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René Paradis

dblp:148/4595 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2014
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 3 heaviest of 3, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › proteomics
protein identification		 0.212014
rTANDEM, an R/Bioconductor package for MS/MS protein identification · Bioinform. 2014
Bioinformatics and computational biology
proteomics		 0.212014
rTANDEM, an R/Bioconductor package for MS/MS protein identification · Bioinform. 2014
Bioinformatics and computational biology › proteomics › mass spectrometry data analysis
tandem mass spectrometry database searching		 0.212014
rTANDEM, an R/Bioconductor package for MS/MS protein identification · Bioinform. 2014

Methods — techniques the papers use, named apart from their topics

x!tandem algorithm · 0.2r/bioconductor integration · 0.2
YearPublicationVenuePosition
2014 rTANDEM, an R/Bioconductor package for MS/MS protein identification
abstract
SUMMARY: rTANDEM is an R/Bioconductor package that interfaces the X!Tandem protein identification algorithm. The package can run the multi-threaded algorithm on proteomic data files directly from R. It also provides functions to convert search parameters and results to/from R as well as functions to manipulate parameters and automate searches. An associated R package, shinyTANDEM, provides a web-based graphical interface to visualize and interpret the results. Together, those two packages form an entry point for a general MS/MS-based proteomic pipeline in R/Bioconductor. AVAILABILITY AND IMPLEMENTATION: rTANDEM and shinyTANDEM are distributed in R/Bioconductor, http://bioconductor.org/packages/release/bioc/. The packages are under open licenses (GPL-3 and Artistice-1.0). CONTACT: [email protected] or [email protected] SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Frédéric Fournier, Charles Joly Beauparlant, René Paradis, Arnaud Droit
 Bioinform.3