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Jacinte Beerten

dblp:162/5852 · DBLP profile ↗
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1ranked-venue papers
1as first author
0since 2021 · last 2015
—ORCID · none

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1 · 1 first-author

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 2 heaviest of 2, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › structural biology › protein structure and function
protein aggregation
0.212015
WALTZ-DB: a benchmark database of amyloidogenic hexapeptides · Bioinform. 2015
Bioinformatics and computational biology
sequence analysis
0.112015
WALTZ-DB: a benchmark database of amyloidogenic hexapeptides · Bioinform. 2015

Methods — techniques the papers use, named apart from their topics

transmission electron microscopy · 0.2fourier transform infrared spectroscopy · 0.2dye binding · 0.2
YearPublicationVenuePosition
2015 WALTZ-DB: a benchmark database of amyloidogenic hexapeptides
abstract
Abstract Summary: Accurate prediction of amyloid-forming amino acid sequences remains an important challenge. We here present an online database that provides open access to the largest set of experimentally characterized amyloid forming hexapeptides. To this end, we expanded our previous set of 280 hexapeptides used to develop the Waltz algorithm with 89 peptides from literature review and by systematic experimental characterisation of the aggregation of 720 hexapeptides by transmission electron microscopy, dye binding and Fourier transform infrared spectroscopy. This brings the total number of experimentally characterized hexapeptides in the WALTZ-DB database to 1089, of which 244 are annotated as positive for amyloid formation. Availability and implementation: The WALTZ-DB database is freely available without any registration requirement at http://waltzdb.switchlab.org. Contact: [email protected] or [email protected]
Jacinte Beerten, Joost J. J. van Durme, Rodrigo Gallardo, Emidio Capriotti, Louise C. Serpell, Frederic Rousseau 0001, Joost Schymkowitz
Bioinform.1