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Rebecca F. Lowdon

dblp:148/4587 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2014
0000-0003-2243-9375ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
epigenomics
0.212014
methylC Track: visual integration of single-base resolution DNA methylation data on the WashU EpiGenome Browser · Bioinform. 2014
Bioinformatics and computational biology › genome annotation
genome browser integration
0.212014
methylC Track: visual integration of single-base resolution DNA methylation data on the WashU EpiGenome Browser · Bioinform. 2014

Methods — techniques the papers use, named apart from their topics

visualization · 0.2
YearPublicationVenuePosition
2014 methylC Track: visual integration of single-base resolution DNA methylation data on the WashU EpiGenome Browser
abstract
SUMMARY: We present methylC track, an efficient mechanism for visualizing single-base resolution DNA methylation data on a genome browser. The methylC track dynamically integrates the level of methylation, the position and context of the methylated cytosine (i.e. CG, CHG and CHH), strand and confidence level (e.g. read coverage depth in the case of whole-genome bisulfite sequencing data). Investigators can access and integrate these information visually at specific locus or at the genome-wide level on the WashU EpiGenome Browser in the context of other rich epigenomic datasets. AVAILABILITY AND IMPLEMENTATION: The methylC track is part of the WashU EpiGenome Browser, which is open source and freely available at http://epigenomegateway.wustl.edu/browser/. The most up-to-date instructions and tools for preparing methylC track are available at http://epigenomegateway.wustl.edu/+/cmtk. CONTACT: [email protected] SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Daofeng Li, Rebecca F. Lowdon, Joseph F. Costello, Ting Wang 0032
Bioinform.3