A growth in data volume, combined with increasing demand for real-time analysis (using the most recent data), has resulted in the emergence of database systems that concurrently support transactions and data analytics. These hybrid transactional and analytical processing (HTAP) database systems can support real-time data analysis without the high costs of synchronizing across separate single-purpose databases. Unfortunately, for many applications that perform a high rate of data updates, state-of-the-art HTAP systems incur significant losses in transactional (up to 74.6%) and/or analytical (up to 49.8%) throughput compared to performing only transactional or only analytical queries in isolation, due to (1) data movement be-tween the CPU and memory, (2) data update propagation from transactional to analytical workloads, and (3) the cost to main-tain a consistent view of data across the system. We propose Polynesia, a hardware-software co-designed system for in-memory HTAP databases that avoids the large throughput losses of traditional HTAP systems. Polynesia (1) di-vides the HTAP system into transactional and analytical pro-cessing islands, (2) implements new custom hardware that un-locks software optimizations to reduce the costs of update prop-agation and consistency, and (3) exploits processing-in-memory for the analytical islands to alleviate data movement overheads. Our evaluation shows that Polynesia outperforms three state-of-the-art HTAP systems, with average transactional/analytical throughput improvements of 1.7×/3.7×, and reduces energy consumption by 48% over the prior lowest-energy HTAP sys-tem.

Emerging edge computing platforms often contain machine learning (ML) accelerators that can accelerate inference for a wide range of neural network (NN) models. These models are designed to fit within the limited area and energy constraints of the edge computing platforms, each targeting various applications (e.g., face detection, speech recognition, translation, image captioning, video analytics). To understand how edge ML accelerators perform, we characterize the performance of a commercial Google Edge TPU, using 24 Google edge NN models (which span a wide range of NN model types) and analyzing each NN layer within each model. We find that the Edge TPU suffers from three major shortcomings: (1) it operates significantly below peak computational throughput, (2) it operates significantly below its theoretical energy efficiency, and (3) its memory system is a large energy and performance bottleneck. Our characterization reveals that the one-size-fits-all, monolithic design of the Edge TPU ignores the high degree of heterogeneity both across different NN models and across different NN layers within the same NN model, leading to the shortcomings we observe. We propose a new acceleration framework called Mensa. Mensa incorporates multiple heterogeneous edge ML accelerators (including both on-chip and near-data accelerators), each of which caters to the characteristics of a particular subset of NN models and layers. During NN inference, for each NN layer, Mensa decides which accelerator to schedule the layer on, taking into account both the optimality of each accelerator for the layer and layer-to-layer communication costs. Our comprehensive analysis of the Google edge NN models shows that all of the layers naturally group into a small number of clusters, which allows us to design an efficient implementation of Mensa for these models with only three specialized accelerators. Averaged across all 24 Google edge NN models, Mensa improves energy efficiency and throughput by 3.0x and 3.1x over the Edge TPU, and by 2.4x and 4.3x over Eyeriss v2, a state-of-the-art accelerator.

Genome sequence analysis has enabled significant advancements in medical and scientific areas such as personalized medicine, outbreak tracing, and the understanding of evolution. To perform genome sequencing, devices extract small random fragments of an organism's DNA sequence (known as reads). The first step of genome sequence analysis is a computational process known as read mapping. In read mapping, each fragment is matched to its potential location in the reference genome with the goal of identifying the original location of each read in the genome. Unfortunately, rapid genome sequencing is currently bottlenecked by the computational power and memory bandwidth limitations of existing systems, as many of the steps in genome sequence analysis must process a large amount of data. A major contributor to this bottleneck is approximate string matching (ASM), which is used at multiple points during the mapping process. ASM enables read mapping to account for sequencing errors and genetic variations in the reads. We propose GenASM, the first ASM acceleration framework for genome sequence analysis. GenASM performs bitvectorbased ASM, which can efficiently accelerate multiple steps of genome sequence analysis. We modify the underlying ASM algorithm (Bitap) to significantly increase its parallelism and reduce its memory footprint. Using this modified algorithm, we design the first hardware accelerator for Bitap. Our hardware accelerator consists of specialized systolic-array-based compute units and on-chip SRAMs that are designed to match the rate of computation with memory capacity and bandwidth, resulting in an efficient design whose performance scales linearly as we increase the number of compute units working in parallel. We demonstrate that GenASM provides significant performance and power benefits for three different use cases in genome sequence analysis. First, GenASM accelerates read alignment for both long reads and short reads. For long reads, GenASM outperforms state-of-the-art software and hardware accelerators by 116× and 3.9×, respectively, while reducing power consumption by 37× and 2.7×. For short reads, GenASM outperforms state-of-the-art software and hardware accelerators by 111× and 1.9×. Second, GenASM accelerates pre-alignment filtering for short reads, with 3.7× the performance of a state-of-the-art pre-alignment filter, while reducing power consumption by 1.7× and significantly improving the filtering accuracy. Third, GenASM accelerates edit distance calculation, with 22-12501× and 9.3-400× speedups over the state-of-the-art software library and FPGA-based accelerator, respectively, while reducing power consumption by 548-582× and 67×. We conclude that GenASM is a flexible, high-performance, and low-power framework, and we briefly discuss four other use cases that can benefit from GenASM.

