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Gaurav Raicar

dblp:153/8317 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2018
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 4, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › protein structure analysis
intrinsically disordered protein
0.312018
OPAL: prediction of MoRF regions in intrinsically disordered protein sequences · Bioinform. 2018
Bioinformatics and computational biology › protein function prediction › functional site prediction
molecular recognition feature prediction
0.312018
OPAL: prediction of MoRF regions in intrinsically disordered protein sequences · Bioinform. 2018
Bioinformatics and computational biology
protein structure prediction
0.312018
OPAL: prediction of MoRF regions in intrinsically disordered protein sequences · Bioinform. 2018
Bioinformatics and computational biology
protein sequence analysis
0.112018
OPAL: prediction of MoRF regions in intrinsically disordered protein sequences · Bioinform. 2018

Methods — techniques the papers use, named apart from their topics

solvent accessible surface area · 0.3half-sphere exposure · 0.3backbone angle · 0.3
YearPublicationVenuePosition
2018 OPAL: prediction of MoRF regions in intrinsically disordered protein sequences
abstract
Motivation: Intrinsically disordered proteins lack stable 3-dimensional structure and play a crucial role in performing various biological functions. Key to their biological function are the molecular recognition features (MoRFs) located within long disordered regions. Computationally identifying these MoRFs from disordered protein sequences is a challenging task. In this study, we present a new MoRF predictor, OPAL, to identify MoRFs in disordered protein sequences. OPAL utilizes two independent sources of information computed using different component predictors. The scores are processed and combined using common averaging method. The first score is computed using a component MoRF predictor which utilizes composition and sequence similarity of MoRF and non-MoRF regions to detect MoRFs. The second score is calculated using half-sphere exposure (HSE), solvent accessible surface area (ASA) and backbone angle information of the disordered protein sequence, using information from the amino acid properties of flanks surrounding the MoRFs to distinguish MoRF and non-MoRF residues. Results: OPAL is evaluated using test sets that were previously used to evaluate MoRF predictors, MoRFpred, MoRFchibi and MoRFchibi-web. The results demonstrate that OPAL outperforms all the available MoRF predictors and is the most accurate predictor available for MoRF prediction. It is available at http://www.alok-ai-lab.com/tools/opal/. Contact: [email protected] or [email protected]. Supplementary information: Supplementary data are available at Bioinformatics online.
Ronesh Sharma, Gaurav Raicar, Tatsuhiko Tsunoda, Ashwini Patil, Alok Sharma
Bioinform.2