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Peter J. Meikle

dblp:151/5783 · DBLP profile ↗
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2ranked-venue papers
0as first author
0since 2021 · last 2015
0000-0002-2593-4665ORCID · corroborated

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 2

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › biomarker discovery
clinical biomarker discovery
0.212014
LICRE: unsupervised feature correlation reduction for lipidomics · Bioinform. 2014
Bioinformatics and computational biology › metabolomics
lipidomics
0.212014
LICRE: unsupervised feature correlation reduction for lipidomics · Bioinform. 2014

Methods — techniques the papers use, named apart from their topics

unsupervised feature reduction · 0.2
YearPublicationVenuePosition
2015 LICRE: unsupervised feature correlation reduction for lipidomics
abstract
Bioinformatics (2014) 30(19), 2832–2833 doi: 10.1093/bioinformatics/btu381 The above article contained the following errors that have been corrected: The original URL given for the MATLAB implementation of LICRE is no longer viable and has been changed from http://ww2.cs.mu.oz.au/∼gwong/LICRE to https://sites.google.com/site/licrerepository/. The received manuscript history date for this article was incorrectly given as November 23, 2014 and has been corrected to November 23, 2013.
Gerard Wong, Jeffrey Chan, Bronwyn A. Kingwell, Christopher Leckie, Peter J. Meikle
Bioinform.5
2014 LICRE: unsupervised feature correlation reduction for lipidomics
abstract
MOTIVATION: Recent advances in high-throughput lipid profiling by liquid chromatography electrospray ionization tandem mass spectrometry (LC-ESI-MS/MS) have made it possible to quantify hundreds of individual molecular lipid species (e.g. fatty acyls, glycerolipids, glycerophospholipids, sphingolipids) in a single experimental run for hundreds of samples. This enables the lipidome of large cohorts of subjects to be profiled to identify lipid biomarkers significantly associated with disease risk, progression and treatment response. Clinically, these lipid biomarkers can be used to construct classification models for the purpose of disease screening or diagnosis. However, the inclusion of a large number of highly correlated biomarkers within a model may reduce classification performance, unnecessarily inflate associated costs of a diagnosis or a screen and reduce the feasibility of clinical translation. An unsupervised feature reduction approach can reduce feature redundancy in lipidomic biomarkers by limiting the number of highly correlated lipids while retaining informative features to achieve good classification performance for various clinical outcomes. Good predictive models based on a reduced number of biomarkers are also more cost effective and feasible from a clinical translation perspective. RESULTS: The application of LICRE to various lipidomic datasets in diabetes and cardiovascular disease demonstrated superior discrimination in terms of the area under the receiver operator characteristic curve while using fewer lipid markers when predicting various clinical outcomes. AVAILABILITY AND IMPLEMENTATION: The MATLAB implementation of LICRE is available from http://ww2.cs.mu.oz.au/∼gwong/LICRE
Gerard Wong, Jeffrey Chan, Bronwyn A. Kingwell, Christopher Leckie, Peter J. Meikle
Bioinform.5