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Mark B. Schultz

dblp:169/3916 · DBLP profile ↗
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1ranked-venue papers
0as first author
0since 2021 · last 2015
0000-0002-7689-6531ORCID · reported

Domains — the database's venue-derived domains; a paper can count in several

Applied, interdisciplinary, general and emerging computing · 1

Expertise — from the expertise taxonomy: the topics of the expert's papers under the CCF categories. A weight counts papers with recency: 1 for a paper about the topic, 0.3 when the topic is its context, halved every five years.

Interdisciplinary, comprehensive, and emerging computing
1 paper
Bioinformatics and computational biology · 100%

Topics — the 4 heaviest of 5, each with the papers that count most for it

TopicWeightPapersLastEvidence papers
Bioinformatics and computational biology › sequence analysis › sequence assembly › genome assembly
de novo assembly
0.212015
Bandage: interactive visualization of de novo genome assemblies · Bioinform. 2015
Bioinformatics and computational biology › sequence analysis › sequence assembly
genome assembly
0.212015
Bandage: interactive visualization of de novo genome assemblies · Bioinform. 2015
Bioinformatics and computational biology › sequence alignment › heuristic alignment
BLAST
0.112015
Bandage: interactive visualization of de novo genome assemblies · Bioinform. 2015
Bioinformatics and computational biology
sequence analysis
0.112015
Bandage: interactive visualization of de novo genome assemblies · Bioinform. 2015

Methods — techniques the papers use, named apart from their topics

interactive visualization · 0.2graph visualization · 0.2
YearPublicationVenuePosition
2015 Bandage: interactive visualization of de novo genome assemblies
abstract
UNLABELLED: Although de novo assembly graphs contain assembled contigs (nodes), the connections between those contigs (edges) are difficult for users to access. Bandage (a Bioinformatics Application for Navigating De novo Assembly Graphs Easily) is a tool for visualizing assembly graphs with connections. Users can zoom in to specific areas of the graph and interact with it by moving nodes, adding labels, changing colors and extracting sequences. BLAST searches can be performed within the Bandage graphical user interface and the hits are displayed as highlights in the graph. By displaying connections between contigs, Bandage presents new possibilities for analyzing de novo assemblies that are not possible through investigation of contigs alone. AVAILABILITY AND IMPLEMENTATION: Source code and binaries are freely available at https://github.com/rrwick/Bandage. Bandage is implemented in C++ and supported on Linux, OS X and Windows. A full feature list and screenshots are available at http://rrwick.github.io/Bandage. CONTACT: [email protected] SUPPLEMENTARY INFORMATION: Supplementary data are available at Bioinformatics online.
Ryan R. Wick, Mark B. Schultz, Justin Zobel, Kathryn E. Holt
Bioinform.2