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Shinong Zhu

dblp:144/2244 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2014
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
biological database
0.212014
tasiRNAdb: a database of ta-siRNA regulatory pathways · Bioinform. 2014
Bioinformatics and computational biology › RNA biology
non-coding RNA
0.212014
tasiRNAdb: a database of ta-siRNA regulatory pathways · Bioinform. 2014

Methods — techniques the papers use, named apart from their topics

small RNA mapping · 0.2sRNA phasing analysis · 0.2degradome analysis · 0.2
YearPublicationVenuePosition
2014 tasiRNAdb: a database of ta-siRNA regulatory pathways
abstract
SUMMARY: In plants, many trans-acting small interfering RNA (ta-siRNA) regulatory pathways have been identified as significant components of the gene networks involved in development, metabolism, responses to biotic and abiotic stresses and DNA methylation at the TAS locus. To obtain a more comprehensive understanding on the nature of ta-siRNA regulatory pathways, we developed a freely accessible resource, tasiRNAdb, to serve as a repository for the sequences of ta-siRNA regulatory pathway-related microRNAs, TASs, ta-siRNAs and ta-siRNA targets, and for the cascading relations among them. With 583 pathways from 18 species, tasiRNAdb is the largest resource for known ta-siRNA regulatory pathways currently available. tasiRNAdb also provides a tool named TasExpAnalysis that was developed to map user-submitted small RNA and degradome libraries to a stored/input TAS and to perform sRNA phasing analysis and TAS cleavage analysis. AVAILABILITY: The database of plant ta-siRNA regulatory pathways is available at http://bioinfo.jit.edu.cn/tasiRNADatabase/.
Changqing Zhang 0001, Guangping Li 0003, Shinong Zhu, Jinggui Fang
Bioinform.3