MOTIVATION: Biomedical literature is one of the most relevant sources of information for knowledge mining in the field of Bioinformatics. In spite of English being the most widely addressed language in the field; in recent years, there has been a growing interest from the natural language processing community in dealing with languages other than English. However, the availability of language resources and tools for appropriate treatment of non-English texts is lacking behind. Our research is concerned with the semantic annotation of biomedical texts in the Spanish language, which can be considered an under-resourced language where biomedical text processing is concerned. RESULTS: We have carried out experiments to assess the effectiveness of several methods for the automatic annotation of biomedical texts in Spanish. One approach is based on the linguistic analysis of Spanish texts and their annotation using an information retrieval and concept disambiguation approach. A second method takes advantage of a Spanish-English machine translation process to annotate English documents and transfer annotations back to Spanish. A third method takes advantage of the combination of both procedures. Our evaluation shows that a combined system has competitive advantages over the two individual procedures. AVAILABILITY AND IMPLEMENTATION: UMLSMapper (https://snlt.vicomtech.org/umlsmapper) and the annotation transfer tool (http://scientmin.taln.upf.edu/anntransfer/) are freely available for research purposes as web services and/or demos. SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.

We describe the first experimental results in neural machine translation for Basque. As a synthetic language featuring agglutinative morphology, an extended case system, complex verbal morphology and relatively free word order, Basque presents a large number of challenging characteristics for machine translation in general, and for data-driven approaches such as attentionbased encoder-decoder models in particular. We present our results on a large range of experiments in Basque-Spanish translation, comparing several neural machine translation system variants with both rule-based and statistical machine translation systems. We demonstrate that significant gains can be obtained with a neural network approach for this challenging language pair, and describe optimal configurations in terms of word segmentation and decoding parameters, measured against test sets that feature multiple references to account for word order variability.

We describe the European Language Resources Infrastructure project, whose main aim is the provision of an infrastructure to help collect, prepare and share language resources that can in turn improve translation services in Europe.