Physical phenomena in science and engineering are frequently modeled using scalar fields. In scalar field topology, graph-based topological descriptors such as merge trees, contour trees, and Reeb graphs are commonly used to characterize topological changes in the (sub)level sets of scalar fields. One of the biggest challenges and opportunities to advance topology-based visualization is to understand and incorporate uncertainty into such topological descriptors to effectively reason about their underlying data. In this paper, we study a structural average of a set of labeled merge trees and use it to encode uncertainty in data. Specifically, we compute a 1-center tree that minimizes its maximum distance to any other tree in the set under a well-defined metric called the interleaving distance. We provide heuristic strategies that compute structural averages of merge trees whose labels do not fully agree. We further provide an interactive visualization system that resembles a numerical calculator that takes as input a set of merge trees and outputs a tree as their structural average. We also highlight structural similarities between the input and the average and incorporate uncertainty information for visual exploration. We develop a novel measure of uncertainty, referred to as consistency, via a metric-space view of the input trees. Finally, we demonstrate an application of our framework through merge trees that arise from ensembles of scalar fields. Our work is the first to employ interleaving distances and consistency to study a global, mathematically rigorous, structural average of merge trees in the context of uncertainty visualization.

We study Vietoris-Rips and Cech complexes of metric wedge sums and metric gluings. We show that the Vietoris-Rips (resp. Cech) complex of a wedge sum, equipped with a natural metric, is homotopy equivalent to the wedge sum of the Vietoris-Rips (resp. Cech) complexes. We also provide generalizations for certain metric gluings, i.e. when two metric spaces are glued together along a common isometric subset. As our main example, we deduce the homotopy type of the Vietoris-Rips complex of two metric graphs glued together along a sufficiently short path. As a result, we can describe the persistent homology, in all homological dimensions, of the Vietoris-Rips complexes of a wide class of metric graphs.

We study the geometry of sliding window embeddings of audio features that summarize perceptual information about audio, including its pitch and timbre. These embeddings can be viewed as point clouds in high dimensions, and we add structure to the point clouds using a cover tree with adaptive thresholds based on multi-scale local principal component analysis to automatically assign points to clusters. We connect neighboring clusters in a scaffolding graph, and we use knowledge of stratified space structure to refine our estimates of dimension in each cluster, demonstrating in our music applications that choruses and verses have higher dimensional structure, while transitions between them are lower dimensional. We showcase our technique with an interactive web-based application powered by Javascript and WebGL which plays music synchronized with a principal component analysis embedding of the point cloud down to 3D. We also render the clusters and the scaffolding on top of this projection to visualize the transitions between different sections of the music.

We introduce a method called multi-scale local shape analysis for extracting features that describe the local structure of points within a dataset. The method uses both geometric and topological features at multiple levels of granularity to capture diverse types of local information for subsequent machine learning algorithms operating on the dataset. Using synthetic and real dataset examples, we demonstrate significant performance improvement of classification algorithms constructed for these datasets with correspondingly augmented features.