EDBT 2026 Demo / reviewers in the wild / expert
Charlie DeZiel
dblp:151/5737
· DBLP profile ↗
1ranked-venue papers
0as first author
0since 2021 · last 2014
—ORCID · none
Domains — the database's venue-derived domains; a paper can count in several
Applied, interdisciplinary, general and emerging computing · 1
Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.
| Interdisciplinary, comprehensive, and emerging computing
1 paper |
Bioinformatics and computational biology · 77% Medical and health informatics · 23% |
Topics — the 1 heaviest of 2, each with the papers that count most for it
| Topic | Weight | Papers | Last | Evidence papers |
|---|---|---|---|---|
Medical and health informatics
genomic medicine |
0.1 | 1 | 2014 | Literome: PubMed-scale genomic knowledge base in the cloud · Bioinform. 2014 |
Methods — techniques the papers use, named apart from their topics
text mining · 0.2automatic curation · 0.2
| Year | Publication | Venue | Position |
|---|---|---|---|
| 2014 | Literome: PubMed-scale genomic knowledge base in the cloudabstractMOTIVATION: Advances in sequencing technology have led to an exponential growth of genomics data, yet it remains a formidable challenge to interpret such data for identifying disease genes and drug targets. There has been increasing interest in adopting a systems approach that incorporates prior knowledge such as gene networks and genotype-phenotype associations. The majority of such knowledge resides in text such as journal publications, which has been undergoing its own exponential growth. It has thus become a significant bottleneck to identify relevant knowledge for genomic interpretation as well as to keep up with new genomics findings. RESULTS: In the Literome project, we have developed an automatic curation system to extract genomic knowledge from PubMed articles and made this knowledge available in the cloud with a Web site to facilitate browsing, searching and reasoning. Currently, Literome focuses on two types of knowledge most pertinent to genomic medicine: directed genic interactions such as pathways and genotype-phenotype associations. Users can search for interacting genes and the nature of the interactions, as well as diseases and drugs associated with a single nucleotide polymorphism or gene. Users can also search for indirect connections between two entities, e.g. a gene and a disease might be linked because an interacting gene is associated with a related disease. AVAILABILITY AND IMPLEMENTATION: Literome is freely available at literome.azurewebsites.net. Download for non-commercial use is available via Web services. Hoifung Poon, Chris Quirk, Charlie DeZiel, David Heckerman |
Bioinform. | 3 |