Specialized on-chip accelerators are widely used to improve the energy efficiency of computing systems. Recent advances in memory technology have enabled near-data accelerators (NDAs), which reside off-chip close to main memory and can yield further benefits than on-chip accelerators. However, enforcing coherence with the rest of the system, which is already a major challenge for accelerators, becomes more difficult for NDAs. This is because (1) the cost of communication between NDAs and CPUs is high, and (2) NDA applications generate a lot of off-chip data movement. As a result, as we show in this work, existing coherence mechanisms eliminate most of the benefits of NDAs. We extensively analyze these mechanisms, and observe that (1) the majority of off-chip coherence traffic is unnecessary, and (2) much of the off-chip traffic can be eliminated if a coherence mechanism has insight into the memory accesses performed by the NDA.

We are experiencing an explosive growth in the number of consumer devices, including smartphones, tablets, web-based computers such as Chromebooks, and wearable devices. For this class of devices, energy efficiency is a first-class concern due to the limited battery capacity and thermal power budget. We find that data movement is a major contributor to the total system energy and execution time in consumer devices. The energy and performance costs of moving data between the memory system and the compute units are significantly higher than the costs of computation. As a result, addressing data movement is crucial for consumer devices. In this work, we comprehensively analyze the energy and performance impact of data movement for several widely-used Google consumer workloads: (1) the Chrome web browser; (2) TensorFlow Mobile, Google's machine learning framework; (3) video playback, and (4) video capture, both of which are used in many video services such as YouTube and Google Hangouts. We find that processing-in-memory (PIM) can significantly reduce data movement for all of these workloads, by performing part of the computation close to memory. Each workload contains simple primitives and functions that contribute to a significant amount of the overall data movement. We investigate whether these primitives and functions are feasible to implement using PIM, given the limited area and power constraints of consumer devices. Our analysis shows that offloading these primitives to PIM logic, consisting of either simple cores or specialized accelerators, eliminates a large amount of data movement, and significantly reduces total system energy (by an average of 55.4% across the workloads) and execution time (by an average of 54.2%).

Many important applications trigger bulk bitwise operations, i.e., bitwise operations on large bit vectors. In fact, recent works design techniques that exploit fast bulk bitwise operations to accelerate databases (bitmap indices, BitWeaving) and web search (BitFunnel). Unfortunately, in existing architectures, the throughput of bulk bitwise operations is limited by the memory bandwidth available to the processing unit (e.g., CPU, GPU, FPGA, processing-in-memory).

Pointer chasing is a fundamental operation, used by many important data-intensive applications (e.g., databases, key-value stores, graph processing workloads) to traverse linked data structures. This operation is both memory bound and latency sensitive, as it (1) exhibits irregular access patterns that cause frequent cache and TLB misses, and (2) requires the data from every memory access to be sent back to the CPU to determine the next pointer to access. Our goal is to accelerate pointer chasing by performing it inside main memory, thereby avoiding inefficient and high-latency data transfers between main memory and the CPU. To this end, we propose the In-Memory PoInter Chasing Accelerator (IMPICA), which leverages the logic layer within 3D-stacked memory for linked data structure traversal. This paper identifies the key design challenges of designing a pointer chasing accelerator in memory, describes new mechanisms employed within IMPICA to solve these challenges, and evaluates the performance and energy benefits of our accelerator. IMPICA addresses the key challenges of (1) how to achieve high parallelism in the presence of serial accesses in pointer chasing, and (2) how to effectively perform virtual-to-physical address translation on the memory side without requiring expensive accesses to the CPU's memory management unit. We show that the solutions to these challenges, address-access decoupling and a region-based page table, respectively, are simple and low-cost. We believe these solutions are also applicable to many other in-memory accelerators, which are likely to also face the two challenges. Our evaluations on a quad-core system show that IMPICA improves the performance of pointer chasing operations in three commonly-used linked data structures (linked lists, hash tables, and B-trees) by 92%, 29%, and 18%, respectively. This leads to a significant performance improvement in applications that utilize linked data structures - on a real database application, DBx1000, IMPICA improves transaction throughput and response time by 16% and 13%, respectively. IMPICA also significantly reduces overall system energy consumption (by 41%, 23%, and 10% for the three commonly-used data structures, and by 6% for DBx1000).

Many data structures (e.g., matrices) are typically accessed with multiple access patterns. Depending on the layout of the data structure in physical address space, some access patterns result in non-unit strides. In existing systems, which are optimized to store and access cache lines, non-unit strided accesses exhibit low spatial locality. Therefore, they incur high latency, and waste memory bandwidth and cache space.