection |
0.2 | 1 | 2014 | Accurate viral population assembly from ultra-deep sequencing data · Bioinform. 2014 |
Bioinformatics and computational biology › sequence analysis
sequencing error correction |
0.2 | 1 | 2014 | Accurate viral population assembly from ultra-deep sequencing data · Bioinform. 2014 |
Methods — techniques the papers use, named apart from their topics
expectation-maximization · 0.2
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2024 | PTSSBench: a performance evaluation platform in support of automated parameter tuning of software systems
Rong Cao, Liang Bao, Panpan Zhangsun, Chase Qishi Wu, Shouxin Wei, Ren Sun |
Autom. Softw. Eng. | 6 |
| 2024 | The Influence of the Sports Events Industry on Sichuan's Economic GrowthabstractThe sports industry occupies an important position in China's national economy, and the sports event industry is its core industry, and its role in regional economic development has received more and more attention from all parties. This paper takes Sichuan Province as an example to discuss the role of sports events in regional development. Firstly, it is a theoretical overview. This paper explores the mechanism of its economic effect from four perspectives: economic growth, industrial structure, regional agglomeration and city brand. Second is the case study. Through the grey correlation analysis of the relationship between sports and tourism industry, using the exponential smoothing method and ARMA method, and establishing a multi-indicator model, it is concluded that sports and tourism industry have the highest correlation and play a positive role in promoting regional development. Ren Sun, Yong Zhong, Annika Otto |
Int. J. Knowl. Manag. | 1 |
| 2016 | Long Single-Molecule Reads Can Resolve the Complexity of the Influenza Virus Composed of Rare, Closely Related Mutant Variants
Alexander Artyomenko, Nicholas C. Wu, Serghei Mangul, Eleazar Eskin, Ren Sun, Alex Zelikovsky |
RECOMB | 5 |
| 2015 | Rational Design and Adaptive Management of Combination Therapies for Hepatitis C Virus InfectionabstractRecent discoveries of direct acting antivirals against Hepatitis C virus (HCV) have raised hopes of effective treatment via combination therapies. Yet rapid evolution and high diversity of HCV populations, combined with the reality of suboptimal treatment adherence, make drug resistance a clinical and public health concern. We develop a general model incorporating viral dynamics and pharmacokinetics/ pharmacodynamics to assess how suboptimal adherence affects resistance development and clinical outcomes. We derive design principles and adaptive treatment strategies, identifying a high-risk period when missing doses is particularly risky for de novo resistance, and quantifying the number of additional doses needed to compensate when doses are missed. Using data from large-scale resistance assays, we demonstrate that the risk of resistance can be reduced substantially by applying these principles to a combination therapy of daclatasvir and asunaprevir. By providing a mechanistic framework to link patient characteristics to the risk of resistance, these findings show the potential of rational treatment design. Ruian Ke, Claude Loverdo, Hangfei Qi, Ren Sun, James O. Lloyd-Smith |
PLoS Comput. Biol. | 4 |
| 2014 | Accurate viral population assembly from ultra-deep sequencing dataabstractMOTIVATION: Next-generation sequencing technologies sequence viruses with ultra-deep coverage, thus promising to revolutionize our understanding of the underlying diversity of viral populations. While the sequencing coverage is high enough that even rare viral variants are sequenced, the presence of sequencing errors makes it difficult to distinguish between rare variants and sequencing errors. RESULTS: In this article, we present a method to overcome the limitations of sequencing technologies and assemble a diverse viral population that allows for the detection of previously undiscovered rare variants. The proposed method consists of a high-fidelity sequencing protocol and an accurate viral population assembly method, referred to as Viral Genome Assembler (VGA). The proposed protocol is able to eliminate sequencing errors by using individual barcodes attached to the sequencing fragments. Highly accurate data in combination with deep coverage allow VGA to assemble rare variants. VGA uses an expectation-maximization algorithm to estimate abundances of the assembled viral variants in the population. RESULTS on both synthetic and real datasets show that our method is able to accurately assemble an HIV viral population and detect rare variants previously undetectable due to sequencing errors. VGA outperforms state-of-the-art methods for genome-wide viral assembly. Furthermore, our method is the first viral assembly method that scales to millions of sequencing reads. AVAILABILITY: Our tool VGA is freely available at http://genetics.cs.ucla.edu/vga/ Serghei Mangul, Nicholas C. Wu, Nicholas Mancuso, Alex Zelikovsky, Ren Sun, Eleazar Eskin |
Bioinform. | 5 |