EDBT 2026 Demo / reviewers in the wild / expert
Ryan Tarpine
dblp:15/8065
· DBLP profile ↗
3ranked-venue papers
1as first author
0since 2021 · last 2015
—ORCID · none
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 2 · 1 first-authorGraphics, computer vision, multimedia, augmented reality and games · 1
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
2 papers |
Bioinformatics and computational biology · 100% |
Topics — the 6 heaviest of 6, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Bioinformatics and computational biology
genomics |
0.1 | 1 | 2011 | Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection · RECOMB 2011 |
Bioinformatics and computational biology › population genetics
linkage disequilibrium |
0.1 | 1 | 2011 | Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection · RECOMB 2011 |
Bioinformatics and computational biology › genomics › genome-wide association study
tag SNP selection |
0.1 | 1 | 2011 | Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection · RECOMB 2011 |
Bioinformatics and computational biology › statistical genetics › haplotype analysis
haplotype phasing |
0.1 | 1 | 2010 | The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS · RECOMB 2010 |
Bioinformatics and computational biology › genomics
genome-wide association study |
0.0 | 1 | 2010 | The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS · RECOMB 2010 |
Bioinformatics and computational biology › cancer genomics › chromosomal aberration detection
loss of heterozygosity detection |
0.0 | 1 | 2010 | The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS · RECOMB 2010 |
Methods — techniques the papers use, named apart from their topics
combinatorial optimization · 0.1clark phase-able sample size analysis · 0.1
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2015 | Utilizing image-based features in biomedical document classificationabstractImages form a rich information source, which remains underutilized in biomedical document classification. We present here work that uses both image- and text-based features in order to identify articles of interest, in this case, pertaining to cis-regulatory modules in the context of gene-networks. Extending on our new idea, which we have recently introduced, of using OCR-based features to identify DNA contents in images, we combine image and text based classifiers to categorize documents as relevant or irrelevant to cis-regulatory modules. Using a set of hundreds of articles, marked by experts as relevant or irrelevant to cis-regulatory modules, we train/test image and text based classifiers, as well as classifiers integrating both. Our results indicate that the latter show the best performance with Recall, F-measure and Utility measures all above 0.9, demonstrating the significance of incorporating image data, and specifically OCR-based features, into the document categorization process. Moreover, the use of character distribution properties to represent images is directly relevant to other biomedical images containing text (e.g. RNA, proteins). Diagrams and other images containing text are also prevalent outside the biomedical domain, hence the work stands to be applicable and beneficial in other application areas. Kaidi Ma, Hogyeong Jeong, M. V. Rohith, Gowri Somanath, Ryan Tarpine, Kyle Schutter, Dorothea Blostein, Sorin Istrail, Chandra Kambhamettu, Hagit Shatkay |
ICIP | 5 |
| 2011 | Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection
Ryan Tarpine, Fumei Lam, Sorin Istrail |
RECOMB | 1 |
| 2010 | The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS
Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail |
RECOMB | 3 |