We describe a causal learning method, which employs measuring the strength of statistical dependences in terms of the Hilbert-Schmidt norm of kernel-based cross-covariance operators. Following the line of the common faithfulness assumption of constraint-based causal learning, our approach assumes that a variable Z is likely to be a common effect of X and Y, if conditioning on Z increases the dependence between X and Y. Based on this assumption, we collect "votes" for hypothetical causal directions and orient the edges by the majority principle. In most experiments with known causal structures, our method provided plausible results and outperformed the conventional constraint-based PC algorithm.

We propose a new measure of conditional dependence of random variables, based on normalized cross-covariance operators on reproducing kernel Hilbert spaces. Unlike previous kernel dependence measures, the proposed criterion does not de- pend on the choice of kernel in the limit of infinite data, for a wide class of ker- nels. At the same time, it has a straightforward empirical estimate with good convergence behaviour. We discuss the theoretical properties of the measure, and demonstrate its application in experiments.