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Ryan Tarpine

dblp:15/8065 · DBLP profile ↗
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3ranked-venue papers
1as first author
0since 2021 · last 2015
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2 · 1 first-authorGraphics, computer vision, multimedia, augmented reality and games · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
2 papers
Bioinformatics and computational biology · 100%

Topics — the 6 heaviest of 6, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology
genomics
0.112011
Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection · RECOMB 2011
Bioinformatics and computational biology › population genetics
linkage disequilibrium
0.112011
Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection · RECOMB 2011
Bioinformatics and computational biology › genomics › genome-wide association study
tag SNP selection
0.112011
Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection · RECOMB 2011
Bioinformatics and computational biology › statistical genetics › haplotype analysis
haplotype phasing
0.112010
The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS · RECOMB 2010
Bioinformatics and computational biology › genomics
genome-wide association study
0.012010
The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS · RECOMB 2010
Bioinformatics and computational biology › cancer genomics › chromosomal aberration detection
loss of heterozygosity detection
0.012010
The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS · RECOMB 2010

Methods — techniques the papers use, named apart from their topics

combinatorial optimization · 0.1clark phase-able sample size analysis · 0.1
YearPublicationVenuePosition
2015 Utilizing image-based features in biomedical document classification
abstract
Images form a rich information source, which remains underutilized in biomedical document classification. We present here work that uses both image- and text-based features in order to identify articles of interest, in this case, pertaining to cis-regulatory modules in the context of gene-networks. Extending on our new idea, which we have recently introduced, of using OCR-based features to identify DNA contents in images, we combine image and text based classifiers to categorize documents as relevant or irrelevant to cis-regulatory modules. Using a set of hundreds of articles, marked by experts as relevant or irrelevant to cis-regulatory modules, we train/test image and text based classifiers, as well as classifiers integrating both. Our results indicate that the latter show the best performance with Recall, F-measure and Utility measures all above 0.9, demonstrating the significance of incorporating image data, and specifically OCR-based features, into the document categorization process. Moreover, the use of character distribution properties to represent images is directly relevant to other biomedical images containing text (e.g. RNA, proteins). Diagrams and other images containing text are also prevalent outside the biomedical domain, hence the work stands to be applicable and beneficial in other application areas.
Kaidi Ma, Hogyeong Jeong, M. V. Rohith, Gowri Somanath, Ryan Tarpine, Kyle Schutter, Dorothea Blostein, Sorin Istrail, Chandra Kambhamettu, Hagit Shatkay
ICIP5
2011 Conservative Extensions of Linkage Disequilibrium Measures from Pairwise to Multi-loci and Algorithms for Optimal Tagging SNP Selection
Ryan Tarpine, Fumei Lam, Sorin Istrail
RECOMB1
2010 The Clark Phase-able Sample Size Problem: Long-Range Phasing and Loss of Heterozygosity in GWAS
Bjarni V. Halldórsson, Derek Aguiar, Ryan Tarpine, Sorin Istrail
RECOMB3